Wall clock time and date at job start Tue Mar 31 2020 23:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70445 * 124.58942 * 2 1 4 4 C 1.75502 * 92.44408 * 179.73438 * 3 2 1 5 5 C 1.32775 * 110.57712 * 0.02562 * 4 3 2 6 6 C 1.36004 * 124.58936 * 179.69800 * 2 1 3 7 7 C 1.47187 * 123.46426 * 0.23026 * 6 2 1 8 8 O 1.21639 * 119.99824 * 319.48496 * 7 6 2 9 9 N 1.34774 * 120.00205 * 139.48122 * 7 6 2 10 10 C 1.46498 * 120.00263 * 4.66176 * 9 7 6 11 11 C 1.46501 * 120.00399 * 184.66051 * 9 7 6 12 12 C 1.53009 * 109.47074 * 90.00088 * 11 9 7 13 13 C 1.52996 * 109.47051 * 180.02562 * 12 11 9 14 14 N 1.46901 * 109.46965 * 179.97438 * 13 12 11 15 15 C 1.46904 * 110.99912 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46967 * 180.02562 * 15 14 13 17 17 O 1.21296 * 119.99795 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00101 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00445 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99555 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00255 * 180.02562 * 19 18 16 22 22 N 1.31403 * 119.99993 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99872 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47432 * 89.99936 * 23 21 19 25 25 H 1.48500 * 109.46897 * 210.00088 * 23 21 19 26 26 H 1.48507 * 109.47054 * 329.99794 * 23 21 19 27 27 H 1.08995 * 109.46996 * 0.02846 * 1 2 3 28 28 H 1.09007 * 109.46741 * 120.02219 * 1 2 3 29 29 H 1.09000 * 109.47321 * 240.02404 * 1 2 3 30 30 H 1.08001 * 124.71346 * 179.97438 * 4 3 2 31 31 H 1.08004 * 123.46285 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47208 * 84.37311 * 10 9 7 33 33 H 1.08992 * 109.47788 * 204.37889 * 10 9 7 34 34 H 1.09000 * 109.46794 * 324.38301 * 10 9 7 35 35 H 1.09000 * 109.47792 * 210.00083 * 11 9 7 36 36 H 1.08998 * 109.47023 * 330.00370 * 11 9 7 37 37 H 1.09009 * 109.46689 * 300.00439 * 12 11 9 38 38 H 1.08998 * 109.46965 * 60.00247 * 12 11 9 39 39 H 1.09000 * 109.47443 * 299.99767 * 13 12 11 40 40 H 1.08998 * 109.47394 * 60.00068 * 13 12 11 41 41 H 1.00903 * 110.99806 * 56.04516 * 14 13 12 42 42 H 1.08996 * 109.46858 * 300.00013 * 15 14 13 43 43 H 1.08998 * 109.47069 * 60.00313 * 15 14 13 44 44 H 0.97003 * 119.99926 * 0.02562 * 18 16 15 45 45 H 0.97004 * 120.00537 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4694 0.0081 5 6 3.6943 -0.8314 0.0100 6 6 2.2791 -1.1196 0.0059 7 6 1.7290 -2.4848 0.0082 8 8 0.7567 -2.7476 0.6901 9 7 2.3026 -3.4438 -0.7454 10 6 3.5327 -3.1550 -1.4867 11 6 1.6961 -4.7751 -0.8232 12 6 0.7016 -4.8153 -1.9852 13 6 0.0677 -6.2054 -2.0661 14 7 -0.8876 -6.2439 -3.1813 15 6 -1.5169 -7.5668 -3.2902 16 6 -2.4877 -7.5681 -4.4428 17 8 -2.6400 -6.5656 -5.1085 18 7 -3.1859 -8.6833 -4.7347 19 6 -4.0694 -8.6843 -5.7829 20 1 -4.2057 -7.7914 -6.3751 21 6 -4.7896 -9.8339 -6.0834 22 7 -4.6242 -10.9201 -5.3626 23 14 -5.9930 -9.8354 -7.5122 24 1 -5.2891 -10.2514 -8.7519 25 1 -7.0980 -10.7858 -7.2277 26 1 -6.5486 -8.4701 -7.6929 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5142 -0.8899 29 1 -0.3634 -0.5135 0.8902 30 1 4.9537 0.8938 0.0104 31 1 4.4576 -1.5955 0.0152 32 1 4.3925 -3.2891 -0.8304 33 1 3.6138 -3.8344 -2.3351 34 1 3.5072 -2.1262 -1.8462 35 1 2.4748 -5.5203 -0.9855 36 1 1.1746 -4.9917 0.1091 37 1 -0.0772 -4.0700 -1.8228 38 1 1.2231 -4.5987 -2.9175 39 1 0.8462 -6.9509 -2.2282 40 1 -0.4539 -6.4217 -1.1338 41 1 -0.4419 -5.9833 -4.0483 42 1 -0.7491 -8.3213 -3.4614 43 1 -2.0491 -7.7931 -2.3662 44 1 -3.0638 -9.4851 -4.2026 45 1 -5.1273 -11.7226 -5.5721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723014574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:01 Heat of formation + Delta-G solvation = -39.400440 kcal Electronic energy + Delta-G solvation = -25800.983079 eV Core-core repulsion = 21945.117633 eV Total energy + Delta-G solvation = -3855.865446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46445 -38.29027 -37.47533 -36.49811 -35.41393 -33.85579 -32.36682 -31.85837 -31.14942 -28.06661 -27.61966 -26.40954 -25.04927 -23.94951 -22.96484 -21.65896 -20.96423 -19.19981 -19.01846 -17.85568 -17.61515 -16.82998 -16.53915 -16.09040 -15.66935 -15.57311 -14.98068 -14.59464 -14.37475 -14.27237 -14.13040 -13.96438 -13.63495 -13.44216 -13.33993 -13.21519 -12.88453 -12.78135 -12.56715 -12.25869 -12.03611 -11.95204 -11.82424 -11.67310 -11.46052 -11.37114 -11.32963 -11.02870 -10.73516 -10.37574 -10.19764 -10.07523 -9.48797 -9.18332 -8.95086 -8.78580 -8.42813 -8.01645 -7.93179 -6.39461 -3.80194 0.48649 1.11877 1.49965 1.70442 2.67493 2.93314 3.19451 3.27875 3.34280 3.93834 4.12794 4.26436 4.32802 4.38345 4.66332 4.78882 4.82501 4.94098 4.96596 5.10203 5.15736 5.19820 5.27050 5.28825 5.32747 5.34366 5.41336 5.49100 5.54102 5.60395 5.70484 5.80801 5.82707 5.88333 6.02087 6.08268 6.12783 6.29922 6.34911 7.07216 7.26864 7.57359 7.70829 7.92715 8.08921 8.63998 9.20250 9.56973 10.08692 10.78340 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.001621 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.245143 B =17264.095993 C =17822.963394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.146 4.146 3 S 0.178 5.822 4 C -0.238 4.238 5 C -0.106 4.106 6 C -0.173 4.173 7 C 0.582 3.418 8 O -0.528 6.528 9 N -0.610 5.610 10 C 0.076 3.924 11 C 0.117 3.883 12 C -0.131 4.131 13 C 0.063 3.937 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.151 0.849 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.348 0.652 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.770 19.595 13.022 32.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.266 4.266 3 S 0.443 5.557 4 C -0.373 4.373 5 C -0.136 4.136 6 C -0.189 4.189 7 C 0.368 3.632 8 O -0.405 6.405 9 N -0.343 5.343 10 C -0.067 4.067 11 C -0.006 4.006 12 C -0.170 4.170 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.186 0.814 31 H 0.169 0.831 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.167 0.833 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.246 21.744 13.275 32.541 hybrid contribution 0.726 -2.768 -0.813 2.975 sum 20.972 18.976 12.462 30.906 Atomic orbital electron populations 1.20477 0.86752 1.02826 1.04755 1.24476 1.01754 0.96852 1.03500 1.83120 0.94941 1.07274 1.70334 1.25414 1.02366 0.97208 1.12343 1.21360 0.94437 0.96362 1.01409 1.20072 0.93002 0.93617 1.12244 1.17648 0.82719 0.83664 0.79128 1.90809 1.26679 1.81707 1.41296 1.47691 1.26618 1.12288 1.47723 1.22024 0.85704 1.02680 0.96324 1.21493 0.96451 0.82347 1.00296 1.21895 0.98710 0.98332 0.98057 1.21855 0.93658 0.95316 0.95865 1.60042 1.34400 1.27731 1.07985 1.21672 0.97110 0.89970 0.99426 1.19832 0.85413 0.84690 0.87423 1.90520 1.69271 1.33370 1.53604 1.41863 1.36926 1.11682 1.29631 1.19709 1.16576 0.99058 1.07528 0.87935 1.25261 0.98771 0.94927 0.99034 1.69610 1.42591 1.02219 1.39933 0.85852 0.79534 0.78273 0.80589 1.20455 1.20923 1.19408 0.91254 0.90013 0.88885 0.81432 0.83148 0.92509 0.90674 0.90627 0.90428 0.89382 0.90507 0.91935 0.95567 0.90883 0.83310 0.93919 0.89561 0.77448 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.34 36.01 0.34 -0.49 16 2 C -0.15 -1.37 6.33 -35.11 -0.22 -1.59 16 3 S 0.18 1.19 22.95 -107.50 -2.47 -1.28 16 4 C -0.24 -1.42 11.12 28.86 0.32 -1.09 16 5 C -0.11 -0.75 8.12 -39.02 -0.32 -1.07 16 6 C -0.17 -1.71 5.17 -104.63 -0.54 -2.25 16 7 C 0.58 6.94 7.23 -12.63 -0.09 6.85 16 8 O -0.53 -8.10 15.31 5.24 0.08 -8.02 16 9 N -0.61 -5.85 2.87 -182.94 -0.53 -6.37 16 10 C 0.08 0.46 9.01 59.85 0.54 1.00 16 11 C 0.12 1.13 5.42 -4.04 -0.02 1.11 16 12 C -0.13 -1.50 5.80 -26.73 -0.15 -1.66 16 13 C 0.06 0.81 5.69 -3.83 -0.02 0.78 16 14 N -0.67 -11.37 6.13 -115.06 -0.70 -12.08 16 15 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 16 C 0.44 10.74 7.82 -10.99 -0.09 10.65 16 17 O -0.58 -16.32 15.78 5.54 0.09 -16.23 16 18 N -0.56 -14.63 5.29 -10.96 -0.06 -14.69 16 19 C -0.30 -8.50 9.68 -14.94 -0.14 -8.65 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 23 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.97 7.56 -51.93 -0.39 0.58 16 30 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.15 0.76 6.07 -52.48 -0.32 0.44 16 32 H 0.06 0.25 7.05 -51.93 -0.37 -0.12 16 33 H 0.07 0.39 8.03 -51.93 -0.42 -0.03 16 34 H 0.08 0.45 6.00 -51.93 -0.31 0.14 16 35 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.09 0.98 7.36 -51.93 -0.38 0.60 16 37 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.35 6.00 8.43 -39.29 -0.33 5.67 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -34.68 389.74 -9.12 -43.80 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.57 Total: 11.82 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.53 Total: 4.99 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.56 Total: -57.26 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.17 Total: -24.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.47 Total: -1.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.68 -9.12 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723014574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.404 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds