Wall clock time and date at job start Tue Mar 31 2020 22:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 120.00149 * 2 1 4 4 H 1.48506 * 109.46904 * 239.99820 * 3 2 1 5 5 H 1.48500 * 109.47136 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47245 * 119.99450 * 3 2 1 7 7 C 1.38808 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 162.68677 * 7 2 1 9 9 N 1.36942 * 119.99996 * 342.69298 * 7 2 1 10 10 C 1.46929 * 120.62750 * 152.11790 * 9 7 2 11 11 C 1.53196 * 108.77196 * 126.37257 * 10 9 7 12 12 C 1.53044 * 109.31422 * 54.63349 * 11 10 9 13 13 C 1.53079 * 109.65461 * 298.69911 * 12 11 10 14 14 C 1.53003 * 109.61828 * 181.16811 * 13 12 11 15 15 O 1.42902 * 109.46995 * 176.19639 * 14 13 12 16 16 N 1.46496 * 109.39048 * 301.27553 * 13 12 11 17 17 C 1.34775 * 120.00139 * 297.16190 * 16 13 12 18 18 O 1.21274 * 119.99817 * 4.72789 * 17 16 13 19 19 C 1.50696 * 119.99906 * 184.72379 * 17 16 13 20 20 C 1.53000 * 109.47306 * 180.02562 * 19 17 16 21 21 C 1.50703 * 109.47541 * 179.97438 * 20 19 17 22 22 N 1.29019 * 124.91134 * 90.00001 * 21 20 19 23 23 C 1.31782 * 117.12096 * 179.97438 * 22 21 20 24 24 C 1.33642 * 114.50491 * 0.02562 * 23 22 21 25 25 S 1.70978 * 124.91494 * 269.70076 * 21 20 19 26 26 C 1.46923 * 120.62969 * 332.10130 * 9 7 2 27 27 H 0.97001 * 119.99873 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.58364 * 246.15678 * 10 9 7 29 29 H 1.08999 * 109.58939 * 6.44386 * 10 9 7 30 30 H 1.08991 * 109.49707 * 174.58258 * 11 10 9 31 31 H 1.08998 * 109.49616 * 294.65344 * 11 10 9 32 32 H 1.09000 * 109.45855 * 58.65320 * 12 11 10 33 33 H 1.08994 * 109.45991 * 178.62896 * 12 11 10 34 34 H 1.09000 * 109.47317 * 296.19664 * 14 13 12 35 35 H 1.09001 * 109.47327 * 56.19774 * 14 13 12 36 36 H 0.96696 * 114.00240 * 180.02562 * 15 14 13 37 37 H 0.97003 * 119.99792 * 117.16498 * 16 13 12 38 38 H 1.09002 * 109.47246 * 300.00097 * 19 17 16 39 39 H 1.09005 * 109.47435 * 59.99935 * 19 17 16 40 40 H 1.08997 * 109.47491 * 300.00565 * 20 19 17 41 41 H 1.09005 * 109.46727 * 59.99988 * 20 19 17 42 42 H 1.08006 * 122.75467 * 180.02562 * 23 22 21 43 43 H 1.07995 * 126.04259 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.58391 * 353.41014 * 26 9 7 45 45 H 1.08997 * 109.59006 * 113.70198 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0535 -1.2235 -0.2778 9 7 1.3720 -2.3611 0.3539 10 6 1.8168 -3.6543 -0.1834 11 6 2.0742 -4.6112 0.9848 12 6 0.8207 -4.6914 1.8592 13 6 0.5016 -3.3073 2.4299 14 6 -0.7347 -3.3940 3.3271 15 8 -0.9775 -2.1204 3.9280 16 7 1.6431 -2.8295 3.2140 17 6 2.0332 -3.5020 4.3150 18 8 1.4950 -4.5484 4.6087 19 6 3.1379 -2.9537 5.1809 20 6 3.3838 -3.9026 6.3557 21 6 4.4890 -3.3546 7.2213 22 7 4.3175 -2.5577 8.2214 23 6 5.3954 -2.1726 8.8744 24 6 6.5400 -2.6721 8.3983 25 16 6.1510 -3.7048 7.0246 26 6 0.2299 -2.3349 1.2777 27 1 -0.4850 0.8401 -0.0004 28 1 1.0424 -4.0670 -0.8300 29 1 2.7347 -3.5164 -0.7547 30 1 2.3117 -5.6021 0.5979 31 1 2.9101 -4.2428 1.5795 32 1 -0.0202 -5.0365 1.2576 33 1 0.9929 -5.3904 2.6776 34 1 -1.5983 -3.6840 2.7287 35 1 -0.5666 -4.1373 4.1065 36 1 -1.7481 -2.1014 4.5118 37 1 2.1183 -2.0292 2.9408 38 1 4.0502 -2.8621 4.5913 39 1 2.8501 -1.9730 5.5596 40 1 2.4717 -3.9947 6.9454 41 1 3.6719 -4.8831 5.9766 42 1 5.3572 -1.5078 9.7247 43 1 7.5283 -2.4801 8.7891 44 1 0.1023 -1.3270 1.6726 45 1 -0.6743 -2.6378 0.7496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724644890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:45 Heat of formation + Delta-G solvation = -21.924005 kcal Electronic energy + Delta-G solvation = -28305.258254 eV Core-core repulsion = 24450.150643 eV Total energy + Delta-G solvation = -3855.107611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.08786 -39.70125 -37.53734 -35.87649 -33.96202 -33.60700 -32.53041 -30.53265 -29.89379 -29.36127 -26.14406 -25.43853 -25.06259 -23.41420 -22.22392 -20.89640 -20.09968 -19.84693 -18.63512 -18.13137 -17.02979 -16.73396 -16.61728 -15.75446 -15.40587 -15.21582 -14.87383 -14.47189 -14.19280 -14.05075 -13.92474 -13.59762 -13.34135 -13.13446 -12.83952 -12.75707 -12.36187 -12.26154 -12.08896 -11.87420 -11.69021 -11.42638 -11.14399 -11.13749 -10.96563 -10.72741 -10.46998 -10.23662 -9.98033 -9.83567 -9.78288 -9.61391 -9.60670 -9.55191 -9.11916 -8.88563 -8.51810 -8.33804 -6.71942 -5.83080 -3.26368 0.51450 1.17952 1.57299 2.65412 3.09167 3.35477 3.42201 3.42864 3.64940 4.08730 4.45446 4.68995 4.80208 4.95244 5.00210 5.08990 5.25388 5.29120 5.34016 5.43213 5.54902 5.61697 5.73156 5.81122 5.83571 5.85371 5.95496 5.97254 6.04191 6.12761 6.31926 6.40009 6.50503 6.52424 6.67082 6.82024 6.97854 7.08599 7.32992 7.57195 7.62748 7.76618 8.08444 8.21004 8.40794 8.76466 9.15820 9.79437 10.36690 11.24840 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.003504 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.960920 B = 7989.314465 C = 8948.152962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.008 3.992 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.142 3.858 11 C -0.127 4.127 12 C -0.120 4.120 13 C 0.157 3.843 14 C 0.069 3.931 15 O -0.560 6.560 16 N -0.684 5.684 17 C 0.517 3.483 18 O -0.559 6.559 19 C -0.136 4.136 20 C -0.026 4.026 21 C 0.060 3.940 22 N -0.475 5.475 23 C 0.040 3.960 24 C -0.267 4.267 25 S 0.120 5.880 26 C 0.174 3.826 27 H 0.256 0.744 28 H 0.017 0.983 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.367 0.633 37 H 0.409 0.591 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.103 0.897 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.003 -7.753 13.536 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.192 4.192 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.166 4.166 12 C -0.158 4.158 13 C 0.069 3.931 14 C -0.011 4.011 15 O -0.363 6.363 16 N -0.333 5.333 17 C 0.303 3.697 18 O -0.440 6.440 19 C -0.178 4.178 20 C -0.067 4.067 21 C -0.218 4.218 22 N -0.190 5.190 23 C -0.111 4.111 24 C -0.406 4.406 25 S 0.373 5.627 26 C 0.048 3.952 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.212 0.788 37 H 0.244 0.756 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.192 0.808 43 H 0.193 0.807 44 H 0.121 0.879 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.078 -8.593 12.784 17.394 hybrid contribution 0.182 1.813 0.939 2.050 sum 8.260 -6.780 13.724 17.393 Atomic orbital electron populations 1.70001 1.05249 1.25799 1.52911 1.25043 0.95213 0.98374 1.00561 0.86414 0.78954 0.83533 0.78101 1.20943 1.21643 1.20978 1.19116 0.92707 0.84715 1.42526 0.91631 1.44042 1.36022 1.01584 1.49616 1.20971 0.97531 0.86972 0.92948 1.21902 0.97439 0.98802 0.98464 1.21749 0.98453 0.96338 0.99294 1.21214 0.83538 0.96323 0.92035 1.22568 0.96759 0.85508 0.96224 1.86571 1.51542 1.32518 1.65678 1.45847 1.32336 1.29741 1.25407 1.20253 0.83746 0.84391 0.81330 1.90577 1.57574 1.23272 1.72549 1.21629 0.99212 1.00860 0.96093 1.19989 0.94920 0.98160 0.93630 1.27246 0.97922 0.98833 0.97800 1.66308 1.32856 1.12700 1.07107 1.21840 0.86187 1.01708 1.01394 1.27083 1.04276 1.06662 1.02621 1.84121 1.04507 1.44730 1.29302 1.21004 0.89051 0.98706 0.86444 0.93438 0.96552 0.92895 0.93200 0.92481 0.92254 0.90978 0.93839 0.92260 0.78753 0.75565 0.89012 0.88386 0.87967 0.88846 0.80827 0.80686 0.87873 0.95246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.17 11.20 55.49 0.62 -24.55 16 2 C 0.01 0.20 4.91 -17.43 -0.09 0.12 16 3 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.76 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -13.91 2.87 -172.31 -0.49 -14.40 16 10 C 0.14 2.89 6.52 -3.71 -0.02 2.86 16 11 C -0.13 -2.22 5.93 -26.61 -0.16 -2.38 16 12 C -0.12 -2.11 4.52 -26.67 -0.12 -2.23 16 13 C 0.16 2.95 0.46 -131.68 -0.06 2.89 16 14 C 0.07 1.19 5.63 37.16 0.21 1.40 16 15 O -0.56 -9.79 13.05 -35.23 -0.46 -10.25 16 16 N -0.68 -12.18 3.99 -47.48 -0.19 -12.37 16 17 C 0.52 8.35 7.24 -10.99 -0.08 8.27 16 18 O -0.56 -9.96 12.28 5.56 0.07 -9.89 16 19 C -0.14 -1.77 5.68 -27.89 -0.16 -1.93 16 20 C -0.03 -0.31 5.09 -27.88 -0.14 -0.45 16 21 C 0.06 0.71 6.64 -13.46 -0.09 0.62 16 22 N -0.48 -6.09 10.54 -11.86 -0.13 -6.22 16 23 C 0.04 0.41 11.35 -19.18 -0.22 0.19 16 24 C -0.27 -2.35 11.37 29.12 0.33 -2.02 16 25 S 0.12 1.16 23.18 -107.50 -2.49 -1.34 16 26 C 0.17 3.98 3.84 -3.71 -0.01 3.96 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.03 7.54 -51.93 -0.39 0.63 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.29 6.25 -51.93 -0.32 0.96 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.03 6.26 -51.93 -0.33 0.71 16 36 H 0.37 4.63 9.12 45.56 0.42 5.04 16 37 H 0.41 7.71 8.43 -40.82 -0.34 7.36 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 41 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.10 2.69 5.86 -51.93 -0.30 2.39 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -30.95 373.67 -9.10 -40.06 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.88 Total: 12.96 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.75 Total: 4.41 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.19 Total: -57.54 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.39 Total: -20.14 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.49 Total: -1.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.95 -9.10 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724644890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.134 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds