Wall clock time and date at job start Tue Mar 31 2020 23:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34483 * 125.57490 * 2 1 4 4 C 1.46687 * 106.33452 * 180.14716 * 3 2 1 5 5 C 1.47256 * 126.94355 * 179.83138 * 4 3 2 6 6 O 1.21625 * 120.00220 * 179.69333 * 5 4 3 7 7 N 1.34781 * 119.99929 * 359.68885 * 5 4 3 8 8 C 1.46500 * 119.99732 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47381 * 35.00069 * 8 7 5 10 10 C 1.53006 * 109.47249 * 274.99921 * 8 7 5 11 11 C 1.52999 * 109.46944 * 155.00564 * 8 7 5 12 12 N 1.46504 * 109.46822 * 304.99407 * 11 8 7 13 13 C 1.34773 * 119.99935 * 179.97438 * 12 11 8 14 14 O 1.21281 * 120.00498 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00130 * 179.97438 * 13 12 11 16 16 S 1.80994 * 109.47404 * 180.02562 * 15 13 12 17 17 C 1.76193 * 100.00144 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00034 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00128 * 180.02562 * 17 16 15 20 20 N 1.31626 * 119.99819 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47545 * 89.99806 * 21 19 17 23 23 H 1.48507 * 109.46952 * 210.00169 * 21 19 17 24 24 H 1.48496 * 109.47237 * 329.99509 * 21 19 17 25 25 C 1.36768 * 106.11359 * 359.57598 * 4 3 2 26 26 C 1.50701 * 125.80261 * 180.28027 * 25 4 3 27 27 N 1.34659 * 108.39708 * 0.25633 * 25 4 3 28 28 H 0.97009 * 124.84940 * 180.02562 * 27 25 4 29 29 H 1.09003 * 109.46647 * 270.30703 * 1 2 3 30 30 H 1.09001 * 109.47065 * 30.30507 * 1 2 3 31 31 H 1.08998 * 109.47343 * 150.31086 * 1 2 3 32 32 H 1.07999 * 126.83230 * 359.97438 * 3 2 1 33 33 H 0.96998 * 119.99903 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.47002 * 60.00085 * 10 8 7 35 35 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47050 * 300.00351 * 10 8 7 37 37 H 1.08994 * 109.47465 * 64.99757 * 11 8 7 38 38 H 1.08998 * 109.47565 * 185.00189 * 11 8 7 39 39 H 0.96995 * 120.00028 * 0.02562 * 12 11 8 40 40 H 1.08994 * 109.47356 * 300.00782 * 15 13 12 41 41 H 1.09009 * 109.46639 * 60.00595 * 15 13 12 42 42 H 0.97007 * 120.00032 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.46953 * 89.99578 * 26 25 4 44 44 H 1.08998 * 109.47263 * 210.00048 * 26 25 4 45 45 H 1.08997 * 109.47200 * 329.99971 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6744 0.6104 -0.0036 5 6 4.8978 1.4300 -0.0084 6 8 5.9893 0.8934 -0.0054 7 7 4.8081 2.7748 -0.0162 8 6 6.0252 3.5900 -0.0215 9 1 6.7953 3.0894 -0.6084 10 6 6.5197 3.7778 1.4142 11 6 5.7211 4.9565 -0.6389 12 7 5.1358 4.7719 -1.9692 13 6 4.7848 5.8447 -2.7057 14 8 4.9539 6.9628 -2.2675 15 6 4.1833 5.6549 -4.0744 16 16 3.8233 7.2713 -4.8048 17 6 3.1492 6.7648 -6.3518 18 1 3.0688 5.7139 -6.5878 19 6 2.7225 7.7164 -7.2679 20 7 2.2194 7.3379 -8.4238 21 14 2.8635 9.5340 -6.8606 22 1 4.1805 10.0435 -7.3199 23 1 1.7777 10.2804 -7.5456 24 1 2.7442 9.7230 -5.3926 25 6 3.5998 -0.7552 0.0042 26 6 4.7722 -1.7021 0.0101 27 7 2.3008 -1.1098 0.0063 28 1 1.9757 -2.0238 0.0120 29 1 -0.3633 0.0055 1.0277 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3634 -0.8927 -0.5090 32 1 1.9630 2.1233 -0.0004 33 1 3.9376 3.2027 -0.0183 34 1 6.7363 2.8043 1.8541 35 1 7.4250 4.3847 1.4102 36 1 5.7496 4.2784 2.0011 37 1 5.0170 5.4937 -0.0035 38 1 6.6439 5.5302 -0.7245 39 1 5.0003 3.8777 -2.3196 40 1 4.8879 5.1183 -4.7097 41 1 3.2607 5.0806 -3.9893 42 1 1.9215 8.0029 -9.0642 43 1 5.0545 -1.9244 1.0392 44 1 4.4958 -2.6257 -0.4985 45 1 5.6142 -1.2410 -0.5061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721916727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:26 Heat of formation + Delta-G solvation = -74.232467 kcal Electronic energy + Delta-G solvation = -26264.491640 eV Core-core repulsion = 22407.115764 eV Total energy + Delta-G solvation = -3857.375876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.28170 -40.89787 -40.08620 -37.37091 -34.82710 -34.65778 -33.50450 -32.86265 -31.46619 -30.73032 -29.95066 -27.88952 -26.89342 -25.92444 -23.83051 -21.98208 -21.75907 -21.20702 -20.70059 -19.85395 -18.09048 -17.90778 -17.61697 -17.11832 -17.05808 -16.58259 -16.40022 -16.19992 -15.73446 -15.33960 -14.99348 -14.96783 -14.77040 -14.59739 -14.19711 -14.09061 -14.02579 -13.83734 -13.57195 -13.45309 -13.34467 -13.27174 -13.06826 -12.99508 -12.91765 -12.89012 -12.61503 -12.38979 -12.02804 -11.84913 -11.16426 -11.03356 -10.85998 -10.53274 -10.19445 -10.14801 -9.74236 -8.98501 -8.94445 -8.50864 -6.21516 0.75803 0.99398 1.32778 1.44535 1.47651 1.55995 1.56629 2.05652 2.22266 2.26839 2.49335 2.58350 2.72644 2.87462 3.58532 3.85088 3.86599 3.98549 4.08513 4.20700 4.22826 4.25814 4.31138 4.47682 4.51154 4.59549 4.66514 4.72711 4.73879 4.79392 4.81684 4.88175 5.01076 5.10082 5.15900 5.24106 5.34237 5.38624 5.55971 5.71351 5.83671 6.01022 6.12165 6.39907 6.58071 6.68094 6.94208 7.15477 7.35961 8.61711 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.002479 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.845482 B =11292.350067 C =12831.016326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.015 3.985 3 C -0.183 4.183 4 C -0.266 4.266 5 C 0.592 3.408 6 O -0.582 6.582 7 N -0.716 5.716 8 C 0.142 3.858 9 H 0.085 0.915 10 C -0.154 4.154 11 C 0.117 3.883 12 N -0.713 5.713 13 C 0.538 3.462 14 O -0.558 6.558 15 C -0.114 4.114 16 S -0.170 6.170 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.045 3.955 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.234 1.234 25 C 0.101 3.899 26 C -0.091 4.091 27 N -0.538 5.538 28 H 0.429 0.571 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.409 0.591 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.411 0.589 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.277 0.723 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -19.745 23.429 30.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.207 4.207 4 C -0.276 4.276 5 C 0.382 3.618 6 O -0.464 6.464 7 N -0.368 5.368 8 C 0.037 3.963 9 H 0.103 0.897 10 C -0.213 4.213 11 C -0.007 4.007 12 N -0.367 5.367 13 C 0.324 3.676 14 O -0.436 6.436 15 C -0.264 4.264 16 S 0.057 5.943 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.161 4.161 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.158 1.158 25 C -0.019 4.019 26 C -0.148 4.148 27 N -0.136 5.136 28 H 0.268 0.732 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.171 0.829 33 H 0.245 0.755 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.248 0.752 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.074 -18.335 24.001 30.222 hybrid contribution -0.830 -1.192 -1.226 1.901 sum 0.244 -19.527 22.775 30.001 Atomic orbital electron populations 1.20434 0.85629 1.04406 1.03726 1.20676 0.94795 0.85688 1.08328 1.22013 0.90384 0.98886 1.09406 1.20187 0.93099 0.93020 1.21271 1.17560 0.87763 0.81964 0.74464 1.90712 1.29768 1.72989 1.52923 1.45815 1.09936 1.05444 1.75556 1.21105 0.87667 0.89353 0.98131 0.89665 1.22050 1.02491 1.02429 0.94306 1.21752 0.99956 0.96499 0.82494 1.45737 1.64082 1.08846 1.17990 1.19862 0.77303 0.84643 0.85802 1.90696 1.54981 1.25381 1.72522 1.23277 1.05170 1.01569 0.96427 1.84646 1.81622 1.10136 1.17911 1.22470 1.47202 0.96295 1.01740 0.92148 1.25588 0.93050 1.03649 0.93790 1.70021 1.41054 1.36556 1.08005 0.85851 0.79337 0.79614 0.81473 1.18771 1.18346 1.15823 1.20535 0.85970 0.94228 1.01123 1.20540 0.93525 0.97011 1.03752 1.41563 1.04579 1.09682 1.57764 0.73152 0.89825 0.89610 0.90308 0.82908 0.75505 0.92752 0.89928 0.91185 0.90284 0.89767 0.75223 0.87330 0.86851 0.91367 0.89958 0.89466 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.41 71.24 0.74 0.10 16 2 C 0.01 0.20 7.13 40.98 0.29 0.49 16 3 C -0.18 -3.08 10.45 23.62 0.25 -2.83 16 4 C -0.27 -5.39 6.29 -19.04 -0.12 -5.51 16 5 C 0.59 13.33 7.77 86.61 0.67 14.00 16 6 O -0.58 -16.23 14.47 -4.11 -0.06 -16.29 16 7 N -0.72 -12.64 4.51 -445.95 -2.01 -14.66 16 8 C 0.14 2.45 2.73 44.99 0.12 2.57 16 9 H 0.09 1.71 7.58 -2.39 -0.02 1.69 16 10 C -0.15 -2.29 9.48 71.98 0.68 -1.61 16 11 C 0.12 2.25 5.23 86.38 0.45 2.70 16 12 N -0.71 -16.64 5.39 -463.06 -2.49 -19.13 16 13 C 0.54 18.02 7.85 87.66 0.69 18.71 16 14 O -0.56 -22.94 15.86 -3.03 -0.05 -22.99 16 15 C -0.11 -4.26 6.16 71.24 0.44 -3.82 16 16 S -0.17 -8.51 18.54 -56.49 -1.05 -9.56 16 17 C -0.53 -30.85 10.04 67.96 0.68 -30.17 16 18 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 19 C 0.04 2.61 5.50 84.86 0.47 3.08 16 20 N -0.92 -56.06 13.97 21.65 0.30 -55.76 16 21 Si 0.92 44.87 27.74 68.60 1.90 46.77 16 22 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.23 -11.39 6.74 99.48 0.67 -10.72 16 25 C 0.10 1.72 7.17 41.78 0.30 2.02 16 26 C -0.09 -1.30 9.88 71.24 0.70 -0.60 16 27 N -0.54 -6.43 5.90 -171.07 -1.01 -7.44 16 28 H 0.43 2.28 8.96 -92.70 -0.83 1.45 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.15 2.13 7.70 -2.91 -0.02 2.11 16 33 H 0.41 6.17 7.73 -92.71 -0.72 5.46 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.41 8.26 8.14 -92.71 -0.75 7.51 16 40 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 41 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 42 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 1.56 6.46 -2.39 -0.02 1.54 16 Total: -1.00 -79.06 394.05 0.60 -78.46 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -1.30 Total: 21.48 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 6.37 Total: -0.87 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -5.21 Total: -96.98 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.11 Total: -39.28 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.56 kcal Total: -79.06 0.60 -78.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721916727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.224 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds