Wall clock time and date at job start Tue Mar 31 2020 23:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34483 * 125.57490 * 2 1 4 4 C 1.46687 * 106.33452 * 180.14716 * 3 2 1 5 5 C 1.47256 * 126.94355 * 179.83138 * 4 3 2 6 6 O 1.21625 * 120.00220 * 179.69333 * 5 4 3 7 7 N 1.34781 * 119.99929 * 359.68885 * 5 4 3 8 8 C 1.46500 * 119.99732 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47381 * 35.00069 * 8 7 5 10 10 C 1.53006 * 109.47249 * 274.99921 * 8 7 5 11 11 C 1.52999 * 109.46944 * 155.00564 * 8 7 5 12 12 N 1.46504 * 109.46822 * 304.99407 * 11 8 7 13 13 C 1.34773 * 119.99935 * 179.97438 * 12 11 8 14 14 O 1.21281 * 120.00498 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00130 * 179.97438 * 13 12 11 16 16 S 1.80994 * 109.47404 * 180.02562 * 15 13 12 17 17 C 1.76193 * 100.00144 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00034 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31626 * 119.99819 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47545 * 89.99806 * 21 19 17 23 23 H 1.48507 * 109.46952 * 210.00169 * 21 19 17 24 24 H 1.48496 * 109.47237 * 329.99509 * 21 19 17 25 25 C 1.36768 * 106.11359 * 359.57598 * 4 3 2 26 26 C 1.50701 * 125.80261 * 180.28027 * 25 4 3 27 27 N 1.34659 * 108.39708 * 0.25633 * 25 4 3 28 28 H 0.97009 * 124.84940 * 180.02562 * 27 25 4 29 29 H 1.09003 * 109.46647 * 270.30703 * 1 2 3 30 30 H 1.09001 * 109.47065 * 30.30507 * 1 2 3 31 31 H 1.08998 * 109.47343 * 150.31086 * 1 2 3 32 32 H 1.07999 * 126.83230 * 359.97438 * 3 2 1 33 33 H 0.96998 * 119.99903 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.47002 * 60.00085 * 10 8 7 35 35 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47050 * 300.00351 * 10 8 7 37 37 H 1.08994 * 109.47465 * 64.99757 * 11 8 7 38 38 H 1.08998 * 109.47565 * 185.00189 * 11 8 7 39 39 H 0.96995 * 120.00028 * 0.02562 * 12 11 8 40 40 H 1.08994 * 109.47356 * 300.00782 * 15 13 12 41 41 H 1.09009 * 109.46639 * 60.00595 * 15 13 12 42 42 H 0.97007 * 120.00032 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.46953 * 89.99578 * 26 25 4 44 44 H 1.08998 * 109.47263 * 210.00048 * 26 25 4 45 45 H 1.08997 * 109.47200 * 329.99971 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6744 0.6104 -0.0036 5 6 4.8978 1.4300 -0.0084 6 8 5.9893 0.8934 -0.0054 7 7 4.8081 2.7748 -0.0162 8 6 6.0252 3.5900 -0.0215 9 1 6.7953 3.0894 -0.6084 10 6 6.5197 3.7778 1.4142 11 6 5.7211 4.9565 -0.6389 12 7 5.1358 4.7719 -1.9692 13 6 4.7848 5.8447 -2.7057 14 8 4.9539 6.9628 -2.2675 15 6 4.1833 5.6549 -4.0744 16 16 3.8233 7.2713 -4.8048 17 6 3.1492 6.7648 -6.3518 18 1 3.0688 5.7139 -6.5878 19 6 2.7225 7.7164 -7.2679 20 7 2.2194 7.3379 -8.4238 21 14 2.8635 9.5340 -6.8606 22 1 4.1805 10.0435 -7.3199 23 1 1.7777 10.2804 -7.5456 24 1 2.7442 9.7230 -5.3926 25 6 3.5998 -0.7552 0.0042 26 6 4.7722 -1.7021 0.0101 27 7 2.3008 -1.1098 0.0063 28 1 1.9757 -2.0238 0.0120 29 1 -0.3633 0.0055 1.0277 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3634 -0.8927 -0.5090 32 1 1.9630 2.1233 -0.0004 33 1 3.9376 3.2027 -0.0183 34 1 6.7363 2.8043 1.8541 35 1 7.4250 4.3847 1.4102 36 1 5.7496 4.2784 2.0011 37 1 5.0170 5.4937 -0.0035 38 1 6.6439 5.5302 -0.7245 39 1 5.0003 3.8777 -2.3196 40 1 4.8879 5.1183 -4.7097 41 1 3.2607 5.0806 -3.9893 42 1 1.9215 8.0029 -9.0642 43 1 5.0545 -1.9244 1.0392 44 1 4.4958 -2.6257 -0.4985 45 1 5.6142 -1.2410 -0.5061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721916727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:26 Heat of formation + Delta-G solvation = -47.660940 kcal Electronic energy + Delta-G solvation = -26263.339412 eV Core-core repulsion = 22407.115764 eV Total energy + Delta-G solvation = -3856.223648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65384 -39.82070 -38.96251 -36.38000 -33.70050 -32.93692 -32.42977 -32.04329 -30.61170 -29.51343 -29.38403 -26.04344 -25.55126 -25.24967 -23.10590 -21.20249 -20.59136 -20.40046 -19.89927 -17.88964 -17.38927 -16.67890 -16.34103 -16.28047 -15.61275 -15.51969 -15.08719 -14.94073 -14.63817 -14.23870 -13.95460 -13.88652 -13.58614 -13.53177 -13.46550 -13.08094 -12.95384 -12.84503 -12.78699 -12.69519 -12.59599 -12.42552 -12.16241 -11.89003 -11.79308 -11.26663 -11.22489 -11.00120 -10.59242 -9.98247 -9.85183 -9.54576 -9.33864 -9.08504 -9.02282 -8.96693 -8.49044 -8.31921 -6.90690 -6.28031 -3.99571 1.49102 2.05795 2.68619 2.77576 2.97622 3.15510 3.32318 3.35121 3.39654 3.51171 3.68206 4.33965 4.40965 4.44309 4.54143 4.74840 4.77392 4.87823 4.90535 4.95299 5.05471 5.11055 5.15447 5.23847 5.29115 5.31650 5.37394 5.47641 5.48597 5.52266 5.64120 5.67726 5.76782 5.79760 5.94147 5.98601 6.03864 6.32179 6.47707 6.51565 6.63846 7.09707 7.42257 7.60436 7.95112 8.18015 8.42914 8.48913 9.18172 10.81265 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.002479 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.845482 B =11292.350067 C =12831.016326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.013 3.987 3 C -0.164 4.164 4 C -0.236 4.236 5 C 0.595 3.405 6 O -0.551 6.551 7 N -0.724 5.724 8 C 0.133 3.867 9 H 0.096 0.904 10 C -0.160 4.160 11 C 0.113 3.887 12 N -0.736 5.736 13 C 0.531 3.469 14 O -0.520 6.520 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C 0.108 3.892 26 C -0.095 4.095 27 N -0.550 5.550 28 H 0.414 0.586 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.401 0.599 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 -19.248 21.918 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.188 4.188 4 C -0.246 4.246 5 C 0.385 3.615 6 O -0.430 6.430 7 N -0.376 5.376 8 C 0.028 3.972 9 H 0.114 0.886 10 C -0.219 4.219 11 C -0.011 4.011 12 N -0.391 5.391 13 C 0.317 3.683 14 O -0.394 6.394 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.010 4.010 26 C -0.152 4.152 27 N -0.146 5.146 28 H 0.251 0.749 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.237 0.763 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.236 0.764 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.627 -17.788 22.475 28.708 hybrid contribution -1.004 -1.157 -0.821 1.738 sum 0.623 -18.945 21.654 28.778 Atomic orbital electron populations 1.20359 0.87612 1.03663 1.02768 1.20244 0.93578 0.85916 1.09857 1.21814 0.90791 0.97867 1.08320 1.20050 0.92868 0.92217 1.19490 1.17329 0.87760 0.81486 0.74933 1.90732 1.28651 1.72388 1.51271 1.45882 1.09593 1.05912 1.76184 1.21201 0.87967 0.90403 0.97583 0.88620 1.22102 1.01612 1.02774 0.95368 1.21629 0.99894 0.95706 0.83899 1.45955 1.65854 1.09568 1.17759 1.20276 0.77342 0.84306 0.86376 1.90702 1.52970 1.23833 1.71904 1.23279 1.03770 1.05155 0.95280 1.84765 1.81757 1.05426 1.19555 1.22323 1.47240 0.97413 0.99861 0.89406 1.24718 0.93347 0.99384 0.93897 1.69942 1.40009 1.34853 1.06957 0.86729 0.78826 0.84636 0.81614 1.19218 1.19976 1.15905 1.20308 0.84865 0.94263 1.01539 1.20583 0.94729 0.96512 1.03417 1.41559 1.05354 1.08857 1.58853 0.74942 0.90971 0.89685 0.91700 0.83716 0.76281 0.91545 0.91222 0.92121 0.90937 0.89986 0.76448 0.88522 0.88476 0.91957 0.90502 0.91862 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.41 36.01 0.37 -0.05 16 2 C 0.01 0.10 7.13 -81.86 -0.58 -0.49 16 3 C -0.16 -1.47 10.45 -37.50 -0.39 -1.86 16 4 C -0.24 -2.46 6.29 -103.35 -0.65 -3.11 16 5 C 0.60 6.76 7.77 -12.59 -0.10 6.66 16 6 O -0.55 -7.58 14.47 5.26 0.08 -7.51 16 7 N -0.72 -6.73 4.51 -54.93 -0.25 -6.98 16 8 C 0.13 1.23 2.73 -67.93 -0.19 1.04 16 9 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 10 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 11 C 0.11 1.20 5.23 -4.04 -0.02 1.18 16 12 N -0.74 -9.26 5.39 -60.29 -0.32 -9.59 16 13 C 0.53 9.29 7.85 -10.98 -0.09 9.20 16 14 O -0.52 -11.00 15.86 5.56 0.09 -10.91 16 15 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 16 S -0.14 -3.58 18.54 -107.50 -1.99 -5.57 16 17 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 18 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 21 Si 0.86 21.81 27.74 -169.99 -4.72 17.09 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 25 C 0.11 0.97 7.17 -81.88 -0.59 0.38 16 26 C -0.10 -0.71 9.88 36.01 0.36 -0.36 16 27 N -0.55 -3.76 5.90 -5.42 -0.03 -3.79 16 28 H 0.41 1.57 8.96 -40.82 -0.37 1.20 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.15 1.09 7.70 -52.49 -0.40 0.68 16 33 H 0.40 3.30 7.73 -40.82 -0.32 2.99 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.40 4.41 8.14 -40.82 -0.33 4.08 16 40 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 41 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.10 0.98 6.46 -51.93 -0.34 0.65 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -36.45 394.05 -8.32 -44.76 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.80 Total: 4.98 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.08 Total: -2.54 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.17 Total: -46.24 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.16 Total: -18.42 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.45 -8.32 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721916727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.897 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds