Wall clock time and date at job start Tue Mar 31 2020 22:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48502 * 109.46908 * 270.00040 * 3 2 1 5 5 H 1.48503 * 109.47074 * 30.00014 * 3 2 1 6 6 H 1.48502 * 109.47352 * 149.99773 * 3 2 1 7 7 C 1.38806 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99644 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99777 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47163 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99704 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00175 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00102 * 174.74345 * 13 11 10 15 15 C 1.53003 * 110.43252 * 301.18949 * 14 13 11 16 16 N 1.46898 * 109.47160 * 305.45203 * 15 14 13 17 17 C 1.46897 * 110.99834 * 175.48310 * 16 15 14 18 18 C 1.50703 * 109.47159 * 179.97438 * 17 16 15 19 19 C 1.41378 * 126.79652 * 94.71052 * 18 17 16 20 20 C 1.35453 * 103.98177 * 179.89155 * 19 18 17 21 21 O 1.34038 * 106.44850 * 0.36965 * 20 19 18 22 22 N 1.20925 * 111.56485 * 359.74720 * 21 20 19 23 23 C 1.54885 * 110.48700 * 178.50552 * 14 13 11 24 24 C 1.54892 * 102.74947 * 279.26489 * 23 14 13 25 25 C 1.54263 * 104.19349 * 322.05456 * 24 23 14 26 26 C 1.53875 * 106.60084 * 23.61283 * 25 24 23 27 27 H 0.97005 * 119.99603 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47320 * 300.00288 * 10 9 7 29 29 H 1.08998 * 109.47213 * 60.00211 * 10 9 7 30 30 H 0.96999 * 119.99288 * 354.73965 * 13 11 10 31 31 H 1.08995 * 109.46898 * 65.45810 * 15 14 13 32 32 H 1.09005 * 109.46725 * 185.45032 * 15 14 13 33 33 H 1.00891 * 110.99941 * 51.52929 * 16 15 14 34 34 H 1.08994 * 109.47483 * 300.00458 * 17 16 15 35 35 H 1.09001 * 109.47141 * 59.99978 * 17 16 15 36 36 H 1.08005 * 128.01268 * 0.02632 * 19 18 17 37 37 H 1.08001 * 126.77544 * 180.10034 * 20 19 18 38 38 H 1.09000 * 110.75478 * 37.57891 * 23 14 13 39 39 H 1.08998 * 110.75994 * 160.94724 * 23 14 13 40 40 H 1.09000 * 110.48646 * 203.38030 * 24 23 14 41 41 H 1.09000 * 110.48691 * 80.73712 * 24 23 14 42 42 H 1.08991 * 110.03747 * 264.32540 * 25 24 23 43 43 H 1.09001 * 110.02834 * 142.89353 * 25 24 23 44 44 H 1.08993 * 110.03615 * 240.71320 * 26 25 24 45 45 H 1.08998 * 110.03492 * 119.27659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9873 -5.3028 0.0018 12 8 0.7910 -5.5023 0.0019 13 7 2.8440 -6.3432 0.0020 14 6 2.3344 -7.7117 0.1186 15 6 1.5413 -7.8776 1.4165 16 7 2.3741 -7.4679 2.5550 17 6 1.6101 -7.5119 3.8089 18 6 2.4955 -7.0867 4.9519 19 6 2.6071 -5.7878 5.4989 20 6 3.5179 -5.9279 6.4916 21 8 3.8899 -7.2156 6.4865 22 7 3.3133 -7.8414 5.6273 23 6 3.4991 -8.7309 0.0577 24 6 3.7729 -8.8466 -1.4625 25 6 2.3715 -8.7884 -2.1047 26 6 1.4569 -8.0667 -1.0996 27 1 -0.4850 0.8401 0.0004 28 1 3.1238 -3.7318 -0.8891 29 1 3.1251 -3.7310 0.8908 30 1 3.7980 -6.1858 -0.0752 31 1 0.6471 -7.2555 1.3778 32 1 1.2524 -8.9220 1.5347 33 1 2.7680 -6.5514 2.4036 34 1 0.7574 -6.8367 3.7388 35 1 1.2556 -8.5279 3.9829 36 1 2.0851 -4.8918 5.1968 37 1 3.8771 -5.1538 7.1535 38 1 4.3756 -8.3475 0.5800 39 1 3.1928 -9.6926 0.4693 40 1 4.2583 -9.7953 -1.6915 41 1 4.3844 -8.0117 -1.8046 42 1 2.0024 -9.7974 -2.2878 43 1 2.4124 -8.2299 -3.0399 44 1 0.6439 -8.7256 -0.7947 45 1 1.0539 -7.1581 -1.5469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732226040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:15 Heat of formation + Delta-G solvation = -4.394757 kcal Electronic energy + Delta-G solvation = -27325.061052 eV Core-core repulsion = 23470.713566 eV Total energy + Delta-G solvation = -3854.347486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.89031 -41.46543 -38.82563 -37.27368 -34.80306 -34.58455 -34.20972 -32.59291 -31.31592 -29.69320 -29.58056 -27.66635 -27.13129 -24.34033 -23.93333 -22.39499 -21.98450 -21.40148 -20.35460 -19.80264 -18.74571 -18.51746 -17.83977 -17.36968 -17.08296 -16.87844 -16.26538 -16.19204 -15.83945 -15.63122 -15.51844 -15.34256 -14.78458 -14.51652 -14.35423 -14.14224 -14.11908 -13.59434 -13.24804 -13.16064 -13.03191 -12.90473 -12.64570 -12.50204 -12.34871 -12.23346 -12.10246 -11.94245 -11.76878 -11.70921 -11.30849 -11.18059 -11.14525 -10.71584 -10.56178 -10.26357 -10.08130 -9.49118 -8.64953 -8.35026 -6.11880 0.61929 1.22172 1.27618 1.41436 1.47152 1.57296 1.64684 2.25745 2.31633 2.45009 2.99475 3.02751 3.23877 3.32314 3.57619 3.67836 3.74891 3.89223 4.00838 4.18990 4.24796 4.29657 4.36853 4.40168 4.50199 4.51462 4.59289 4.63168 4.66097 4.67660 4.79194 4.83455 4.89315 4.93019 5.10831 5.12278 5.12836 5.27278 5.35073 5.41779 5.50578 5.67969 5.80491 6.16485 6.19492 6.57850 7.06952 7.29935 7.34600 8.73889 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007646 B = 0.003769 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.190282 B = 7428.073913 C =10276.550597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.080 0.920 9 S -0.141 6.141 10 C -0.132 4.132 11 C 0.536 3.464 12 O -0.551 6.551 13 N -0.702 5.702 14 C 0.179 3.821 15 C 0.056 3.944 16 N -0.669 5.669 17 C 0.137 3.863 18 C 0.008 3.992 19 C -0.251 4.251 20 C -0.038 4.038 21 O 0.093 5.907 22 N -0.378 5.378 23 C -0.100 4.100 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.129 4.129 27 H 0.271 0.729 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.413 0.587 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.338 0.662 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.176 0.824 37 H 0.261 0.739 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.086 -17.393 6.396 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.098 0.902 9 S 0.086 5.914 10 C -0.283 4.283 11 C 0.322 3.678 12 O -0.428 6.428 13 N -0.356 5.356 14 C 0.092 3.908 15 C -0.074 4.074 16 N -0.301 5.301 17 C 0.007 3.993 18 C -0.151 4.151 19 C -0.273 4.273 20 C -0.119 4.119 21 O 0.026 5.974 22 N -0.082 5.082 23 C -0.138 4.138 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.168 4.168 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.249 0.751 31 H 0.044 0.956 32 H 0.112 0.888 33 H 0.156 0.844 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.194 0.806 37 H 0.277 0.723 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.543 -19.597 6.443 22.729 hybrid contribution 0.610 3.256 -0.398 3.336 sum 10.153 -16.341 6.046 20.166 Atomic orbital electron populations 1.70176 1.07920 1.28545 1.48101 1.26059 0.95880 1.03127 0.93758 0.85015 0.78310 0.76307 0.78758 1.19482 1.20287 1.18165 1.23203 0.95284 0.92248 1.58758 0.90171 1.85506 1.10114 0.98812 1.97004 1.23400 1.03636 0.94978 1.06316 1.19954 0.86391 0.86258 0.75215 1.90681 1.16963 1.85849 1.49312 1.45858 1.10324 1.04699 1.74767 1.21216 0.95190 0.81319 0.93044 1.22320 0.94516 1.01375 0.89180 1.60551 1.34932 1.33764 1.00858 1.20126 0.91912 1.01893 0.85350 1.23623 0.99605 0.91704 1.00193 1.23077 1.04806 0.99022 1.00437 1.26781 0.97124 0.87131 1.00825 1.84804 1.50851 1.19933 1.41764 1.73832 1.09901 1.21656 1.02815 1.22604 0.96409 0.98063 0.96715 1.22404 0.96281 1.02749 0.94442 1.22105 0.95392 1.00528 0.97669 1.22459 0.98465 1.00210 0.95643 0.92039 0.87921 0.87630 0.75061 0.95599 0.88814 0.84429 0.93342 0.88981 0.80648 0.72322 0.90052 0.89105 0.89731 0.91539 0.90494 0.92621 0.90944 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.04 13.22 21.65 0.29 -54.76 16 2 C 0.02 0.93 5.49 84.86 0.47 1.40 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 7 C -0.55 -30.58 9.50 67.96 0.65 -29.93 16 8 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 9 S -0.14 -7.59 20.57 -56.49 -1.16 -8.76 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.54 18.41 6.93 87.66 0.61 19.01 16 12 O -0.55 -23.41 12.76 -3.04 -0.04 -23.45 16 13 N -0.70 -16.85 4.19 -418.07 -1.75 -18.61 16 14 C 0.18 3.88 0.53 4.68 0.00 3.88 16 15 C 0.06 1.35 4.28 86.30 0.37 1.72 16 16 N -0.67 -15.89 6.37 -517.94 -3.30 -19.18 16 17 C 0.14 3.29 6.27 85.56 0.54 3.83 16 18 C 0.01 0.18 6.84 43.58 0.30 0.48 16 19 C -0.25 -5.17 11.12 22.40 0.25 -4.92 16 20 C -0.04 -0.58 12.30 67.18 0.83 0.25 16 21 O 0.09 1.96 11.20 71.65 0.80 2.76 16 22 N -0.38 -9.68 12.07 -49.56 -0.60 -10.28 16 23 C -0.10 -1.58 5.70 31.88 0.18 -1.40 16 24 C -0.12 -1.74 6.79 31.67 0.22 -1.52 16 25 C -0.12 -2.12 6.80 31.32 0.21 -1.91 16 26 C -0.13 -3.04 5.67 31.32 0.18 -2.87 16 27 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 28 H 0.10 3.60 8.14 -2.40 -0.02 3.58 16 29 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 30 H 0.41 7.68 8.49 -92.71 -0.79 6.89 16 31 H 0.03 0.81 6.50 -2.39 -0.02 0.79 16 32 H 0.09 1.96 8.07 -2.38 -0.02 1.94 16 33 H 0.34 8.69 7.64 -89.70 -0.69 8.00 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.26 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 39 H 0.09 1.34 8.01 -2.39 -0.02 1.32 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.64 7.84 -2.39 -0.02 1.62 16 45 H 0.05 1.45 6.47 -2.39 -0.02 1.43 16 Total: -1.00 -75.17 384.10 1.04 -74.13 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.46 Total: 29.87 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 5.23 Total: -16.56 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -5.36 Total: -102.82 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.76 Total: -20.69 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.16 Total: -8.76 kcal Total: -75.17 1.04 -74.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732226040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.737 kcal (2) G-P(sol) polarization free energy of solvation -75.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds