Wall clock time and date at job start Tue Mar 31 2020 23:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46709 * 118.31530 * 3 2 1 5 5 C 1.34780 * 119.99563 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00407 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99977 * 179.97438 * 5 4 3 8 8 N 1.46896 * 109.47263 * 180.02562 * 7 5 4 9 9 C 1.48529 * 111.00073 * 52.60847 * 8 7 5 10 10 C 1.54943 * 103.23110 * 159.72217 * 9 8 7 11 11 C 1.54593 * 102.91873 * 322.58517 * 10 9 8 12 12 C 1.53004 * 110.31247 * 140.87180 * 11 10 9 13 13 N 1.46500 * 110.30840 * 263.03884 * 11 10 9 14 14 C 1.34777 * 120.00130 * 295.71908 * 13 11 10 15 15 O 1.21277 * 119.99662 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00030 * 179.97438 * 14 13 11 17 17 S 1.80999 * 109.46966 * 179.97438 * 16 14 13 18 18 C 1.76209 * 99.99736 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99683 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99692 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47450 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46950 * 120.00463 * 22 20 18 25 25 H 1.48500 * 109.47037 * 239.99586 * 22 20 18 26 26 C 1.47906 * 111.00163 * 170.00158 * 8 7 5 27 27 H 4.40635 * 5.51441 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47022 * 358.31116 * 3 2 1 29 29 H 1.09007 * 109.46700 * 238.31056 * 3 2 1 30 30 H 0.97001 * 120.00397 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.46929 * 60.00351 * 7 5 4 32 32 H 1.09006 * 109.47187 * 300.00638 * 7 5 4 33 33 H 1.08995 * 110.67216 * 41.28703 * 9 8 7 34 34 H 1.09004 * 110.80922 * 278.21881 * 9 8 7 35 35 H 1.08999 * 110.72722 * 204.22642 * 10 9 8 36 36 H 1.09004 * 110.87493 * 81.01227 * 10 9 8 37 37 H 1.08994 * 109.46718 * 304.28277 * 12 11 10 38 38 H 1.08996 * 109.46480 * 64.27931 * 12 11 10 39 39 H 1.09001 * 109.47097 * 184.28167 * 12 11 10 40 40 H 0.97010 * 120.00071 * 115.71306 * 13 11 10 41 41 H 1.09001 * 109.47370 * 300.00203 * 16 14 13 42 42 H 1.09003 * 109.47024 * 60.00076 * 16 14 13 43 43 H 0.96999 * 119.99992 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.91583 * 94.80499 * 26 8 7 45 45 H 1.09004 * 109.91554 * 333.51082 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6560 -1.2160 5 6 4.4590 0.7739 -1.4326 6 8 5.2474 0.3370 -0.6211 7 6 4.9610 1.4475 -2.6836 8 7 6.4300 1.4483 -2.6836 9 6 6.9630 0.0794 -2.4643 10 6 8.4109 0.1713 -3.0082 11 6 8.2596 1.0932 -4.2399 12 6 9.4504 2.0490 -4.3374 13 7 8.1463 0.2940 -5.4624 14 6 9.1779 -0.4755 -5.8625 15 8 10.2002 -0.5059 -5.2107 16 6 9.0612 -1.2981 -7.1198 17 16 10.5993 -2.2140 -7.3865 18 6 10.1951 -3.0636 -8.8764 19 1 9.2264 -2.9226 -9.3326 20 6 11.1220 -3.9133 -9.4641 21 7 12.3028 -4.0848 -8.9082 22 14 10.6937 -4.8134 -11.0438 23 1 9.3151 -4.4523 -11.4612 24 1 11.6519 -4.4255 -12.1100 25 1 10.7736 -6.2787 -10.8159 26 6 6.9599 1.8820 -3.9946 27 1 -1.0501 0.0001 0.0003 28 1 3.0098 -1.0263 0.0303 29 1 3.0090 0.5407 0.8745 30 1 2.5035 1.0051 -1.8653 31 1 4.5968 2.4744 -2.7145 32 1 4.5983 0.9070 -3.5579 33 1 6.3859 -0.6532 -3.0284 34 1 6.9659 -0.1696 -1.4030 35 1 8.7746 -0.8125 -3.3051 36 1 9.0755 0.6199 -2.2699 37 1 9.5441 2.6087 -3.4069 38 1 10.3619 1.4770 -4.5108 39 1 9.2933 2.7419 -5.1640 40 1 7.3287 0.3185 -5.9840 41 1 8.2329 -1.9995 -7.0195 42 1 8.8789 -0.6396 -7.9692 43 1 12.9504 -4.6789 -9.3187 44 1 7.1725 2.9508 -3.9740 45 1 6.2367 1.6595 -4.7794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733393813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:20 Heat of formation + Delta-G solvation = 2.796138 kcal Electronic energy + Delta-G solvation = -26325.719815 eV Core-core repulsion = 22471.684150 eV Total energy + Delta-G solvation = -3854.035665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73700 -39.80214 -37.99520 -35.95848 -34.47057 -33.15472 -32.43230 -31.92752 -30.02836 -28.81639 -28.40512 -26.82447 -25.49145 -24.68048 -22.02018 -21.06070 -20.82531 -19.47333 -19.06414 -17.87581 -17.38220 -16.82766 -16.30781 -16.26724 -15.90659 -15.65812 -14.89238 -14.82225 -14.79763 -14.49548 -14.09968 -13.90154 -13.78204 -13.59115 -13.16261 -13.15419 -12.81663 -12.63913 -12.32495 -12.19573 -11.87579 -11.63397 -11.38665 -11.24895 -11.08081 -11.05528 -11.02839 -10.94846 -10.88541 -10.75977 -9.95796 -9.80588 -9.58310 -9.22411 -9.08024 -8.84018 -8.71072 -8.22918 -6.49610 -6.22206 -3.92363 1.82011 2.16460 2.25238 2.88331 3.04447 3.11038 3.20844 3.27490 3.31810 3.63379 3.69394 3.85354 4.19863 4.24961 4.33157 4.69892 4.76695 4.87239 4.91467 5.00604 5.04855 5.13021 5.14237 5.15071 5.28972 5.36003 5.36283 5.60633 5.70610 5.75387 5.85542 5.88286 5.88803 6.02585 6.13512 6.19272 6.25164 6.44195 6.48685 6.56818 6.84959 6.92399 6.99273 7.59336 7.73644 7.78511 8.34885 8.64982 9.23289 10.85236 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002029 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.485813 B =13796.650373 C =14964.868038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.211 4.211 3 C 0.231 3.769 4 N -0.733 5.733 5 C 0.516 3.484 6 O -0.515 6.515 7 C 0.027 3.973 8 N -0.497 5.497 9 C 0.031 3.969 10 C -0.125 4.125 11 C 0.168 3.832 12 C -0.158 4.158 13 N -0.732 5.732 14 C 0.534 3.466 15 O -0.509 6.509 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.037 3.963 27 H 0.222 0.778 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.403 0.597 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.394 0.606 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.332 13.805 14.140 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.212 4.212 3 C 0.109 3.891 4 N -0.387 5.387 5 C 0.302 3.698 6 O -0.390 6.390 7 C -0.104 4.104 8 N -0.222 5.222 9 C -0.095 4.095 10 C -0.164 4.164 11 C 0.081 3.919 12 C -0.216 4.216 13 N -0.387 5.387 14 C 0.320 3.680 15 O -0.383 6.383 16 C -0.305 4.305 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.092 4.092 27 H 0.239 0.761 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.238 0.762 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.228 0.772 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.671 13.701 16.246 29.647 hybrid contribution -2.898 -0.914 -3.096 4.338 sum -23.570 12.787 13.150 29.866 Atomic orbital electron populations 1.25070 0.95991 0.99822 0.97804 1.22922 0.94272 1.01451 1.02529 1.18058 0.83081 0.99415 0.88535 1.45970 1.07315 1.61649 1.23766 1.20556 0.81584 0.79270 0.88373 1.90699 1.54366 1.47426 1.46477 1.22231 0.91042 1.02135 0.95021 1.64782 1.04394 1.24342 1.28651 1.23565 0.94540 0.87831 1.03614 1.22917 0.96314 1.00990 0.96178 1.21026 0.94888 0.90891 0.85064 1.22197 0.99272 0.98545 1.01596 1.46266 1.18092 1.47598 1.26760 1.20231 0.82803 0.78846 0.86080 1.90667 1.28860 1.63481 1.55302 1.23550 1.07872 1.01953 0.97132 1.85392 1.11750 1.53361 1.32645 1.22912 1.03766 1.31206 1.10498 0.90951 1.24992 0.94476 0.96084 0.98052 1.70027 1.05413 1.35770 1.39020 0.86123 0.78500 0.79182 0.81723 1.19662 1.20553 1.20572 1.23255 0.95078 1.00910 0.89928 0.76097 0.88930 0.88891 0.76242 0.87473 0.91523 0.94417 0.87007 0.89729 0.89875 0.91644 0.89541 0.92814 0.77205 0.89477 0.89380 0.92232 0.88755 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 19.25 29.55 0.57 -0.24 16 2 C -0.21 -1.28 13.46 -37.12 -0.50 -1.78 16 3 C 0.23 1.47 6.15 -6.83 -0.04 1.43 16 4 N -0.73 -4.44 5.54 -63.16 -0.35 -4.79 16 5 C 0.52 4.47 7.54 -10.99 -0.08 4.39 16 6 O -0.52 -6.44 13.52 5.56 0.08 -6.37 16 7 C 0.03 0.19 5.52 -4.98 -0.03 0.16 16 8 N -0.50 -4.94 5.26 -231.89 -1.22 -6.16 16 9 C 0.03 0.37 5.30 -1.90 -0.01 0.36 16 10 C -0.13 -1.68 5.85 -24.87 -0.15 -1.83 16 11 C 0.17 2.03 0.94 -130.46 -0.12 1.91 16 12 C -0.16 -2.01 8.15 37.16 0.30 -1.71 16 13 N -0.73 -9.63 5.15 -46.35 -0.24 -9.87 16 14 C 0.53 9.68 7.04 -10.99 -0.08 9.60 16 15 O -0.51 -11.02 12.75 5.56 0.07 -10.95 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.04 0.33 6.16 -2.75 -0.02 0.31 16 27 H 0.22 0.32 7.80 -54.09 -0.42 -0.10 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.40 1.48 8.45 -40.82 -0.34 1.14 16 31 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.38 7.81 -51.93 -0.41 -0.03 16 33 H 0.04 0.45 8.02 -51.93 -0.42 0.04 16 34 H 0.11 1.52 5.97 -51.93 -0.31 1.21 16 35 H 0.08 1.36 6.81 -51.93 -0.35 1.01 16 36 H 0.08 1.12 7.84 -51.93 -0.41 0.72 16 37 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.09 1.40 6.04 -51.93 -0.31 1.08 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.39 4.05 8.09 -40.82 -0.33 3.72 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.09 0.77 7.68 -51.93 -0.40 0.37 16 45 H 0.05 0.38 6.89 -51.93 -0.36 0.02 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -36.18 387.87 -8.61 -44.79 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.56 Total: 3.49 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 0.27 Total: -3.19 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -1.07 Total: -46.24 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.15 Total: -17.31 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.18 -8.61 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733393813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.586 kcal (2) G-P(sol) polarization free energy of solvation -36.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds