Wall clock time and date at job start Tue Mar 31 2020 23:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39838 * 126.45586 * 2 1 4 4 C 1.35451 * 107.86269 * 180.23678 * 3 2 1 5 5 N 1.35536 * 108.87031 * 359.77737 * 4 3 2 6 6 H 0.96998 * 125.67653 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64541 * 359.97438 * 5 4 3 8 8 C 1.46686 * 126.23213 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99791 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99903 * 0.03224 * 8 7 5 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46846 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47724 * 294.99764 * 12 11 10 14 14 C 1.53009 * 109.47244 * 174.99492 * 12 11 10 15 15 N 1.46504 * 109.47073 * 55.00288 * 12 11 10 16 16 C 1.46500 * 120.00199 * 59.99575 * 15 12 11 17 17 C 1.34780 * 119.99618 * 239.99808 * 15 12 11 18 18 O 1.21278 * 120.00246 * 0.02562 * 17 15 12 19 19 C 1.50702 * 119.99709 * 179.97438 * 17 15 12 20 20 S 1.80996 * 109.46885 * 180.02562 * 19 17 15 21 21 C 1.76200 * 100.00143 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99943 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00183 * 179.97438 * 21 20 19 24 24 N 1.31632 * 119.99979 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99791 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47070 * 60.00107 * 25 23 21 27 27 H 1.48501 * 109.46852 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46983 * 300.00119 * 25 23 21 29 29 H 1.09008 * 109.46749 * 270.15019 * 1 2 3 30 30 H 1.08994 * 109.47105 * 30.15019 * 1 2 3 31 31 H 1.09001 * 109.46924 * 150.15620 * 1 2 3 32 32 H 1.07999 * 126.06742 * 0.02562 * 3 2 1 33 33 H 1.07999 * 125.56154 * 179.75652 * 4 3 2 34 34 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47226 * 299.99334 * 11 10 8 36 36 H 1.08999 * 109.47406 * 59.99933 * 11 10 8 37 37 H 1.08995 * 109.47324 * 180.02562 * 14 12 11 38 38 H 1.08996 * 109.46982 * 300.00727 * 14 12 11 39 39 H 1.08996 * 109.46376 * 60.00568 * 14 12 11 40 40 H 1.08999 * 109.47113 * 90.00695 * 16 15 12 41 41 H 1.09007 * 109.46951 * 210.00236 * 16 15 12 42 42 H 1.08999 * 109.46740 * 330.00037 * 16 15 12 43 43 H 1.09002 * 109.46978 * 300.00044 * 19 17 15 44 44 H 1.08997 * 109.47593 * 60.00346 * 19 17 15 45 45 H 0.96996 * 119.99816 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 -0.0053 5 7 3.6284 -0.6625 -0.0037 6 1 4.4190 -1.2244 -0.0063 7 6 2.3263 -1.1089 0.0034 8 6 1.8899 -2.5093 0.0068 9 8 0.7027 -2.7766 0.0126 10 7 2.8038 -3.4999 0.0035 11 6 2.3678 -4.8985 0.0063 12 6 3.5932 -5.8146 0.0010 13 1 4.1399 -5.6849 -0.9330 14 6 3.1419 -7.2709 0.1298 15 7 4.4640 -5.4719 1.1282 16 6 3.9579 -5.5656 2.4998 17 6 5.7308 -5.0703 0.9033 18 8 6.1496 -4.9921 -0.2321 19 6 6.6263 -4.7172 2.0628 20 16 8.2511 -4.2188 1.4401 21 6 9.0686 -3.8715 2.9619 22 1 8.5433 -3.9944 3.8974 23 6 10.3882 -3.4409 2.9583 24 7 11.0287 -3.2915 1.8181 25 14 11.2550 -3.0734 4.5717 26 1 11.2797 -4.2984 5.4106 27 1 12.6463 -2.6329 4.2969 28 1 10.5280 -1.9961 5.2900 29 1 -0.3633 0.0027 1.0278 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3633 -0.8914 -0.5114 32 1 2.0137 2.1549 0.0004 33 1 4.4972 1.3253 -0.0104 34 1 3.7500 -3.2868 -0.0015 35 1 1.7731 -5.0919 0.8990 36 1 1.7653 -5.0931 -0.8809 37 1 4.0149 -7.9235 0.1265 38 1 2.5952 -7.4006 1.0638 39 1 2.4941 -7.5259 -0.7089 40 1 4.1508 -6.5646 2.8908 41 1 4.4616 -4.8276 3.1242 42 1 2.8848 -5.3743 2.5049 43 1 6.1851 -3.8943 2.6252 44 1 6.7368 -5.5843 2.7139 45 1 11.9507 -2.9902 1.8156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718155868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:13 Heat of formation + Delta-G solvation = -54.064082 kcal Electronic energy + Delta-G solvation = -27223.108691 eV Core-core repulsion = 23366.607382 eV Total energy + Delta-G solvation = -3856.501309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32857 -41.23788 -40.01382 -37.73512 -35.48225 -34.59314 -33.59518 -33.08597 -30.80554 -30.19066 -28.23247 -27.88674 -27.65944 -26.89153 -23.37798 -22.79897 -21.55603 -20.74583 -20.02661 -19.63212 -19.47772 -18.36402 -17.37185 -17.06733 -16.89421 -16.85882 -16.49405 -16.33387 -15.94638 -15.14862 -14.99885 -14.65902 -14.57917 -14.52366 -14.49478 -14.05608 -13.87903 -13.74987 -13.59332 -13.49067 -13.31889 -13.20625 -13.17484 -13.07097 -12.89592 -12.82697 -12.62398 -12.55658 -12.02403 -11.73771 -11.14061 -11.11546 -10.91912 -10.29852 -10.27774 -9.79330 -9.73773 -9.14982 -8.67100 -8.35915 -6.13251 0.42266 1.23581 1.42142 1.44088 1.50266 1.53416 1.79864 1.94247 2.10825 2.21235 2.26327 2.29635 2.98580 3.23888 3.51647 3.72271 3.85530 4.02329 4.11333 4.20531 4.22512 4.23743 4.24582 4.34999 4.46136 4.53575 4.61526 4.68138 4.74129 4.86453 4.89123 4.90225 4.97443 5.00473 5.14130 5.20563 5.29455 5.40829 5.43506 5.51962 5.74381 5.97641 6.17485 6.19549 6.31332 6.48781 7.02932 7.06108 7.07354 8.72502 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010096 B = 0.003309 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.721349 B = 8460.563065 C =10486.114093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.090 4.090 3 C -0.225 4.225 4 C 0.039 3.961 5 N -0.538 5.538 6 H 0.422 0.578 7 C -0.094 4.094 8 C 0.589 3.411 9 O -0.559 6.559 10 N -0.723 5.723 11 C 0.116 3.884 12 C 0.126 3.874 13 H 0.087 0.913 14 C -0.150 4.150 15 N -0.603 5.603 16 C 0.070 3.930 17 C 0.533 3.467 18 O -0.558 6.558 19 C -0.127 4.127 20 S -0.139 6.139 21 C -0.548 4.548 22 H 0.080 0.920 23 C 0.018 3.982 24 N -0.909 5.909 25 Si 0.992 3.008 26 H -0.264 1.264 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.164 0.836 33 H 0.201 0.799 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.093 1.044 0.120 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.249 4.249 4 C -0.098 4.098 5 N -0.134 5.134 6 H 0.260 0.740 7 C -0.207 4.207 8 C 0.379 3.621 9 O -0.439 6.439 10 N -0.373 5.373 11 C -0.007 4.007 12 C 0.022 3.978 13 H 0.105 0.895 14 C -0.208 4.208 15 N -0.337 5.337 16 C -0.072 4.072 17 C 0.321 3.679 18 O -0.436 6.436 19 C -0.278 4.278 20 S 0.088 5.912 21 C -0.696 4.696 22 H 0.098 0.902 23 C -0.187 4.187 24 N -0.545 5.545 25 Si 0.814 3.186 26 H -0.189 1.189 27 H -0.205 1.205 28 H -0.187 1.187 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.218 0.782 34 H 0.231 0.769 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.084 0.808 -1.629 20.166 hybrid contribution 1.382 -0.058 1.933 2.377 sum -18.702 0.750 0.304 18.719 Atomic orbital electron populations 1.20302 0.88873 1.02763 1.02224 1.20302 0.96527 0.91383 1.01681 1.21111 0.91741 0.99396 1.12624 1.22678 1.00707 0.82731 1.03676 1.42123 1.06884 1.08082 1.56308 0.73995 1.20236 0.84806 0.93400 1.22228 1.17170 0.85477 0.83626 0.75857 1.90763 1.16824 1.83875 1.52432 1.45851 1.09448 1.06670 1.75354 1.21829 0.96220 0.78841 1.03858 1.21402 0.89885 0.96026 0.90482 0.89495 1.22005 1.02162 0.92185 1.04440 1.47913 1.10663 1.66498 1.08663 1.22030 1.01245 1.03334 0.80616 1.20112 0.82258 0.76107 0.89438 1.90700 1.74425 1.53810 1.24699 1.23402 0.98906 1.05345 1.00187 1.85486 1.05385 1.86839 1.13511 1.23159 1.00726 1.52445 0.93273 0.90166 1.26035 0.97124 0.94328 1.01249 1.70155 1.11966 1.44597 1.27822 0.85088 0.77033 0.79148 0.77289 1.18871 1.20480 1.18670 0.91418 0.90184 0.92048 0.81851 0.78200 0.76902 0.89738 0.89569 0.92493 0.90159 0.89313 0.90641 0.90751 0.89172 0.87552 0.87856 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 9.83 71.24 0.70 -1.13 16 2 C -0.09 -2.18 6.21 -19.56 -0.12 -2.30 16 3 C -0.23 -4.50 10.76 22.01 0.24 -4.27 16 4 C 0.04 0.74 11.89 83.48 0.99 1.73 16 5 N -0.54 -11.80 5.99 -183.62 -1.10 -12.90 16 6 H 0.42 8.67 8.19 -92.71 -0.76 7.91 16 7 C -0.09 -2.43 7.06 40.35 0.28 -2.14 16 8 C 0.59 15.83 7.79 86.45 0.67 16.50 16 9 O -0.56 -17.34 14.80 -4.32 -0.06 -17.40 16 10 N -0.72 -16.57 5.38 -467.09 -2.51 -19.09 16 11 C 0.12 2.19 4.92 86.38 0.42 2.62 16 12 C 0.13 2.47 2.80 44.99 0.13 2.60 16 13 H 0.09 2.17 6.90 -2.39 -0.02 2.16 16 14 C -0.15 -2.13 9.19 71.99 0.66 -1.46 16 15 N -0.60 -13.64 2.24 -822.56 -1.85 -15.49 16 16 C 0.07 1.13 9.30 127.77 1.19 2.32 16 17 C 0.53 17.52 7.40 87.66 0.65 18.17 16 18 O -0.56 -22.88 15.19 -3.02 -0.05 -22.93 16 19 C -0.13 -4.63 4.71 71.24 0.34 -4.30 16 20 S -0.14 -7.23 20.57 -56.49 -1.16 -8.39 16 21 C -0.55 -29.89 9.50 67.96 0.65 -29.25 16 22 H 0.08 4.07 7.80 -2.91 -0.02 4.05 16 23 C 0.02 0.98 5.49 84.86 0.47 1.44 16 24 N -0.91 -53.83 13.22 21.65 0.29 -53.55 16 25 Si 0.99 42.06 29.55 68.60 2.03 44.09 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.54 6.49 -2.39 -0.02 1.53 16 32 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.40 9.51 7.00 -92.71 -0.65 8.86 16 35 H 0.08 1.44 6.88 -2.39 -0.02 1.43 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.87 7.67 -2.39 -0.02 0.86 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.27 6.44 -2.38 -0.02 1.25 16 42 H 0.09 1.16 6.53 -2.39 -0.02 1.14 16 43 H 0.11 3.48 7.40 -2.39 -0.02 3.46 16 44 H 0.10 3.50 8.11 -2.40 -0.02 3.48 16 45 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -75.88 387.81 2.46 -73.42 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.38 Total: 31.69 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 7.26 Total: 0.54 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -5.17 Total: -101.02 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.11 Total: -40.33 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: -7.23 SS G_CDS: -1.16 Total: -8.39 kcal Total: -75.88 2.46 -73.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718155868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.354 kcal (2) G-P(sol) polarization free energy of solvation -75.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds