Wall clock time and date at job start Tue Mar 31 2020 22:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48502 * 109.46908 * 270.00040 * 3 2 1 5 5 H 1.48503 * 109.47074 * 30.00014 * 3 2 1 6 6 H 1.48502 * 109.47352 * 149.99773 * 3 2 1 7 7 C 1.38806 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99644 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99777 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47163 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99704 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00175 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00102 * 174.74345 * 13 11 10 15 15 C 1.53003 * 110.43252 * 301.18949 * 14 13 11 16 16 N 1.46898 * 109.47160 * 305.45203 * 15 14 13 17 17 C 1.46897 * 110.99834 * 175.48310 * 16 15 14 18 18 C 1.50703 * 109.47159 * 179.97438 * 17 16 15 19 19 C 1.41378 * 126.79652 * 94.71052 * 18 17 16 20 20 C 1.35453 * 103.98177 * 179.89155 * 19 18 17 21 21 O 1.34038 * 106.44850 * 0.36965 * 20 19 18 22 22 N 1.20925 * 111.56485 * 359.74720 * 21 20 19 23 23 C 1.54885 * 110.48700 * 178.50552 * 14 13 11 24 24 C 1.54892 * 102.74947 * 279.26489 * 23 14 13 25 25 C 1.54263 * 104.19349 * 322.05456 * 24 23 14 26 26 C 1.53875 * 106.60084 * 23.61283 * 25 24 23 27 27 H 0.97005 * 119.99603 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47320 * 300.00288 * 10 9 7 29 29 H 1.08998 * 109.47213 * 60.00211 * 10 9 7 30 30 H 0.96999 * 119.99288 * 354.73965 * 13 11 10 31 31 H 1.08995 * 109.46898 * 65.45810 * 15 14 13 32 32 H 1.09005 * 109.46725 * 185.45032 * 15 14 13 33 33 H 1.00891 * 110.99941 * 51.52929 * 16 15 14 34 34 H 1.08994 * 109.47483 * 300.00458 * 17 16 15 35 35 H 1.09001 * 109.47141 * 59.99978 * 17 16 15 36 36 H 1.08005 * 128.01268 * 0.02632 * 19 18 17 37 37 H 1.08001 * 126.77544 * 180.10034 * 20 19 18 38 38 H 1.09000 * 110.75478 * 37.57891 * 23 14 13 39 39 H 1.08998 * 110.75994 * 160.94724 * 23 14 13 40 40 H 1.09000 * 110.48646 * 203.38030 * 24 23 14 41 41 H 1.09000 * 110.48691 * 80.73712 * 24 23 14 42 42 H 1.08991 * 110.03747 * 264.32540 * 25 24 23 43 43 H 1.09001 * 110.02834 * 142.89353 * 25 24 23 44 44 H 1.08993 * 110.03615 * 240.71320 * 26 25 24 45 45 H 1.08998 * 110.03492 * 119.27659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9873 -5.3028 0.0018 12 8 0.7910 -5.5023 0.0019 13 7 2.8440 -6.3432 0.0020 14 6 2.3344 -7.7117 0.1186 15 6 1.5413 -7.8776 1.4165 16 7 2.3741 -7.4679 2.5550 17 6 1.6101 -7.5119 3.8089 18 6 2.4955 -7.0867 4.9519 19 6 2.6071 -5.7878 5.4989 20 6 3.5179 -5.9279 6.4916 21 8 3.8899 -7.2156 6.4865 22 7 3.3133 -7.8414 5.6273 23 6 3.4991 -8.7309 0.0577 24 6 3.7729 -8.8466 -1.4625 25 6 2.3715 -8.7884 -2.1047 26 6 1.4569 -8.0667 -1.0996 27 1 -0.4850 0.8401 0.0004 28 1 3.1238 -3.7318 -0.8891 29 1 3.1251 -3.7310 0.8908 30 1 3.7980 -6.1858 -0.0752 31 1 0.6471 -7.2555 1.3778 32 1 1.2524 -8.9220 1.5347 33 1 2.7680 -6.5514 2.4036 34 1 0.7574 -6.8367 3.7388 35 1 1.2556 -8.5279 3.9829 36 1 2.0851 -4.8918 5.1968 37 1 3.8771 -5.1538 7.1535 38 1 4.3756 -8.3475 0.5800 39 1 3.1928 -9.6926 0.4693 40 1 4.2583 -9.7953 -1.6915 41 1 4.3844 -8.0117 -1.8046 42 1 2.0024 -9.7974 -2.2878 43 1 2.4124 -8.2299 -3.0399 44 1 0.6439 -8.7256 -0.7947 45 1 1.0539 -7.1581 -1.5469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732226040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:16 Heat of formation + Delta-G solvation = 18.727095 kcal Electronic energy + Delta-G solvation = -27324.058413 eV Core-core repulsion = 23470.713566 eV Total energy + Delta-G solvation = -3853.344847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.01398 -40.31991 -37.62406 -36.34775 -33.85574 -33.06478 -32.47099 -31.74290 -30.10877 -28.83739 -28.33078 -26.23477 -25.50564 -23.41422 -23.05784 -21.29790 -20.98369 -20.58989 -19.24070 -17.89673 -17.87859 -17.62377 -16.53840 -16.28652 -15.98801 -15.17243 -14.90509 -14.85565 -14.82702 -14.54450 -14.47532 -14.01575 -13.53165 -13.40767 -13.27033 -13.11375 -12.64300 -12.34765 -12.25557 -11.99651 -11.52253 -11.45390 -11.30724 -11.26112 -11.14228 -11.09443 -11.06362 -10.88035 -10.78402 -10.52119 -10.29235 -9.85520 -9.74286 -9.32047 -9.11176 -8.92568 -8.43939 -8.28537 -6.54646 -6.26271 -3.96786 1.40911 2.09682 2.99833 3.03269 3.16745 3.18795 3.24887 3.28872 3.68370 3.94823 4.16010 4.16674 4.43099 4.52989 4.62266 4.73839 5.05353 5.06369 5.09233 5.11844 5.20407 5.25278 5.35937 5.41129 5.48664 5.52299 5.56601 5.60877 5.63192 5.67001 5.77109 5.82821 5.84214 5.89823 5.92087 5.98332 6.08738 6.10234 6.17664 6.34890 6.75747 6.82125 7.21387 7.55403 7.73335 8.17641 8.30829 8.59001 9.19479 10.81057 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007646 B = 0.003769 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.190282 B = 7428.073913 C =10276.550597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.917 3.083 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.155 4.155 11 C 0.531 3.469 12 O -0.513 6.513 13 N -0.726 5.726 14 C 0.180 3.820 15 C 0.051 3.949 16 N -0.677 5.677 17 C 0.135 3.865 18 C 0.021 3.979 19 C -0.227 4.227 20 C -0.063 4.063 21 O 0.097 5.903 22 N -0.351 5.351 23 C -0.111 4.111 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.128 4.128 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.398 0.602 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.345 0.655 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.174 0.826 37 H 0.216 0.784 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 -16.902 5.880 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.306 4.306 11 C 0.317 3.683 12 O -0.388 6.388 13 N -0.381 5.381 14 C 0.093 3.907 15 C -0.079 4.079 16 N -0.310 5.310 17 C 0.006 3.994 18 C -0.139 4.139 19 C -0.249 4.249 20 C -0.144 4.144 21 O 0.029 5.971 22 N -0.054 5.054 23 C -0.149 4.149 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.167 4.167 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.232 0.768 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.191 0.809 37 H 0.233 0.767 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.558 -19.064 5.928 21.014 hybrid contribution 1.521 3.197 -0.275 3.551 sum 8.079 -15.867 5.653 18.681 Atomic orbital electron populations 1.70015 1.05950 1.27465 1.46872 1.24978 0.95000 0.98992 0.94497 0.86191 0.79432 0.81616 0.78415 1.20242 1.20736 1.19687 1.22867 0.94893 0.91705 1.58976 0.90994 1.85355 1.04836 0.96264 1.96718 1.23561 1.06570 0.95660 1.04801 1.20300 0.86644 0.86179 0.75150 1.90677 1.15274 1.85536 1.47271 1.46103 1.10152 1.05085 1.76723 1.21056 0.94132 0.81808 0.93656 1.22358 0.95623 1.01229 0.88673 1.60494 1.35234 1.34401 1.00886 1.20160 0.92117 1.01862 0.85281 1.23500 0.99467 0.90882 1.00032 1.22911 1.03382 0.99397 0.99212 1.26014 0.99071 0.87607 1.01749 1.84843 1.51084 1.18889 1.42277 1.73841 1.08971 1.20723 1.01891 1.22643 0.97557 0.98708 0.95960 1.22412 0.97113 1.01563 0.95387 1.22119 0.95041 1.00204 0.98668 1.22489 0.97722 1.01497 0.94992 0.92181 0.89400 0.89437 0.76760 0.92278 0.90354 0.83682 0.92414 0.89434 0.80893 0.76729 0.90699 0.90071 0.91697 0.91691 0.92004 0.91968 0.91211 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.65 13.22 55.49 0.73 -24.91 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.89 9.50 30.94 0.29 -14.59 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.16 -2.96 6.16 36.01 0.22 -2.74 16 11 C 0.53 9.03 6.93 -10.98 -0.08 8.96 16 12 O -0.51 -10.45 12.76 5.56 0.07 -10.38 16 13 N -0.73 -9.05 4.19 -46.07 -0.19 -9.24 16 14 C 0.18 2.05 0.53 -130.16 -0.07 1.98 16 15 C 0.05 0.62 4.28 -3.82 -0.02 0.60 16 16 N -0.68 -8.18 6.37 -115.06 -0.73 -8.91 16 17 C 0.14 1.61 6.27 -4.98 -0.03 1.58 16 18 C 0.02 0.25 6.84 -82.10 -0.56 -0.31 16 19 C -0.23 -2.43 11.12 -39.38 -0.44 -2.87 16 20 C -0.06 -0.55 12.30 29.74 0.37 -0.19 16 21 O 0.10 1.09 11.20 17.18 0.19 1.28 16 22 N -0.35 -4.63 12.07 33.42 0.40 -4.23 16 23 C -0.11 -1.03 5.70 -24.74 -0.14 -1.17 16 24 C -0.13 -1.10 6.79 -25.07 -0.17 -1.27 16 25 C -0.12 -1.20 6.80 -25.61 -0.17 -1.37 16 26 C -0.13 -1.53 5.67 -25.61 -0.15 -1.67 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 29 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.40 4.13 8.49 -40.82 -0.35 3.78 16 31 H 0.06 0.88 6.50 -51.93 -0.34 0.55 16 32 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.34 4.50 7.64 -39.30 -0.30 4.20 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.22 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.08 0.73 8.01 -51.93 -0.42 0.32 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 45 H 0.08 1.25 6.47 -51.93 -0.34 0.91 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.23 384.10 -8.76 -41.99 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.75 Total: 7.45 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.04 Total: -11.08 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.21 Total: -47.29 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.26 Total: -9.10 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.23 -8.76 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732226040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.722 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds