Wall clock time and date at job start Tue Mar 31 2020 23:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36770 * 125.79901 * 2 1 4 4 C 1.47266 * 126.94341 * 359.97438 * 3 2 1 5 5 O 1.21623 * 119.99868 * 359.70865 * 4 3 2 6 6 N 1.34775 * 119.99637 * 179.70782 * 4 3 2 7 7 C 1.46506 * 119.99693 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.46660 * 35.00912 * 7 6 4 9 9 C 1.52997 * 109.47289 * 275.00198 * 7 6 4 10 10 C 1.52999 * 109.46684 * 155.00124 * 7 6 4 11 11 N 1.46496 * 109.47535 * 305.00097 * 10 7 6 12 12 C 1.34777 * 120.00105 * 180.02562 * 11 10 7 13 13 O 1.21282 * 119.99953 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00049 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.47074 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99858 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00045 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00246 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47154 * 89.99984 * 20 18 16 22 22 H 1.48498 * 109.46874 * 209.99668 * 20 18 16 23 23 H 1.48499 * 109.47057 * 330.00024 * 20 18 16 24 24 C 1.46689 * 106.11332 * 179.71815 * 3 2 1 25 25 C 1.34484 * 106.33216 * 0.26219 * 24 3 2 26 26 N 1.34652 * 125.80251 * 180.16823 * 2 1 3 27 27 C 1.46503 * 124.85317 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.46917 * 89.99566 * 1 2 3 29 29 H 1.08994 * 109.47310 * 209.99785 * 1 2 3 30 30 H 1.08998 * 109.47321 * 330.00153 * 1 2 3 31 31 H 0.97000 * 120.00190 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 33 33 H 1.09001 * 109.46832 * 60.00146 * 9 7 6 34 34 H 1.09004 * 109.47261 * 300.00128 * 9 7 6 35 35 H 1.08998 * 109.47565 * 65.00686 * 10 7 6 36 36 H 1.09000 * 109.46738 * 185.00167 * 10 7 6 37 37 H 0.97001 * 120.00379 * 0.02562 * 11 10 7 38 38 H 1.09000 * 109.47033 * 300.00347 * 14 12 11 39 39 H 1.09000 * 109.46983 * 60.00273 * 14 12 11 40 40 H 0.97001 * 120.00582 * 179.97438 * 19 18 16 41 41 H 1.07997 * 126.83189 * 180.30301 * 24 3 2 42 42 H 1.08007 * 125.57431 * 179.97438 * 25 24 3 43 43 H 1.09001 * 109.47422 * 270.31621 * 27 26 2 44 44 H 1.09007 * 109.46781 * 30.31519 * 27 26 2 45 45 H 1.08994 * 109.47308 * 150.30761 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 -0.0005 5 8 0.6839 2.7839 -0.0064 6 7 2.7849 3.5054 0.0055 7 6 2.3503 4.9045 0.0044 8 1 1.4354 5.0011 0.5890 9 6 2.0869 5.3556 -1.4336 10 6 3.4442 5.7787 0.6209 11 7 3.7805 5.2726 1.9539 12 6 4.7252 5.8900 2.6906 13 8 5.2966 6.8650 2.2502 14 6 5.0709 5.3697 4.0621 15 16 6.3650 6.4039 4.7913 16 6 6.5678 5.5922 6.3420 17 1 5.9701 4.7245 6.5796 18 6 7.4956 6.0678 7.2582 19 7 8.2244 7.1249 6.9685 20 14 7.7110 5.2068 8.9019 21 1 8.7474 4.1508 8.7756 22 1 8.1336 6.1950 9.9266 23 1 6.4233 4.5902 9.3103 24 6 3.6882 0.6152 0.0069 25 6 3.6095 -0.7274 0.0046 26 7 2.2947 -1.0921 -0.0032 27 6 1.8094 -2.4744 -0.0078 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.7310 3.2914 0.0098 32 1 1.7631 6.3965 -1.4344 33 1 1.3076 4.7328 -1.8728 34 1 3.0018 5.2589 -2.0182 35 1 4.3309 5.7518 -0.0124 36 1 3.0864 6.8052 0.7017 37 1 3.3234 4.4930 2.3063 38 1 4.1839 5.3966 4.6950 39 1 5.4288 4.3432 3.9816 40 1 8.8725 7.4576 7.6089 41 1 4.5889 1.2110 0.0134 42 1 4.4498 -1.4060 0.0079 43 1 1.6833 -2.8187 1.0187 44 1 0.8521 -2.5216 -0.5271 45 1 2.5315 -3.1113 -0.5186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721929185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:06 Heat of formation + Delta-G solvation = -60.179502 kcal Electronic energy + Delta-G solvation = -26228.832741 eV Core-core repulsion = 22372.066248 eV Total energy + Delta-G solvation = -3856.766494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.27599 -40.87530 -40.07619 -37.35685 -34.80900 -34.57340 -33.80049 -32.50779 -32.10836 -30.77324 -27.73466 -27.58554 -27.17448 -26.76528 -23.74442 -22.17770 -21.72248 -21.05894 -20.11783 -19.73855 -18.43771 -17.79025 -17.52595 -17.17773 -16.87277 -16.55900 -16.48189 -16.30694 -15.84248 -15.56289 -15.19530 -14.81061 -14.54715 -14.41460 -14.13949 -13.99480 -13.93679 -13.83516 -13.57672 -13.53712 -13.23304 -13.15847 -13.15250 -12.89311 -12.88201 -12.82712 -12.59468 -12.45989 -12.03590 -11.71975 -11.13660 -10.98373 -10.85449 -10.27387 -10.17095 -10.12235 -9.50571 -9.09049 -8.65500 -8.34000 -6.11739 0.76715 1.27157 1.42801 1.47026 1.52774 1.57827 1.60858 1.89090 2.22648 2.28607 2.45921 2.60646 3.00031 3.32656 3.59015 3.85085 3.96066 3.98452 4.03560 4.08866 4.23330 4.28494 4.30919 4.42101 4.43881 4.51617 4.59937 4.67258 4.73145 4.73941 4.75290 4.79254 4.95854 5.02099 5.08586 5.24145 5.29511 5.40298 5.42587 5.56279 5.83027 6.11942 6.20524 6.36826 6.43900 6.66273 7.07359 7.20892 7.36967 8.75153 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011046 B = 0.002430 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.343531 B =11520.748001 C =13430.819121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.271 4.271 4 C 0.592 3.408 5 O -0.584 6.584 6 N -0.716 5.716 7 C 0.144 3.856 8 H 0.085 0.915 9 C -0.154 4.154 10 C 0.116 3.884 11 N -0.713 5.713 12 C 0.537 3.463 13 O -0.561 6.561 14 C -0.131 4.131 15 S -0.146 6.146 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.260 1.260 24 C -0.183 4.183 25 C -0.015 4.015 26 N -0.444 5.444 27 C 0.058 3.942 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.409 0.591 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.411 0.589 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.155 0.845 42 H 0.196 0.804 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -21.678 -18.176 32.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.025 4.025 3 C -0.281 4.281 4 C 0.383 3.617 5 O -0.466 6.466 6 N -0.367 5.367 7 C 0.039 3.961 8 H 0.103 0.897 9 C -0.213 4.213 10 C -0.008 4.008 11 N -0.367 5.367 12 C 0.323 3.677 13 O -0.439 6.439 14 C -0.282 4.282 15 S 0.081 5.919 16 C -0.695 4.695 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.184 1.184 24 C -0.207 4.207 25 C -0.141 4.141 26 N -0.119 5.119 27 C -0.082 4.082 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.245 0.755 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.247 0.753 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.173 0.827 42 H 0.213 0.787 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.292 -20.101 -18.890 31.539 hybrid contribution 0.069 -1.506 1.595 2.195 sum -15.222 -21.607 -17.294 31.586 Atomic orbital electron populations 1.20506 0.86474 1.04132 1.03526 1.20574 0.94456 0.85776 1.01726 1.20215 0.94590 0.91613 1.21710 1.17574 0.84884 0.84821 0.74417 1.90704 1.17856 1.84968 1.53040 1.45813 1.10217 1.05134 1.75581 1.21084 0.96990 0.79969 0.98085 0.89665 1.22049 1.02523 1.02404 0.94285 1.21732 0.98228 0.98218 0.82579 1.45743 1.39941 1.33320 1.17716 1.19982 0.78996 0.82681 0.86066 1.90697 1.52893 1.27701 1.72638 1.23376 1.03836 1.04612 0.96407 1.85524 1.46677 1.41528 1.18165 1.23196 1.26610 1.17314 1.02333 0.90084 1.26115 0.94208 0.95700 1.03098 1.70175 1.23147 1.23908 1.37472 0.84961 0.79095 0.77865 0.76104 1.19193 1.20287 1.18360 1.22251 0.95396 0.94600 1.08425 1.22221 0.86185 0.96430 1.09267 1.43852 1.05881 1.07119 1.55059 1.22421 1.02873 0.78125 1.04773 0.90147 0.89621 0.90335 0.75519 0.89977 0.92678 0.91220 0.90510 0.90015 0.75251 0.87691 0.87240 0.91976 0.82747 0.78713 0.89631 0.88543 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.26 71.24 0.66 -0.70 16 2 C 0.09 1.70 6.89 41.78 0.29 1.98 16 3 C -0.27 -5.72 6.29 -19.04 -0.12 -5.84 16 4 C 0.59 13.90 7.77 86.62 0.67 14.57 16 5 O -0.58 -16.84 14.48 -4.10 -0.06 -16.90 16 6 N -0.72 -13.50 4.51 -445.95 -2.01 -15.51 16 7 C 0.14 2.69 2.73 44.99 0.12 2.81 16 8 H 0.09 1.83 7.58 -2.39 -0.02 1.81 16 9 C -0.15 -2.50 9.48 71.98 0.68 -1.82 16 10 C 0.12 2.50 5.23 86.38 0.45 2.95 16 11 N -0.71 -18.24 5.39 -463.07 -2.49 -20.73 16 12 C 0.54 19.67 7.85 87.66 0.69 20.36 16 13 O -0.56 -25.53 15.86 -3.04 -0.05 -25.58 16 14 C -0.13 -5.24 6.16 71.24 0.44 -4.81 16 15 S -0.15 -8.12 20.57 -56.49 -1.16 -9.29 16 16 C -0.55 -31.35 9.50 67.95 0.65 -30.71 16 17 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 18 C 0.01 0.78 5.49 84.86 0.47 1.24 16 19 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 20 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 C -0.18 -3.10 10.56 23.62 0.25 -2.85 16 25 C -0.01 -0.19 11.34 83.12 0.94 0.75 16 26 N -0.44 -5.75 3.09 -533.18 -1.65 -7.40 16 27 C 0.06 0.25 10.60 127.77 1.35 1.60 16 28 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.09 0.83 7.59 -2.39 -0.02 0.81 16 30 H 0.08 1.60 6.47 -2.39 -0.02 1.59 16 31 H 0.41 6.68 7.73 -92.71 -0.72 5.96 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.41 8.93 8.14 -92.71 -0.75 8.18 16 38 H 0.10 3.87 8.14 -2.39 -0.02 3.86 16 39 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.15 2.15 7.69 -2.91 -0.02 2.12 16 42 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.10 0.21 7.51 -2.38 -0.02 0.19 16 45 H 0.11 0.04 8.13 -2.39 -0.02 0.02 16 Total: -1.00 -82.76 395.44 1.98 -80.78 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.45 Total: 25.05 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 7.54 Total: -0.45 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -5.87 Total: -99.35 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.11 Total: -42.47 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.29 kcal Total: -82.76 1.98 -80.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721929185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.599 kcal (2) G-P(sol) polarization free energy of solvation -82.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds