Wall clock time and date at job start Tue Mar 31 2020 23:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46658 * 134.52535 * 3 2 1 5 5 C 1.34778 * 119.99740 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00023 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.99817 * 179.97438 * 5 4 3 8 8 N 1.46900 * 109.46814 * 180.02562 * 7 5 4 9 9 C 1.48535 * 110.99516 * 287.39621 * 8 7 5 10 10 C 1.55207 * 103.23446 * 200.25940 * 9 8 7 11 11 C 1.54596 * 102.79999 * 37.43370 * 10 9 8 12 12 C 1.52995 * 110.30751 * 219.04885 * 11 10 9 13 13 N 1.46503 * 110.30668 * 96.98109 * 11 10 9 14 14 C 1.34781 * 119.99634 * 62.78904 * 13 11 10 15 15 O 1.21274 * 120.00344 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99423 * 179.97438 * 14 13 11 17 17 S 1.81001 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47900 * 110.99987 * 170.00265 * 8 7 5 27 27 H 4.40640 * 5.51348 * 180.02562 * 4 1 2 28 28 H 1.08992 * 109.47407 * 14.52146 * 3 2 1 29 29 H 1.09004 * 109.47152 * 254.51790 * 3 2 1 30 30 H 0.97003 * 120.00026 * 359.97438 * 4 3 2 31 31 H 1.08996 * 109.46629 * 60.00083 * 7 5 4 32 32 H 1.08997 * 109.46802 * 300.00100 * 7 5 4 33 33 H 1.09000 * 110.66914 * 318.71502 * 9 8 7 34 34 H 1.08995 * 110.66961 * 81.68216 * 9 8 7 35 35 H 1.08997 * 110.75565 * 279.12572 * 10 9 8 36 36 H 1.08997 * 110.79853 * 155.76515 * 10 9 8 37 37 H 1.09004 * 109.47306 * 297.21094 * 12 11 10 38 38 H 1.09003 * 109.47205 * 57.21187 * 12 11 10 39 39 H 1.09002 * 109.47494 * 177.21329 * 12 11 10 40 40 H 0.96994 * 119.99836 * 242.79025 * 13 11 10 41 41 H 1.09001 * 109.47454 * 60.00304 * 16 14 13 42 42 H 1.09003 * 109.47322 * 299.99933 * 16 14 13 43 43 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 44 44 H 1.09008 * 109.91723 * 26.48881 * 26 8 7 45 45 H 1.08996 * 110.08119 * 265.28998 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.9695 -0.9848 5 6 4.4589 1.1424 -1.1607 6 8 5.2473 0.4964 -0.5035 7 6 4.9607 2.1386 -2.1742 8 7 6.4297 2.1385 -2.1750 9 6 6.9626 2.7913 -0.9518 10 6 8.4130 3.1698 -1.3543 11 6 8.2586 3.5935 -2.8330 12 6 9.4491 3.0958 -3.6550 13 7 8.1448 5.0505 -2.9352 14 6 9.1657 5.8357 -2.5380 15 8 10.1784 5.3361 -2.0956 16 6 9.0488 7.3344 -2.6437 17 16 10.5713 8.1026 -2.0369 18 6 10.1696 9.8025 -2.2684 19 1 9.2103 10.0795 -2.6797 20 6 11.0862 10.7856 -1.9220 21 7 12.2558 10.4479 -1.4210 22 14 10.6607 12.5878 -2.1680 23 1 11.0879 13.0166 -3.5240 24 1 9.1939 12.7734 -2.0293 25 1 11.3620 13.4058 -1.1463 26 6 6.9591 2.9209 -3.3129 27 1 -1.0501 -0.0001 0.0004 28 1 3.0099 -0.9939 -0.2577 29 1 3.0093 0.2752 0.9904 30 1 2.5032 1.4859 -1.5106 31 1 4.5971 3.1333 -1.9166 32 1 4.5971 1.8640 -3.1644 33 1 6.3852 3.6834 -0.7092 34 1 6.9631 2.0951 -0.1133 35 1 9.0753 2.3086 -1.2669 36 1 8.7776 4.0011 -0.7509 37 1 10.3640 3.5612 -3.2883 38 1 9.5290 2.0128 -3.5598 39 1 9.3026 3.3585 -4.7027 40 1 7.3347 5.4501 -3.2888 41 1 8.2051 7.6763 -2.0443 42 1 8.8914 7.6141 -3.6854 43 1 12.8964 11.1349 -1.1793 44 1 6.2358 3.6803 -3.6100 45 1 7.1712 2.2612 -4.1543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733393810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:15 Heat of formation + Delta-G solvation = -29.763663 kcal Electronic energy + Delta-G solvation = -26199.541273 eV Core-core repulsion = 22344.093709 eV Total energy + Delta-G solvation = -3855.447564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58379 -40.68174 -39.13451 -36.50434 -35.58276 -34.57878 -33.62899 -33.04379 -31.04806 -29.95404 -29.35450 -27.65200 -27.47493 -25.54317 -23.04081 -22.05185 -21.48678 -20.57560 -19.80810 -19.61691 -18.12965 -17.75033 -17.52346 -16.92783 -16.87549 -16.69296 -16.52561 -16.12291 -16.04069 -15.42024 -15.21100 -14.73408 -14.68450 -14.47412 -14.42748 -14.23657 -14.13521 -13.80859 -13.47555 -13.15791 -13.10482 -12.98595 -12.89208 -12.59844 -12.43779 -12.37603 -11.99395 -11.90592 -11.78261 -11.71635 -11.46473 -11.13914 -10.81604 -10.68809 -10.25380 -10.13341 -10.07278 -9.44274 -8.64936 -8.34273 -6.11692 1.27493 1.39372 1.42227 1.47768 1.57643 1.63017 1.67528 1.82598 2.22159 2.28682 2.45546 2.99882 3.05018 3.33492 3.35121 3.42974 3.62428 3.86362 3.97118 4.00288 4.22194 4.25558 4.31619 4.36169 4.40867 4.49243 4.51367 4.53619 4.57423 4.78314 4.83611 4.85302 4.96006 4.99633 5.07508 5.14841 5.32261 5.36770 5.42055 5.51601 5.79669 5.88301 6.19998 6.52623 6.56814 6.57889 7.07142 7.24998 7.32290 8.74787 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018045 B = 0.001917 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.332133 B =14599.607972 C =15560.228362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.247 4.247 3 C 0.233 3.767 4 N -0.720 5.720 5 C 0.514 3.486 6 O -0.563 6.563 7 C 0.028 3.972 8 N -0.509 5.509 9 C 0.047 3.953 10 C -0.124 4.124 11 C 0.167 3.833 12 C -0.154 4.154 13 N -0.706 5.706 14 C 0.536 3.464 15 O -0.551 6.551 16 C -0.130 4.130 17 S -0.149 6.149 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.258 1.258 25 H -0.279 1.279 26 C 0.048 3.952 27 H 0.252 0.748 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.417 0.583 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.414 0.586 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.083 0.917 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.110 -18.967 -5.098 33.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.248 4.248 3 C 0.110 3.890 4 N -0.375 5.375 5 C 0.301 3.699 6 O -0.440 6.440 7 C -0.103 4.103 8 N -0.234 5.234 9 C -0.080 4.080 10 C -0.163 4.163 11 C 0.081 3.919 12 C -0.212 4.212 13 N -0.361 5.361 14 C 0.322 3.678 15 O -0.429 6.429 16 C -0.281 4.281 17 S 0.078 5.922 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.193 1.193 24 H -0.182 1.182 25 H -0.204 1.204 26 C -0.080 4.080 27 H 0.269 0.731 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.253 0.747 31 H 0.109 0.891 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.252 0.748 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.548 -20.783 -3.866 32.395 hybrid contribution -1.746 2.755 -0.445 3.292 sum -26.294 -18.028 -4.312 32.171 Atomic orbital electron populations 1.25860 0.96722 0.97082 0.97017 1.23003 0.94496 1.03614 1.03648 1.17920 0.83770 0.93882 0.93429 1.45873 1.06962 1.42910 1.41749 1.20973 0.81735 0.83543 0.83687 1.90728 1.56132 1.48634 1.48551 1.22291 0.89048 0.98354 1.00618 1.64518 1.06730 1.49828 1.02300 1.23205 0.94191 0.96812 0.93836 1.22820 0.96914 1.00816 0.95765 1.21129 0.96765 0.78955 0.95092 1.22129 0.97675 1.01678 0.99716 1.45985 1.18527 1.05730 1.65864 1.19966 0.83152 0.88090 0.76620 1.90680 1.31161 1.75750 1.45261 1.23388 1.03864 0.94717 1.06153 1.85585 1.19528 1.03414 1.83705 1.23214 1.05351 0.91552 1.49340 0.89945 1.26122 0.94171 1.04962 0.93908 1.70187 1.07583 1.35743 1.41268 0.84966 0.78956 0.75857 0.78286 1.19289 1.18166 1.20404 1.23170 0.93522 0.96886 0.94394 0.73146 0.89620 0.89982 0.74669 0.89095 0.84399 0.93299 0.90747 0.90866 0.92681 0.93613 0.90385 0.91213 0.74839 0.87594 0.87336 0.92042 0.89897 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 19.25 74.32 1.43 0.37 16 2 C -0.25 -2.67 13.46 31.12 0.42 -2.26 16 3 C 0.23 2.91 6.15 84.57 0.52 3.43 16 4 N -0.72 -7.75 5.54 -472.12 -2.61 -10.36 16 5 C 0.51 8.32 7.66 87.66 0.67 8.99 16 6 O -0.56 -14.70 15.06 -3.04 -0.05 -14.74 16 7 C 0.03 0.30 5.19 85.56 0.44 0.74 16 8 N -0.51 -8.82 4.91 -887.00 -4.35 -13.17 16 9 C 0.05 1.05 5.94 86.74 0.52 1.56 16 10 C -0.12 -3.32 5.85 31.89 0.19 -3.13 16 11 C 0.17 3.68 0.94 4.48 0.00 3.69 16 12 C -0.15 -3.74 8.14 71.98 0.59 -3.15 16 13 N -0.71 -16.59 5.15 -418.96 -2.16 -18.74 16 14 C 0.54 18.92 7.04 87.66 0.62 19.54 16 15 O -0.55 -24.49 12.73 -3.01 -0.04 -24.53 16 16 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 17 S -0.15 -8.22 20.57 -56.49 -1.16 -9.39 16 18 C -0.55 -31.03 9.50 67.96 0.65 -30.38 16 19 H 0.08 4.33 7.80 -2.92 -0.02 4.30 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 22 Si 1.00 43.39 29.55 68.60 2.03 45.41 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.05 0.67 6.12 86.45 0.53 1.20 16 27 H 0.25 -0.17 7.80 -4.41 -0.03 -0.20 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.42 2.05 8.45 -92.71 -0.78 1.27 16 31 H 0.09 0.63 7.83 -2.39 -0.02 0.61 16 32 H 0.14 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.05 1.00 7.81 -2.39 -0.02 0.98 16 34 H 0.07 1.97 7.10 -2.39 -0.02 1.95 16 35 H 0.07 2.07 7.86 -2.39 -0.02 2.05 16 36 H 0.05 1.83 6.68 -2.39 -0.02 1.81 16 37 H 0.04 1.50 6.17 -2.39 -0.01 1.48 16 38 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.41 6.56 8.09 -92.71 -0.75 5.81 16 41 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 42 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.08 0.68 7.10 -2.38 -0.02 0.67 16 45 H 0.11 1.30 7.68 -2.39 -0.02 1.28 16 Total: -1.00 -84.25 390.56 -1.10 -85.34 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -0.52 Total: 18.67 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 7.47 Total: -2.74 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -8.84 Total: -98.02 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.08 Total: -39.27 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.39 kcal Total: -84.25 -1.10 -85.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733393810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.581 kcal (2) G-P(sol) polarization free energy of solvation -84.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds