Wall clock time and date at job start Tue Mar 31 2020 23:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46658 * 134.52535 * 3 2 1 5 5 C 1.34778 * 119.99740 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00023 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.99817 * 179.97438 * 5 4 3 8 8 N 1.46900 * 109.46814 * 180.02562 * 7 5 4 9 9 C 1.48535 * 110.99516 * 287.39621 * 8 7 5 10 10 C 1.55207 * 103.23446 * 200.25940 * 9 8 7 11 11 C 1.54596 * 102.79999 * 37.43370 * 10 9 8 12 12 C 1.52995 * 110.30751 * 219.04885 * 11 10 9 13 13 N 1.46503 * 110.30668 * 96.98109 * 11 10 9 14 14 C 1.34781 * 119.99634 * 62.78904 * 13 11 10 15 15 O 1.21274 * 120.00344 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99423 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47900 * 110.99987 * 170.00265 * 8 7 5 27 27 H 4.40640 * 5.51348 * 180.02562 * 4 1 2 28 28 H 1.08992 * 109.47407 * 14.52146 * 3 2 1 29 29 H 1.09004 * 109.47152 * 254.51790 * 3 2 1 30 30 H 0.97003 * 120.00026 * 359.97438 * 4 3 2 31 31 H 1.08996 * 109.46629 * 60.00083 * 7 5 4 32 32 H 1.08997 * 109.46802 * 300.00100 * 7 5 4 33 33 H 1.09000 * 110.66914 * 318.71502 * 9 8 7 34 34 H 1.08995 * 110.66961 * 81.68216 * 9 8 7 35 35 H 1.08997 * 110.75565 * 279.12572 * 10 9 8 36 36 H 1.08997 * 110.79853 * 155.76515 * 10 9 8 37 37 H 1.09004 * 109.47306 * 297.21094 * 12 11 10 38 38 H 1.09003 * 109.47205 * 57.21187 * 12 11 10 39 39 H 1.09002 * 109.47494 * 177.21329 * 12 11 10 40 40 H 0.96994 * 119.99836 * 242.79025 * 13 11 10 41 41 H 1.09001 * 109.47454 * 60.00304 * 16 14 13 42 42 H 1.09003 * 109.47322 * 299.99933 * 16 14 13 43 43 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 44 44 H 1.09008 * 109.91723 * 26.48881 * 26 8 7 45 45 H 1.08996 * 110.08119 * 265.28998 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.9695 -0.9848 5 6 4.4589 1.1424 -1.1607 6 8 5.2473 0.4964 -0.5035 7 6 4.9607 2.1386 -2.1742 8 7 6.4297 2.1385 -2.1750 9 6 6.9626 2.7913 -0.9518 10 6 8.4130 3.1698 -1.3543 11 6 8.2586 3.5935 -2.8330 12 6 9.4491 3.0958 -3.6550 13 7 8.1448 5.0505 -2.9352 14 6 9.1657 5.8357 -2.5380 15 8 10.1784 5.3361 -2.0956 16 6 9.0488 7.3344 -2.6437 17 16 10.5713 8.1026 -2.0369 18 6 10.1696 9.8025 -2.2684 19 1 9.2103 10.0795 -2.6797 20 6 11.0862 10.7856 -1.9220 21 7 12.2558 10.4479 -1.4210 22 14 10.6607 12.5878 -2.1680 23 1 11.0879 13.0166 -3.5240 24 1 9.1939 12.7734 -2.0293 25 1 11.3620 13.4058 -1.1463 26 6 6.9591 2.9209 -3.3129 27 1 -1.0501 -0.0001 0.0004 28 1 3.0099 -0.9939 -0.2577 29 1 3.0093 0.2752 0.9904 30 1 2.5032 1.4859 -1.5106 31 1 4.5971 3.1333 -1.9166 32 1 4.5971 1.8640 -3.1644 33 1 6.3852 3.6834 -0.7092 34 1 6.9631 2.0951 -0.1133 35 1 9.0753 2.3086 -1.2669 36 1 8.7776 4.0011 -0.7509 37 1 10.3640 3.5612 -3.2883 38 1 9.5290 2.0128 -3.5598 39 1 9.3026 3.3585 -4.7027 40 1 7.3347 5.4501 -3.2888 41 1 8.2051 7.6763 -2.0443 42 1 8.8914 7.6141 -3.6854 43 1 12.8964 11.1349 -1.1793 44 1 6.2358 3.6803 -3.6100 45 1 7.1712 2.2612 -4.1543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733393810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:16 Heat of formation + Delta-G solvation = -0.854546 kcal Electronic energy + Delta-G solvation = -26198.287680 eV Core-core repulsion = 22344.093709 eV Total energy + Delta-G solvation = -3854.193971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63272 -39.79300 -38.03859 -35.90197 -34.52852 -33.11038 -32.43746 -31.93653 -30.04994 -28.83443 -28.41874 -26.82170 -25.49631 -24.71885 -22.03673 -21.04699 -20.77926 -19.45256 -19.10986 -17.88790 -17.42634 -16.84297 -16.32876 -16.16179 -15.90651 -15.58660 -14.89845 -14.82362 -14.80578 -14.50624 -14.10962 -13.90624 -13.75655 -13.61850 -13.18680 -13.16784 -12.83304 -12.64108 -12.39093 -12.08639 -11.90635 -11.64117 -11.37221 -11.33328 -11.07972 -11.03773 -11.02813 -11.00441 -10.85602 -10.77001 -10.11191 -9.82279 -9.55778 -9.24937 -9.07854 -8.87954 -8.72806 -8.24181 -6.50408 -6.22611 -3.92959 1.83182 2.18636 2.29842 2.88215 3.03955 3.09495 3.21241 3.26852 3.30547 3.62690 3.70159 3.84301 4.19445 4.27467 4.30228 4.64924 4.72425 4.86196 4.89862 5.01341 5.06311 5.08803 5.12495 5.13387 5.29402 5.29503 5.33407 5.59418 5.67724 5.78900 5.84184 5.86309 5.87388 5.94431 6.06543 6.12472 6.21974 6.41360 6.44496 6.54088 6.82344 6.93040 7.02977 7.58465 7.71892 7.83264 8.34084 8.63294 9.22745 10.84746 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018045 B = 0.001917 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.332133 B =14599.607972 C =15560.228362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.211 4.211 3 C 0.232 3.768 4 N -0.735 5.735 5 C 0.517 3.483 6 O -0.513 6.513 7 C 0.027 3.973 8 N -0.495 5.495 9 C 0.035 3.965 10 C -0.122 4.122 11 C 0.169 3.831 12 C -0.157 4.157 13 N -0.732 5.732 14 C 0.534 3.466 15 O -0.509 6.509 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.273 1.273 25 H -0.282 1.282 26 C 0.038 3.962 27 H 0.222 0.778 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.403 0.597 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.394 0.606 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.052 0.948 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.067 -19.559 -3.008 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.211 4.211 3 C 0.109 3.891 4 N -0.390 5.390 5 C 0.303 3.697 6 O -0.386 6.386 7 C -0.105 4.105 8 N -0.219 5.219 9 C -0.092 4.092 10 C -0.161 4.161 11 C 0.082 3.918 12 C -0.215 4.215 13 N -0.388 5.388 14 C 0.320 3.680 15 O -0.383 6.383 16 C -0.305 4.305 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.197 1.197 25 H -0.207 1.207 26 C -0.090 4.090 27 H 0.239 0.761 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.228 0.772 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.409 -21.369 -1.736 29.600 hybrid contribution -2.885 3.084 -1.101 4.364 sum -23.294 -18.285 -2.836 29.749 Atomic orbital electron populations 1.25071 0.95988 0.98895 0.98839 1.22940 0.94283 1.01930 1.01960 1.18042 0.83032 0.94150 0.93828 1.45985 1.07392 1.43403 1.42222 1.20550 0.81463 0.83786 0.83920 1.90738 1.54796 1.46542 1.46518 1.22154 0.90969 0.97811 0.99526 1.64587 1.04649 1.49660 1.03029 1.23440 0.95329 0.97053 0.93410 1.22920 0.95828 1.02426 0.94956 1.21008 0.94899 0.79864 0.96047 1.22186 0.99153 1.01193 0.99008 1.46273 1.19281 1.05477 1.67722 1.20236 0.82648 0.88551 0.76524 1.90673 1.29139 1.75368 1.43121 1.23552 1.07822 0.93901 1.05242 1.85389 1.13423 1.01890 1.82408 1.22869 1.04865 0.91306 1.49441 0.91001 1.24989 0.94485 0.99546 0.94535 1.70017 1.06224 1.34011 1.39971 0.86177 0.78551 0.82685 0.78139 1.20269 1.19742 1.20738 1.23202 0.94991 0.96172 0.94682 0.76108 0.88962 0.89001 0.76319 0.91375 0.87676 0.93963 0.88755 0.89754 0.89469 0.89708 0.91595 0.92746 0.77163 0.89468 0.89372 0.92174 0.93025 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 19.25 29.55 0.57 -0.24 16 2 C -0.21 -1.27 13.46 -37.12 -0.50 -1.77 16 3 C 0.23 1.48 6.15 -6.83 -0.04 1.44 16 4 N -0.74 -4.52 5.54 -63.16 -0.35 -4.87 16 5 C 0.52 4.56 7.66 -10.98 -0.08 4.48 16 6 O -0.51 -6.64 15.06 5.55 0.08 -6.56 16 7 C 0.03 0.19 5.19 -4.97 -0.03 0.17 16 8 N -0.50 -4.90 4.91 -231.71 -1.14 -6.04 16 9 C 0.03 0.40 5.94 -1.75 -0.01 0.39 16 10 C -0.12 -1.60 5.85 -24.72 -0.14 -1.75 16 11 C 0.17 1.99 0.94 -130.47 -0.12 1.87 16 12 C -0.16 -1.97 8.14 37.15 0.30 -1.67 16 13 N -0.73 -9.37 5.15 -46.35 -0.24 -9.61 16 14 C 0.53 9.51 7.04 -10.98 -0.08 9.44 16 15 O -0.51 -10.87 12.73 5.56 0.07 -10.80 16 16 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.04 0.34 6.12 -2.76 -0.02 0.32 16 27 H 0.22 0.31 7.80 -54.08 -0.42 -0.11 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.40 1.51 8.45 -40.82 -0.34 1.17 16 31 H 0.07 0.39 7.83 -51.93 -0.41 -0.01 16 32 H 0.11 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.04 0.46 7.81 -51.93 -0.41 0.06 16 34 H 0.09 1.20 7.10 -51.93 -0.37 0.83 16 35 H 0.08 1.12 7.86 -51.93 -0.41 0.71 16 36 H 0.09 1.37 6.68 -51.93 -0.35 1.02 16 37 H 0.08 1.35 6.17 -51.93 -0.32 1.03 16 38 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.39 3.91 8.09 -40.82 -0.33 3.58 16 41 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.05 0.36 7.10 -51.92 -0.37 0.00 16 45 H 0.09 0.77 7.68 -51.93 -0.40 0.37 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -36.30 390.56 -8.54 -44.84 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.62 Total: 2.97 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 0.27 Total: -3.04 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.99 Total: -45.83 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.15 Total: -17.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.30 -8.54 -44.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733393810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.988 kcal (2) G-P(sol) polarization free energy of solvation -36.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds