Wall clock time and date at job start Tue Mar 31 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36768 * 125.80131 * 2 1 4 4 C 1.47264 * 126.94045 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00407 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99742 * 180.02562 * 4 3 2 7 7 C 1.46492 * 119.99920 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47152 * 324.99856 * 7 6 4 9 9 C 1.53006 * 109.47363 * 84.99933 * 7 6 4 10 10 C 1.52999 * 109.47381 * 204.99632 * 7 6 4 11 11 N 1.46504 * 109.46785 * 54.99770 * 10 7 6 12 12 C 1.34773 * 119.99895 * 180.02562 * 11 10 7 13 13 O 1.21281 * 120.00530 * 0.02562 * 12 11 10 14 14 C 1.50707 * 120.00090 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47262 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99690 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00388 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99808 * 180.02562 * 16 15 14 19 19 N 1.31633 * 119.99720 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00158 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47424 * 89.99638 * 20 18 16 22 22 H 1.48504 * 109.47464 * 210.00077 * 20 18 16 23 23 H 1.48508 * 109.47130 * 329.99601 * 20 18 16 24 24 C 1.46685 * 106.11247 * 180.24556 * 3 2 1 25 25 C 1.34479 * 106.33579 * 359.62766 * 24 3 2 26 26 N 1.34659 * 125.79862 * 180.02562 * 2 1 3 27 27 C 1.46495 * 124.85470 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47212 * 90.00118 * 1 2 3 29 29 H 1.09002 * 109.47044 * 210.00397 * 1 2 3 30 30 H 1.09000 * 109.47029 * 330.00275 * 1 2 3 31 31 H 0.96998 * 119.99903 * 359.97438 * 6 4 3 32 32 H 1.09001 * 109.46998 * 299.99569 * 9 7 6 33 33 H 1.09000 * 109.47050 * 59.99860 * 9 7 6 34 34 H 1.09001 * 109.46801 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47903 * 174.99590 * 10 7 6 36 36 H 1.09002 * 109.47016 * 295.00356 * 10 7 6 37 37 H 0.96994 * 120.00002 * 0.02562 * 11 10 7 38 38 H 1.09000 * 109.47086 * 300.00446 * 14 12 11 39 39 H 1.09002 * 109.46844 * 60.00282 * 14 12 11 40 40 H 0.97007 * 119.99506 * 180.02562 * 19 18 16 41 41 H 1.08007 * 126.83030 * 179.74315 * 24 3 2 42 42 H 1.08002 * 125.57323 * 180.16693 * 25 24 3 43 43 H 1.09004 * 109.47013 * 90.00077 * 27 26 2 44 44 H 1.09000 * 109.47239 * 210.00600 * 27 26 2 45 45 H 1.09006 * 109.47273 * 330.00395 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0006 6 7 2.7850 3.5054 -0.0010 7 6 2.3504 4.9044 -0.0009 8 1 1.4385 5.0016 -0.5900 9 6 2.0796 5.3543 1.4362 10 6 3.4474 5.7793 -0.6110 11 7 3.7907 5.2742 -1.9427 12 6 4.7398 5.8917 -2.6735 13 8 5.3102 6.8652 -2.2287 14 6 5.0926 5.3725 -4.0437 15 16 6.3904 6.4074 -4.7654 16 6 6.6011 5.5969 -6.3156 17 1 6.0047 4.7295 -6.5570 18 6 7.5344 6.0728 -7.2263 19 7 8.2623 7.1291 -6.9314 20 14 7.7573 5.2141 -8.8701 21 1 6.8411 5.8164 -9.8716 22 1 9.1619 5.3733 -9.3254 23 1 7.4463 3.7697 -8.7203 24 6 3.6882 0.6151 -0.0060 25 6 3.6096 -0.7274 -0.0007 26 7 2.2947 -1.0922 -0.0005 27 6 1.8094 -2.4744 -0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 3.7311 3.2914 -0.0006 32 1 1.2980 4.7312 1.8708 33 1 2.9915 5.2571 2.0253 34 1 1.7567 6.3954 1.4361 35 1 3.0902 6.8058 -0.6928 36 1 4.3309 5.7517 0.0269 37 1 3.3348 4.4954 -2.2983 38 1 5.4492 4.3457 -3.9624 39 1 4.2091 5.4009 -4.6815 40 1 8.9142 7.4619 -7.5680 41 1 4.5890 1.2109 -0.0116 42 1 4.4498 -1.4060 -0.0005 43 1 1.6887 -2.8170 -1.0283 44 1 2.5289 -3.1122 0.5130 45 1 0.8494 -2.5225 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721952099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:10 Heat of formation + Delta-G solvation = -59.922039 kcal Electronic energy + Delta-G solvation = -26229.208672 eV Core-core repulsion = 22372.453342 eV Total energy + Delta-G solvation = -3856.755329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27738 -40.87564 -40.07633 -37.35687 -34.80938 -34.57255 -33.80380 -32.51002 -32.10865 -30.77298 -27.73439 -27.58204 -27.18178 -26.76523 -23.74382 -22.17765 -21.72285 -21.06038 -20.11590 -19.73849 -18.43879 -17.79117 -17.52629 -17.17986 -16.87287 -16.57002 -16.48203 -16.32240 -15.84725 -15.53829 -15.22577 -14.81140 -14.55073 -14.41656 -14.11773 -14.05711 -13.87887 -13.83990 -13.61776 -13.48206 -13.23886 -13.15874 -13.13322 -12.91156 -12.88424 -12.83531 -12.59298 -12.44449 -12.03608 -11.71824 -11.13821 -10.98383 -10.85152 -10.27438 -10.17058 -10.12378 -9.50639 -9.09150 -8.65544 -8.34116 -6.11772 0.76889 1.27130 1.42739 1.47035 1.52835 1.57698 1.60835 1.88976 2.22594 2.28568 2.45863 2.60609 2.99940 3.32606 3.59035 3.85028 3.95847 3.98401 4.03903 4.08843 4.20997 4.28440 4.30964 4.41206 4.44528 4.51557 4.59969 4.65688 4.73576 4.74388 4.75563 4.79331 4.95810 5.02113 5.09807 5.24154 5.29347 5.40250 5.42541 5.56318 5.83030 6.12031 6.20470 6.36742 6.43894 6.66242 7.07256 7.20856 7.36959 8.75037 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.002430 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.544155 B =11520.951216 C =13431.770534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.272 4.272 4 C 0.592 3.408 5 O -0.584 6.584 6 N -0.716 5.716 7 C 0.144 3.856 8 H 0.085 0.915 9 C -0.154 4.154 10 C 0.116 3.884 11 N -0.713 5.713 12 C 0.537 3.463 13 O -0.561 6.561 14 C -0.131 4.131 15 S -0.146 6.146 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.258 1.258 24 C -0.183 4.183 25 C -0.015 4.015 26 N -0.443 5.443 27 C 0.058 3.942 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.409 0.591 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.271 0.729 41 H 0.155 0.845 42 H 0.196 0.804 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.555 -21.692 18.125 32.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.025 4.025 3 C -0.282 4.282 4 C 0.383 3.617 5 O -0.466 6.466 6 N -0.367 5.367 7 C 0.039 3.961 8 H 0.103 0.897 9 C -0.213 4.213 10 C -0.008 4.008 11 N -0.367 5.367 12 C 0.323 3.677 13 O -0.439 6.439 14 C -0.282 4.282 15 S 0.081 5.919 16 C -0.695 4.695 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.182 1.182 24 C -0.206 4.206 25 C -0.141 4.141 26 N -0.119 5.119 27 C -0.082 4.082 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.245 0.755 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.247 0.753 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.173 0.827 42 H 0.213 0.787 43 H 0.103 0.897 44 H 0.125 0.875 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.404 -20.120 18.842 31.577 hybrid contribution 0.068 -1.494 -1.631 2.213 sum -15.337 -21.613 17.211 31.600 Atomic orbital electron populations 1.20517 0.86475 1.04201 1.03450 1.20573 0.94461 0.85782 1.01722 1.20210 0.94584 0.91612 1.21749 1.17575 0.84884 0.84819 0.74413 1.90704 1.17856 1.84962 1.53051 1.45811 1.10215 1.05135 1.75583 1.21083 0.96952 0.79970 0.98129 0.89668 1.22052 1.02509 1.02409 0.94295 1.21736 0.98153 0.98226 0.82644 1.45744 1.39673 1.33385 1.17920 1.19980 0.79024 0.82660 0.86061 1.90697 1.53092 1.27780 1.72360 1.23378 1.03802 1.04602 0.96452 1.85523 1.46398 1.41527 1.18438 1.23198 1.26371 1.17369 1.02516 0.90082 1.26120 0.94199 0.95733 1.03086 1.70183 1.23050 1.23984 1.37479 0.84960 0.77735 0.78798 0.76521 1.19418 1.20201 1.18223 1.22250 0.95398 0.94603 1.08398 1.22218 0.86177 0.96428 1.09306 1.43848 1.05883 1.07126 1.55025 1.22428 1.02899 0.78111 1.04785 0.90460 0.89401 0.90219 0.75523 0.92662 0.91226 0.89977 0.90010 0.90509 0.75254 0.87258 0.87681 0.91980 0.82748 0.78716 0.89651 0.87486 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.52 71.24 0.68 -0.68 16 2 C 0.09 1.69 6.89 41.78 0.29 1.98 16 3 C -0.27 -5.73 6.29 -19.04 -0.12 -5.85 16 4 C 0.59 13.91 7.77 86.62 0.67 14.58 16 5 O -0.58 -16.84 14.47 -4.11 -0.06 -16.90 16 6 N -0.72 -13.51 4.51 -445.95 -2.01 -15.52 16 7 C 0.14 2.68 2.73 44.99 0.12 2.81 16 8 H 0.09 1.83 7.58 -2.39 -0.02 1.81 16 9 C -0.15 -2.50 9.48 71.98 0.68 -1.82 16 10 C 0.12 2.50 5.23 86.38 0.45 2.95 16 11 N -0.71 -18.25 5.39 -463.05 -2.49 -20.75 16 12 C 0.54 19.68 7.85 87.66 0.69 20.37 16 13 O -0.56 -25.53 15.86 -3.03 -0.05 -25.58 16 14 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 15 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 16 C -0.55 -31.36 9.50 67.96 0.65 -30.71 16 17 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 18 C 0.01 0.77 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.99 13.22 21.65 0.29 -55.71 16 20 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 C -0.18 -3.10 10.56 23.62 0.25 -2.85 16 25 C -0.02 -0.20 11.34 83.11 0.94 0.74 16 26 N -0.44 -5.75 3.09 -533.19 -1.65 -7.40 16 27 C 0.06 0.25 10.82 127.77 1.38 1.63 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 0.79 6.92 -2.39 -0.02 0.78 16 30 H 0.08 1.59 6.47 -2.39 -0.02 1.57 16 31 H 0.41 6.69 7.73 -92.71 -0.72 5.97 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.41 8.95 8.14 -92.71 -0.75 8.19 16 38 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 39 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 41 H 0.15 2.15 7.70 -2.91 -0.02 2.13 16 42 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.11 0.04 8.13 -2.39 -0.02 0.02 16 45 H 0.10 0.19 6.88 -2.38 -0.02 0.18 16 Total: -1.00 -82.79 394.61 2.03 -80.76 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.45 Total: 25.05 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 7.59 Total: -0.42 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -5.87 Total: -99.38 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.11 Total: -42.48 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -82.79 2.03 -80.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721952099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.839 kcal (2) G-P(sol) polarization free energy of solvation -82.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds