Wall clock time and date at job start Tue Mar 31 2020 23:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36768 * 125.80131 * 2 1 4 4 C 1.47264 * 126.94045 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00407 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99742 * 180.02562 * 4 3 2 7 7 C 1.46492 * 119.99920 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47152 * 324.99856 * 7 6 4 9 9 C 1.53006 * 109.47363 * 84.99933 * 7 6 4 10 10 C 1.52999 * 109.47381 * 204.99632 * 7 6 4 11 11 N 1.46504 * 109.46785 * 54.99770 * 10 7 6 12 12 C 1.34773 * 119.99895 * 180.02562 * 11 10 7 13 13 O 1.21281 * 120.00530 * 0.02562 * 12 11 10 14 14 C 1.50707 * 120.00090 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47262 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99690 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00388 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31633 * 119.99720 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00158 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47424 * 89.99638 * 20 18 16 22 22 H 1.48504 * 109.47464 * 210.00077 * 20 18 16 23 23 H 1.48508 * 109.47130 * 329.99601 * 20 18 16 24 24 C 1.46685 * 106.11247 * 180.24556 * 3 2 1 25 25 C 1.34479 * 106.33579 * 359.62766 * 24 3 2 26 26 N 1.34659 * 125.79862 * 180.02562 * 2 1 3 27 27 C 1.46495 * 124.85470 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47212 * 90.00118 * 1 2 3 29 29 H 1.09002 * 109.47044 * 210.00397 * 1 2 3 30 30 H 1.09000 * 109.47029 * 330.00275 * 1 2 3 31 31 H 0.96998 * 119.99903 * 359.97438 * 6 4 3 32 32 H 1.09001 * 109.46998 * 299.99569 * 9 7 6 33 33 H 1.09000 * 109.47050 * 59.99860 * 9 7 6 34 34 H 1.09001 * 109.46801 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47903 * 174.99590 * 10 7 6 36 36 H 1.09002 * 109.47016 * 295.00356 * 10 7 6 37 37 H 0.96994 * 120.00002 * 0.02562 * 11 10 7 38 38 H 1.09000 * 109.47086 * 300.00446 * 14 12 11 39 39 H 1.09002 * 109.46844 * 60.00282 * 14 12 11 40 40 H 0.97007 * 119.99506 * 180.02562 * 19 18 16 41 41 H 1.08007 * 126.83030 * 179.74315 * 24 3 2 42 42 H 1.08002 * 125.57323 * 180.16693 * 25 24 3 43 43 H 1.09004 * 109.47013 * 90.00077 * 27 26 2 44 44 H 1.09000 * 109.47239 * 210.00600 * 27 26 2 45 45 H 1.09006 * 109.47273 * 330.00395 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0006 6 7 2.7850 3.5054 -0.0010 7 6 2.3504 4.9044 -0.0009 8 1 1.4385 5.0016 -0.5900 9 6 2.0796 5.3543 1.4362 10 6 3.4474 5.7793 -0.6110 11 7 3.7907 5.2742 -1.9427 12 6 4.7398 5.8917 -2.6735 13 8 5.3102 6.8652 -2.2287 14 6 5.0926 5.3725 -4.0437 15 16 6.3904 6.4074 -4.7654 16 6 6.6011 5.5969 -6.3156 17 1 6.0047 4.7295 -6.5570 18 6 7.5344 6.0728 -7.2263 19 7 8.2623 7.1291 -6.9314 20 14 7.7573 5.2141 -8.8701 21 1 6.8411 5.8164 -9.8716 22 1 9.1619 5.3733 -9.3254 23 1 7.4463 3.7697 -8.7203 24 6 3.6882 0.6151 -0.0060 25 6 3.6096 -0.7274 -0.0007 26 7 2.2947 -1.0922 -0.0005 27 6 1.8094 -2.4744 -0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 3.7311 3.2914 -0.0006 32 1 1.2980 4.7312 1.8708 33 1 2.9915 5.2571 2.0253 34 1 1.7567 6.3954 1.4361 35 1 3.0902 6.8058 -0.6928 36 1 4.3309 5.7517 0.0269 37 1 3.3348 4.4954 -2.2983 38 1 5.4492 4.3457 -3.9624 39 1 4.2091 5.4009 -4.6815 40 1 8.9142 7.4619 -7.5680 41 1 4.5890 1.2109 -0.0116 42 1 4.4498 -1.4060 -0.0005 43 1 1.6887 -2.8170 -1.0283 44 1 2.5289 -3.1122 0.5130 45 1 0.8494 -2.5225 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721952099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:11 Heat of formation + Delta-G solvation = -33.773262 kcal Electronic energy + Delta-G solvation = -26228.074776 eV Core-core repulsion = 22372.453342 eV Total energy + Delta-G solvation = -3855.621433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66360 -39.76474 -38.86837 -36.30869 -33.65833 -33.16739 -32.41143 -31.88676 -31.18817 -29.33066 -27.05037 -26.61845 -25.91666 -25.33847 -22.99015 -21.38098 -20.31501 -20.28233 -19.36183 -17.92168 -17.65430 -16.54964 -16.27695 -16.20184 -16.01062 -15.48419 -15.01064 -14.79855 -14.78517 -14.48875 -14.00127 -13.78202 -13.45160 -13.38494 -13.31615 -13.05358 -12.94471 -12.86208 -12.77339 -12.73652 -12.47915 -12.37335 -12.08927 -11.83422 -11.73847 -11.17185 -11.05122 -11.00630 -10.74591 -9.94333 -9.80104 -9.41862 -9.25651 -9.05555 -8.89990 -8.88176 -8.43802 -8.21709 -6.48019 -6.20174 -3.90352 1.51235 2.14154 2.42243 3.02232 3.10785 3.20656 3.23535 3.29506 3.34285 3.42313 3.75966 4.22033 4.27522 4.42229 4.49262 4.59180 4.63079 4.82866 4.92766 4.95559 5.01226 5.10659 5.14981 5.19442 5.25228 5.35286 5.43442 5.52159 5.58118 5.59333 5.68138 5.75668 5.83466 5.91846 5.94476 6.02300 6.17415 6.37062 6.48660 6.61954 6.73946 6.89716 7.46637 7.61313 7.72124 8.22134 8.36970 8.62847 9.25229 10.87242 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.002430 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.544155 B =11520.951216 C =13431.770534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.106 3.894 3 C -0.240 4.240 4 C 0.596 3.404 5 O -0.552 6.552 6 N -0.723 5.723 7 C 0.134 3.866 8 H 0.095 0.905 9 C -0.160 4.160 10 C 0.113 3.887 11 N -0.738 5.738 12 C 0.532 3.468 13 O -0.518 6.518 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.165 4.165 25 C -0.018 4.018 26 N -0.446 5.446 27 C 0.067 3.933 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.402 0.598 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.400 0.600 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.146 0.854 42 H 0.167 0.833 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.951 -18.866 18.217 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 C -0.250 4.250 4 C 0.385 3.615 5 O -0.432 6.432 6 N -0.375 5.375 7 C 0.029 3.971 8 H 0.113 0.887 9 C -0.218 4.218 10 C -0.011 4.011 11 N -0.394 5.394 12 C 0.318 3.682 13 O -0.392 6.392 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.188 4.188 25 C -0.144 4.144 26 N -0.122 5.122 27 C -0.075 4.075 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.237 0.763 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.234 0.766 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.164 0.836 42 H 0.185 0.815 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.776 -17.245 18.908 29.551 hybrid contribution -0.039 -2.289 -1.772 2.896 sum -14.816 -19.534 17.136 29.912 Atomic orbital electron populations 1.20573 0.87126 1.03975 1.03441 1.20323 0.93739 0.85207 1.01847 1.20068 0.93256 0.91856 1.19823 1.17322 0.85186 0.84030 0.74929 1.90727 1.16632 1.84439 1.51379 1.45879 1.10074 1.05436 1.76130 1.21199 0.98178 0.80185 0.97572 0.88682 1.22104 1.02428 1.01929 0.95385 1.21616 0.97524 0.97952 0.84056 1.45995 1.41666 1.34006 1.17696 1.20304 0.78397 0.83023 0.86445 1.90704 1.51111 1.25767 1.71617 1.23531 1.05950 1.05361 0.95552 1.85376 1.42600 1.38241 1.17112 1.22870 1.26010 1.17143 1.02275 0.90952 1.24993 0.94795 0.95089 0.98738 1.70024 1.22244 1.22213 1.35831 0.86170 0.77593 0.79582 0.82159 1.20282 1.20770 1.19708 1.22043 0.95779 0.93644 1.07379 1.21719 0.85338 0.96355 1.10944 1.43568 1.06095 1.06148 1.56439 1.22111 1.01695 0.80028 1.03671 0.90426 0.92053 0.88058 0.76276 0.91607 0.92114 0.91223 0.90044 0.90987 0.76618 0.89246 0.89260 0.92208 0.83584 0.81528 0.90538 0.89526 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.52 36.01 0.34 -0.40 16 2 C 0.11 1.01 6.89 -81.88 -0.56 0.45 16 3 C -0.24 -2.59 6.29 -103.35 -0.65 -3.24 16 4 C 0.60 7.01 7.77 -12.59 -0.10 6.91 16 5 O -0.55 -7.82 14.47 5.26 0.08 -7.75 16 6 N -0.72 -7.08 4.51 -54.93 -0.25 -7.33 16 7 C 0.13 1.31 2.73 -67.93 -0.19 1.12 16 8 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 9 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 10 C 0.11 1.28 5.23 -4.04 -0.02 1.26 16 11 N -0.74 -9.93 5.39 -60.29 -0.32 -10.26 16 12 C 0.53 9.92 7.85 -10.98 -0.09 9.83 16 13 O -0.52 -11.67 15.86 5.56 0.09 -11.59 16 14 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 16 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 20 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.16 -1.49 10.56 -37.50 -0.40 -1.89 16 25 C -0.02 -0.14 11.34 -16.83 -0.19 -0.33 16 26 N -0.45 -3.37 3.09 -119.88 -0.37 -3.74 16 27 C 0.07 0.24 10.82 59.84 0.65 0.89 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.33 6.92 -51.93 -0.36 -0.03 16 30 H 0.10 0.98 6.47 -51.93 -0.34 0.65 16 31 H 0.40 3.50 7.73 -40.82 -0.32 3.18 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 4.70 8.14 -40.82 -0.33 4.37 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.15 1.10 7.70 -52.48 -0.40 0.70 16 42 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.09 0.17 8.13 -51.93 -0.42 -0.26 16 45 H 0.08 0.21 6.88 -51.93 -0.36 -0.15 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -37.20 394.61 -8.45 -45.65 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.69 Total: 4.29 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -0.43 Total: -2.35 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.21 Total: -46.84 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.16 Total: -19.33 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.20 -8.45 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721952099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.879 kcal (2) G-P(sol) polarization free energy of solvation -37.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds