Wall clock time and date at job start Tue Mar 31 2020 23:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70445 * 124.58942 * 2 1 4 4 C 1.75502 * 92.44408 * 179.73438 * 3 2 1 5 5 C 1.32775 * 110.57712 * 0.02562 * 4 3 2 6 6 C 1.36004 * 124.58936 * 179.69800 * 2 1 3 7 7 C 1.47187 * 123.46426 * 0.23026 * 6 2 1 8 8 O 1.21639 * 119.99824 * 319.48496 * 7 6 2 9 9 N 1.34774 * 120.00205 * 139.48122 * 7 6 2 10 10 C 1.46498 * 120.00263 * 4.66176 * 9 7 6 11 11 C 1.46501 * 120.00399 * 184.66051 * 9 7 6 12 12 C 1.53009 * 109.47074 * 90.00088 * 11 9 7 13 13 C 1.52996 * 109.47051 * 180.02562 * 12 11 9 14 14 N 1.46901 * 109.46965 * 179.97438 * 13 12 11 15 15 C 1.46904 * 110.99912 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46967 * 180.02562 * 15 14 13 17 17 O 1.21296 * 119.99795 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00101 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00445 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99555 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00255 * 180.02562 * 19 18 16 22 22 N 1.31403 * 119.99993 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99872 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47432 * 89.99936 * 23 21 19 25 25 H 1.48500 * 109.46897 * 210.00088 * 23 21 19 26 26 H 1.48507 * 109.47054 * 329.99794 * 23 21 19 27 27 H 1.08995 * 109.46996 * 0.02846 * 1 2 3 28 28 H 1.09007 * 109.46741 * 120.02219 * 1 2 3 29 29 H 1.09000 * 109.47321 * 240.02404 * 1 2 3 30 30 H 1.08001 * 124.71346 * 179.97438 * 4 3 2 31 31 H 1.08004 * 123.46285 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47208 * 84.37311 * 10 9 7 33 33 H 1.08992 * 109.47788 * 204.37889 * 10 9 7 34 34 H 1.09000 * 109.46794 * 324.38301 * 10 9 7 35 35 H 1.09000 * 109.47792 * 210.00083 * 11 9 7 36 36 H 1.08998 * 109.47023 * 330.00370 * 11 9 7 37 37 H 1.09009 * 109.46689 * 300.00439 * 12 11 9 38 38 H 1.08998 * 109.46965 * 60.00247 * 12 11 9 39 39 H 1.09000 * 109.47443 * 299.99767 * 13 12 11 40 40 H 1.08998 * 109.47394 * 60.00068 * 13 12 11 41 41 H 1.00903 * 110.99806 * 56.04516 * 14 13 12 42 42 H 1.08996 * 109.46858 * 300.00013 * 15 14 13 43 43 H 1.08998 * 109.47069 * 60.00313 * 15 14 13 44 44 H 0.97003 * 119.99926 * 0.02562 * 18 16 15 45 45 H 0.97004 * 120.00537 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4694 0.0081 5 6 3.6943 -0.8314 0.0100 6 6 2.2791 -1.1196 0.0059 7 6 1.7290 -2.4848 0.0082 8 8 0.7567 -2.7476 0.6901 9 7 2.3026 -3.4438 -0.7454 10 6 3.5327 -3.1550 -1.4867 11 6 1.6961 -4.7751 -0.8232 12 6 0.7016 -4.8153 -1.9852 13 6 0.0677 -6.2054 -2.0661 14 7 -0.8876 -6.2439 -3.1813 15 6 -1.5169 -7.5668 -3.2902 16 6 -2.4877 -7.5681 -4.4428 17 8 -2.6400 -6.5656 -5.1085 18 7 -3.1859 -8.6833 -4.7347 19 6 -4.0694 -8.6843 -5.7829 20 1 -4.2057 -7.7914 -6.3751 21 6 -4.7896 -9.8339 -6.0834 22 7 -4.6242 -10.9201 -5.3626 23 14 -5.9930 -9.8354 -7.5122 24 1 -5.2891 -10.2514 -8.7519 25 1 -7.0980 -10.7858 -7.2277 26 1 -6.5486 -8.4701 -7.6929 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5142 -0.8899 29 1 -0.3634 -0.5135 0.8902 30 1 4.9537 0.8938 0.0104 31 1 4.4576 -1.5955 0.0152 32 1 4.3925 -3.2891 -0.8304 33 1 3.6138 -3.8344 -2.3351 34 1 3.5072 -2.1262 -1.8462 35 1 2.4748 -5.5203 -0.9855 36 1 1.1746 -4.9917 0.1091 37 1 -0.0772 -4.0700 -1.8228 38 1 1.2231 -4.5987 -2.9175 39 1 0.8462 -6.9509 -2.2282 40 1 -0.4539 -6.4217 -1.1338 41 1 -0.4419 -5.9833 -4.0483 42 1 -0.7491 -8.3213 -3.4614 43 1 -2.0491 -7.7931 -2.3662 44 1 -3.0638 -9.4851 -4.2026 45 1 -5.1273 -11.7226 -5.5721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723014574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:00 Heat of formation + Delta-G solvation = -64.385170 kcal Electronic energy + Delta-G solvation = -25802.066498 eV Core-core repulsion = 21945.117633 eV Total energy + Delta-G solvation = -3856.948865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25222 -40.17803 -38.19074 -37.53470 -36.54547 -35.86116 -33.35839 -33.04174 -32.76575 -29.16347 -28.34337 -27.53937 -26.37470 -25.19662 -23.89183 -22.60754 -21.66849 -21.06393 -19.92562 -19.75198 -18.23605 -17.89562 -17.52584 -17.23072 -17.06600 -16.57484 -16.33695 -15.93800 -15.76432 -15.47848 -15.10316 -15.00671 -14.82336 -14.58831 -14.22181 -14.11648 -13.87472 -13.57826 -13.50123 -13.41310 -13.25737 -13.07150 -12.96727 -12.81274 -12.65489 -12.57406 -12.46066 -12.42325 -12.12860 -11.89697 -11.70099 -11.52249 -10.95116 -10.38381 -10.03480 -9.82517 -9.65246 -9.34899 -9.33562 -8.47968 -5.97087 -0.14989 0.56084 0.95204 1.11126 1.37224 1.40984 1.54125 1.90856 2.02883 2.19765 2.28689 2.93070 3.18998 3.50958 3.63410 3.71268 3.97547 4.08575 4.16032 4.23691 4.30217 4.36367 4.37293 4.45682 4.51856 4.52860 4.55083 4.58342 4.61869 4.70659 4.79141 4.89859 4.95160 5.01645 5.11070 5.15458 5.19947 5.32194 5.39482 5.55017 5.87847 6.09579 6.31980 6.39863 6.58496 7.09880 7.10798 7.54023 8.09477 8.69386 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.001621 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.245143 B =17264.095993 C =17822.963394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.177 4.177 3 S 0.211 5.789 4 C -0.228 4.228 5 C -0.113 4.113 6 C -0.190 4.190 7 C 0.572 3.428 8 O -0.578 6.578 9 N -0.608 5.608 10 C 0.069 3.931 11 C 0.121 3.879 12 C -0.119 4.119 13 C 0.067 3.933 14 N -0.690 5.690 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.995 3.005 24 H -0.269 1.269 25 H -0.270 1.270 26 H -0.274 1.274 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.201 0.799 31 H 0.173 0.827 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.344 0.656 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.304 19.651 12.925 33.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.297 4.297 3 S 0.477 5.523 4 C -0.362 4.362 5 C -0.142 4.142 6 C -0.207 4.207 7 C 0.360 3.640 8 O -0.459 6.459 9 N -0.339 5.339 10 C -0.072 4.072 11 C -0.003 4.003 12 C -0.158 4.158 13 C -0.062 4.062 14 N -0.323 5.323 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.818 3.182 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.199 1.199 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.218 0.782 31 H 0.190 0.810 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.163 0.837 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.231 0.769 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.831 21.782 13.185 34.199 hybrid contribution -0.004 -2.726 -0.767 2.832 sum 22.827 19.056 12.418 32.225 Atomic orbital electron populations 1.20376 0.87622 1.03505 1.02958 1.24652 1.01911 0.98474 1.04644 1.82969 0.94667 1.05560 1.69126 1.25838 1.03338 0.96710 1.10363 1.21482 0.93216 0.97481 1.01985 1.20213 0.94716 0.92572 1.13212 1.18120 0.82232 0.84863 0.78812 1.90772 1.28899 1.82625 1.43577 1.47817 1.27286 1.11724 1.47080 1.22289 0.84734 1.03243 0.96980 1.21455 0.96912 0.83402 0.98487 1.21761 0.98130 0.96664 0.99270 1.21900 0.93583 0.96640 0.94098 1.60027 1.36207 1.27110 1.08944 1.21530 0.96499 0.91645 0.96992 1.20908 0.85261 0.83401 0.88098 1.90486 1.70569 1.34718 1.55434 1.41928 1.37109 1.12434 1.29445 1.19676 1.18830 0.99008 1.09071 0.90392 1.26061 0.99784 0.94156 1.01275 1.69668 1.42984 1.02570 1.40776 0.84909 0.77543 0.78123 0.77629 1.19424 1.19452 1.19930 0.89254 0.91697 0.90980 0.78243 0.81029 0.90035 0.89282 0.90450 0.87038 0.91221 0.94085 0.91057 0.92691 0.91030 0.83692 0.91040 0.88095 0.76898 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.34 71.24 0.67 -1.08 16 2 C -0.18 -3.36 6.33 25.17 0.16 -3.20 16 3 S 0.21 2.49 22.95 -56.49 -1.30 1.19 16 4 C -0.23 -2.04 11.12 66.64 0.74 -1.30 16 5 C -0.11 -1.35 8.12 22.67 0.18 -1.17 16 6 C -0.19 -3.73 5.17 -19.87 -0.10 -3.83 16 7 C 0.57 14.08 7.23 86.59 0.63 14.71 16 8 O -0.58 -19.09 15.31 -4.15 -0.06 -19.16 16 9 N -0.61 -11.19 2.87 -850.93 -2.44 -13.64 16 10 C 0.07 0.68 9.01 127.77 1.15 1.83 16 11 C 0.12 2.22 5.42 86.38 0.47 2.69 16 12 C -0.12 -2.70 5.80 30.60 0.18 -2.52 16 13 C 0.07 1.62 5.69 86.30 0.49 2.11 16 14 N -0.69 -23.12 6.13 -517.93 -3.17 -26.30 16 15 C 0.07 2.34 6.17 85.56 0.53 2.87 16 16 C 0.44 21.50 7.82 87.66 0.69 22.19 16 17 O -0.63 -36.00 15.78 -3.08 -0.05 -36.04 16 18 N -0.57 -30.12 5.29 -306.99 -1.62 -31.75 16 19 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 20 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -50.16 13.05 21.66 0.28 -49.87 16 23 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H 0.09 1.32 8.11 -2.39 -0.02 1.30 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.07 1.72 7.56 -2.39 -0.02 1.70 16 30 H 0.20 0.46 8.06 -2.91 -0.02 0.44 16 31 H 0.17 1.18 6.07 -2.91 -0.02 1.17 16 32 H 0.08 0.42 7.05 -2.39 -0.02 0.41 16 33 H 0.09 0.64 8.03 -2.39 -0.02 0.63 16 34 H 0.08 0.76 6.00 -2.39 -0.01 0.75 16 35 H 0.11 1.31 8.07 -2.39 -0.02 1.29 16 36 H 0.07 1.57 7.36 -2.39 -0.02 1.55 16 37 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.34 11.82 8.43 -89.69 -0.76 11.07 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 45 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -78.56 389.74 0.25 -78.30 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.46 Total: 37.37 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 7.05 Total: 14.33 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -6.96 Total: -121.55 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -0.11 Total: -55.20 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.30 Total: 1.19 kcal Total: -78.56 0.25 -78.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723014574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.918 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds