Wall clock time and date at job start Tue Mar 31 2020 23:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36770 * 125.79901 * 2 1 4 4 C 1.47266 * 126.94341 * 359.97438 * 3 2 1 5 5 O 1.21623 * 119.99868 * 359.70865 * 4 3 2 6 6 N 1.34775 * 119.99637 * 179.70782 * 4 3 2 7 7 C 1.46506 * 119.99693 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.46660 * 35.00912 * 7 6 4 9 9 C 1.52997 * 109.47289 * 275.00198 * 7 6 4 10 10 C 1.52999 * 109.46684 * 155.00124 * 7 6 4 11 11 N 1.46496 * 109.47535 * 305.00097 * 10 7 6 12 12 C 1.34777 * 120.00105 * 180.02562 * 11 10 7 13 13 O 1.21282 * 119.99953 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00049 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.47074 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99858 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00045 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00246 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47154 * 89.99984 * 20 18 16 22 22 H 1.48498 * 109.46874 * 209.99668 * 20 18 16 23 23 H 1.48499 * 109.47057 * 330.00024 * 20 18 16 24 24 C 1.46689 * 106.11332 * 179.71815 * 3 2 1 25 25 C 1.34484 * 106.33216 * 0.26219 * 24 3 2 26 26 N 1.34652 * 125.80251 * 180.16823 * 2 1 3 27 27 C 1.46503 * 124.85317 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.46917 * 89.99566 * 1 2 3 29 29 H 1.08994 * 109.47310 * 209.99785 * 1 2 3 30 30 H 1.08998 * 109.47321 * 330.00153 * 1 2 3 31 31 H 0.97000 * 120.00190 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 33 33 H 1.09001 * 109.46832 * 60.00146 * 9 7 6 34 34 H 1.09004 * 109.47261 * 300.00128 * 9 7 6 35 35 H 1.08998 * 109.47565 * 65.00686 * 10 7 6 36 36 H 1.09000 * 109.46738 * 185.00167 * 10 7 6 37 37 H 0.97001 * 120.00379 * 0.02562 * 11 10 7 38 38 H 1.09000 * 109.47033 * 300.00347 * 14 12 11 39 39 H 1.09000 * 109.46983 * 60.00273 * 14 12 11 40 40 H 0.97001 * 120.00582 * 179.97438 * 19 18 16 41 41 H 1.07997 * 126.83189 * 180.30301 * 24 3 2 42 42 H 1.08007 * 125.57431 * 179.97438 * 25 24 3 43 43 H 1.09001 * 109.47422 * 270.31621 * 27 26 2 44 44 H 1.09007 * 109.46781 * 30.31519 * 27 26 2 45 45 H 1.08994 * 109.47308 * 150.30761 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 -0.0005 5 8 0.6839 2.7839 -0.0064 6 7 2.7849 3.5054 0.0055 7 6 2.3503 4.9045 0.0044 8 1 1.4354 5.0011 0.5890 9 6 2.0869 5.3556 -1.4336 10 6 3.4442 5.7787 0.6209 11 7 3.7805 5.2726 1.9539 12 6 4.7252 5.8900 2.6906 13 8 5.2966 6.8650 2.2502 14 6 5.0709 5.3697 4.0621 15 16 6.3650 6.4039 4.7913 16 6 6.5678 5.5922 6.3420 17 1 5.9701 4.7245 6.5796 18 6 7.4956 6.0678 7.2582 19 7 8.2244 7.1249 6.9685 20 14 7.7110 5.2068 8.9019 21 1 8.7474 4.1508 8.7756 22 1 8.1336 6.1950 9.9266 23 1 6.4233 4.5902 9.3103 24 6 3.6882 0.6152 0.0069 25 6 3.6095 -0.7274 0.0046 26 7 2.2947 -1.0921 -0.0032 27 6 1.8094 -2.4744 -0.0078 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.7310 3.2914 0.0098 32 1 1.7631 6.3965 -1.4344 33 1 1.3076 4.7328 -1.8728 34 1 3.0018 5.2589 -2.0182 35 1 4.3309 5.7518 -0.0124 36 1 3.0864 6.8052 0.7017 37 1 3.3234 4.4930 2.3063 38 1 4.1839 5.3966 4.6950 39 1 5.4288 4.3432 3.9816 40 1 8.8725 7.4576 7.6089 41 1 4.5889 1.2110 0.0134 42 1 4.4498 -1.4060 0.0079 43 1 1.6833 -2.8187 1.0187 44 1 0.8521 -2.5216 -0.5271 45 1 2.5315 -3.1113 -0.5186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721929185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:07 Heat of formation + Delta-G solvation = -34.071155 kcal Electronic energy + Delta-G solvation = -26227.700598 eV Core-core repulsion = 22372.066248 eV Total energy + Delta-G solvation = -3855.634351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66269 -39.76505 -38.86879 -36.30903 -33.65783 -33.16524 -32.41278 -31.88440 -31.18844 -29.33137 -27.05289 -26.61323 -25.91676 -25.33908 -22.99129 -21.38127 -20.31434 -20.28262 -19.36479 -17.92141 -17.65347 -16.55025 -16.26978 -16.19833 -16.00066 -15.47495 -15.00692 -14.81025 -14.78774 -14.46726 -13.99652 -13.78025 -13.46205 -13.36829 -13.35540 -13.02576 -12.95553 -12.86811 -12.78936 -12.74438 -12.50365 -12.33592 -12.08515 -11.84062 -11.73978 -11.17219 -11.04956 -11.00800 -10.74567 -9.94702 -9.80106 -9.41872 -9.25653 -9.05629 -8.89947 -8.88239 -8.43851 -8.21708 -6.48036 -6.20107 -3.90370 1.50887 2.14025 2.42345 3.02213 3.10719 3.20719 3.23394 3.29494 3.34475 3.42243 3.75951 4.22027 4.27665 4.42216 4.49146 4.60528 4.64020 4.86162 4.91247 4.95415 4.99315 5.10724 5.15044 5.19436 5.25584 5.34121 5.43498 5.52153 5.58128 5.59356 5.67681 5.75725 5.83600 5.91865 5.94684 6.02446 6.17395 6.36989 6.48584 6.61965 6.73846 6.89755 7.46604 7.61315 7.72047 8.22075 8.36981 8.62813 9.25281 10.87313 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011046 B = 0.002430 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.343531 B =11520.748001 C =13430.819121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.106 3.894 3 C -0.240 4.240 4 C 0.596 3.404 5 O -0.552 6.552 6 N -0.723 5.723 7 C 0.134 3.866 8 H 0.095 0.905 9 C -0.160 4.160 10 C 0.113 3.887 11 N -0.738 5.738 12 C 0.532 3.468 13 O -0.518 6.518 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.165 4.165 25 C -0.018 4.018 26 N -0.446 5.446 27 C 0.067 3.933 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.402 0.598 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.146 0.854 42 H 0.167 0.833 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.843 -18.855 -18.259 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.250 4.250 4 C 0.385 3.615 5 O -0.432 6.432 6 N -0.375 5.375 7 C 0.029 3.971 8 H 0.113 0.887 9 C -0.218 4.218 10 C -0.011 4.011 11 N -0.394 5.394 12 C 0.318 3.682 13 O -0.392 6.392 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.189 4.189 25 C -0.143 4.143 26 N -0.123 5.123 27 C -0.075 4.075 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.237 0.763 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.164 0.836 42 H 0.185 0.815 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.673 -17.228 -18.946 29.514 hybrid contribution -0.037 -2.300 1.734 2.881 sum -14.709 -19.528 -17.213 29.899 Atomic orbital electron populations 1.20563 0.87122 1.04181 1.03260 1.20324 0.93736 0.85197 1.01853 1.20075 0.93263 0.91861 1.19776 1.17320 0.85186 0.84031 0.74933 1.90727 1.16631 1.84445 1.51368 1.45881 1.10075 1.05438 1.76127 1.21200 0.98211 0.80181 0.97536 0.88684 1.22101 1.02440 1.01928 0.95377 1.21613 0.97597 0.97948 0.83991 1.45995 1.41936 1.33935 1.17498 1.20305 0.78378 0.83047 0.86440 1.90705 1.50904 1.25689 1.71900 1.23530 1.05968 1.05359 0.95536 1.85377 1.42890 1.38244 1.16824 1.22869 1.26245 1.17093 1.02089 0.90951 1.24989 0.94814 0.95051 0.98742 1.70015 1.22333 1.22127 1.35843 0.86172 0.78569 0.79048 0.81737 1.20292 1.20763 1.19698 1.22044 0.95778 0.93642 1.07407 1.21722 0.85349 0.96356 1.10905 1.43572 1.06093 1.06143 1.56469 1.22104 1.01690 0.80043 1.03632 0.90602 0.91979 0.87970 0.76274 0.91223 0.91607 0.92110 0.90990 0.90044 0.76619 0.89253 0.89249 0.92202 0.83588 0.81528 0.90583 0.89662 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.26 36.01 0.33 -0.41 16 2 C 0.11 1.01 6.89 -81.89 -0.56 0.45 16 3 C -0.24 -2.59 6.29 -103.35 -0.65 -3.24 16 4 C 0.60 7.01 7.77 -12.59 -0.10 6.91 16 5 O -0.55 -7.82 14.48 5.26 0.08 -7.74 16 6 N -0.72 -7.07 4.51 -54.93 -0.25 -7.32 16 7 C 0.13 1.31 2.73 -67.93 -0.19 1.12 16 8 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 9 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 10 C 0.11 1.28 5.23 -4.04 -0.02 1.26 16 11 N -0.74 -9.92 5.39 -60.30 -0.32 -10.24 16 12 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 13 O -0.52 -11.67 15.86 5.56 0.09 -11.58 16 14 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 16 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 20 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.16 -1.49 10.56 -37.50 -0.40 -1.89 16 25 C -0.02 -0.14 11.34 -16.82 -0.19 -0.33 16 26 N -0.45 -3.36 3.09 -119.88 -0.37 -3.73 16 27 C 0.07 0.24 10.60 59.85 0.63 0.87 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.35 7.59 -51.93 -0.39 -0.04 16 30 H 0.10 1.02 6.47 -51.93 -0.34 0.68 16 31 H 0.40 3.50 7.73 -40.82 -0.32 3.18 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 4.69 8.14 -40.82 -0.33 4.36 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.15 1.10 7.69 -52.49 -0.40 0.70 16 42 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.08 0.21 7.51 -51.92 -0.39 -0.18 16 45 H 0.09 0.17 8.13 -51.93 -0.42 -0.26 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -37.19 395.44 -8.53 -45.72 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.76 Total: 4.21 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -0.45 Total: -2.37 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.21 Total: -46.82 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.16 Total: -19.33 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.19 -8.53 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721929185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.648 kcal (2) G-P(sol) polarization free energy of solvation -37.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds