Wall clock time and date at job start Tue Mar 31 2020 23:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46709 * 118.31530 * 3 2 1 5 5 C 1.34780 * 119.99563 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00407 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99977 * 179.97438 * 5 4 3 8 8 N 1.46896 * 109.47263 * 180.02562 * 7 5 4 9 9 C 1.48529 * 111.00073 * 52.60847 * 8 7 5 10 10 C 1.54943 * 103.23110 * 159.72217 * 9 8 7 11 11 C 1.54593 * 102.91873 * 322.58517 * 10 9 8 12 12 C 1.53004 * 110.31247 * 140.87180 * 11 10 9 13 13 N 1.46500 * 110.30840 * 263.03884 * 11 10 9 14 14 C 1.34777 * 120.00130 * 295.71908 * 13 11 10 15 15 O 1.21277 * 119.99662 * 359.97438 * 14 13 11 16 16 C 1.50699 * 120.00030 * 179.97438 * 14 13 11 17 17 S 1.80999 * 109.46966 * 179.97438 * 16 14 13 18 18 C 1.76209 * 99.99736 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99683 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99692 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47450 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46950 * 120.00463 * 22 20 18 25 25 H 1.48500 * 109.47037 * 239.99586 * 22 20 18 26 26 C 1.47906 * 111.00163 * 170.00158 * 8 7 5 27 27 H 4.40635 * 5.51441 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47022 * 358.31116 * 3 2 1 29 29 H 1.09007 * 109.46700 * 238.31056 * 3 2 1 30 30 H 0.97001 * 120.00397 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.46929 * 60.00351 * 7 5 4 32 32 H 1.09006 * 109.47187 * 300.00638 * 7 5 4 33 33 H 1.08995 * 110.67216 * 41.28703 * 9 8 7 34 34 H 1.09004 * 110.80922 * 278.21881 * 9 8 7 35 35 H 1.08999 * 110.72722 * 204.22642 * 10 9 8 36 36 H 1.09004 * 110.87493 * 81.01227 * 10 9 8 37 37 H 1.08994 * 109.46718 * 304.28277 * 12 11 10 38 38 H 1.08996 * 109.46480 * 64.27931 * 12 11 10 39 39 H 1.09001 * 109.47097 * 184.28167 * 12 11 10 40 40 H 0.97010 * 120.00071 * 115.71306 * 13 11 10 41 41 H 1.09001 * 109.47370 * 300.00203 * 16 14 13 42 42 H 1.09003 * 109.47024 * 60.00076 * 16 14 13 43 43 H 0.96999 * 119.99992 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.91583 * 94.80499 * 26 8 7 45 45 H 1.09004 * 109.91554 * 333.51082 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6560 -1.2160 5 6 4.4590 0.7739 -1.4326 6 8 5.2474 0.3370 -0.6211 7 6 4.9610 1.4475 -2.6836 8 7 6.4300 1.4483 -2.6836 9 6 6.9630 0.0794 -2.4643 10 6 8.4109 0.1713 -3.0082 11 6 8.2596 1.0932 -4.2399 12 6 9.4504 2.0490 -4.3374 13 7 8.1463 0.2940 -5.4624 14 6 9.1779 -0.4755 -5.8625 15 8 10.2002 -0.5059 -5.2107 16 6 9.0612 -1.2981 -7.1198 17 16 10.5993 -2.2140 -7.3865 18 6 10.1951 -3.0636 -8.8764 19 1 9.2264 -2.9226 -9.3326 20 6 11.1220 -3.9133 -9.4641 21 7 12.3028 -4.0848 -8.9082 22 14 10.6937 -4.8134 -11.0438 23 1 9.3151 -4.4523 -11.4612 24 1 11.6519 -4.4255 -12.1100 25 1 10.7736 -6.2787 -10.8159 26 6 6.9599 1.8820 -3.9946 27 1 -1.0501 0.0001 0.0003 28 1 3.0098 -1.0263 0.0303 29 1 3.0090 0.5407 0.8745 30 1 2.5035 1.0051 -1.8653 31 1 4.5968 2.4744 -2.7145 32 1 4.5983 0.9070 -3.5579 33 1 6.3859 -0.6532 -3.0284 34 1 6.9659 -0.1696 -1.4030 35 1 8.7746 -0.8125 -3.3051 36 1 9.0755 0.6199 -2.2699 37 1 9.5441 2.6087 -3.4069 38 1 10.3619 1.4770 -4.5108 39 1 9.2933 2.7419 -5.1640 40 1 7.3287 0.3185 -5.9840 41 1 8.2329 -1.9995 -7.0195 42 1 8.8789 -0.6396 -7.9692 43 1 12.9504 -4.6789 -9.3187 44 1 7.1725 2.9508 -3.9740 45 1 6.2367 1.6595 -4.7794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733393813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:19 Heat of formation + Delta-G solvation = -26.255876 kcal Electronic energy + Delta-G solvation = -26326.979605 eV Core-core repulsion = 22471.684150 eV Total energy + Delta-G solvation = -3855.295455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65345 -40.75640 -39.09503 -36.56670 -35.53246 -34.58680 -33.66863 -33.05282 -31.05164 -29.94988 -29.35406 -27.66171 -27.48440 -25.51616 -23.04866 -22.03932 -21.57642 -20.59716 -19.81666 -19.58875 -18.11796 -17.72889 -17.51960 -16.98519 -16.88592 -16.75670 -16.52582 -16.20295 -16.05270 -15.40252 -15.21297 -14.74207 -14.69726 -14.48532 -14.42972 -14.25744 -14.13645 -13.79811 -13.45698 -13.16433 -13.08612 -13.05627 -12.91769 -12.58616 -12.46556 -12.32368 -12.01475 -11.93442 -11.74816 -11.70156 -11.46975 -11.16230 -10.70063 -10.67852 -10.26037 -10.16238 -10.04907 -9.44613 -8.65784 -8.35138 -6.12587 1.26874 1.38234 1.40629 1.47169 1.57708 1.57892 1.66462 1.81769 2.21954 2.27842 2.45104 2.99048 3.02824 3.32658 3.34095 3.44636 3.63177 3.86976 3.95895 3.99727 4.22677 4.29797 4.30779 4.35284 4.44666 4.48571 4.50635 4.54383 4.57033 4.79287 4.84222 4.87468 4.97820 4.99334 5.10798 5.15300 5.37029 5.38540 5.41583 5.51942 5.79352 5.89469 6.19543 6.48961 6.55943 6.56620 7.06335 7.20991 7.31207 8.74246 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002029 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.485813 B =13796.650373 C =14964.868038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.248 4.248 3 C 0.232 3.768 4 N -0.718 5.718 5 C 0.511 3.489 6 O -0.562 6.562 7 C 0.027 3.973 8 N -0.507 5.507 9 C 0.046 3.954 10 C -0.127 4.127 11 C 0.166 3.834 12 C -0.154 4.154 13 N -0.706 5.706 14 C 0.536 3.464 15 O -0.551 6.551 16 C -0.130 4.130 17 S -0.149 6.149 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.046 3.954 27 H 0.252 0.748 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.417 0.583 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.413 0.587 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.114 0.886 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.316 15.360 12.559 33.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.248 4.248 3 C 0.110 3.890 4 N -0.372 5.372 5 C 0.299 3.701 6 O -0.440 6.440 7 C -0.103 4.103 8 N -0.232 5.232 9 C -0.082 4.082 10 C -0.166 4.166 11 C 0.079 3.921 12 C -0.212 4.212 13 N -0.362 5.362 14 C 0.321 3.679 15 O -0.428 6.428 16 C -0.281 4.281 17 S 0.078 5.922 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.081 4.081 27 H 0.269 0.731 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.254 0.746 31 H 0.157 0.843 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.251 0.749 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.132 0.868 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.749 15.299 14.650 32.576 hybrid contribution -1.781 -1.323 -2.483 3.330 sum -26.530 13.976 12.167 32.361 Atomic orbital electron populations 1.25859 0.96729 0.98001 0.96021 1.22994 0.94498 1.03126 1.04201 1.17932 0.83796 0.98795 0.88495 1.45856 1.06889 1.60662 1.23802 1.20965 0.81883 0.78774 0.88517 1.90697 1.55622 1.49570 1.48148 1.22387 0.89036 1.04137 0.94749 1.64739 1.06515 1.22576 1.29398 1.23280 0.93412 0.89313 1.02180 1.22832 0.97316 0.99456 0.96968 1.21166 0.96873 0.90493 0.83524 1.22138 0.97707 0.98452 1.02949 1.45994 1.17353 1.45902 1.26902 1.19968 0.83322 0.79234 0.85337 1.90674 1.30858 1.64959 1.56329 1.23388 1.03817 1.01935 0.98994 1.85584 1.17899 1.55326 1.33400 1.23245 1.04246 1.31348 1.10528 0.89967 1.26131 0.94166 0.96919 1.02008 1.70192 1.06776 1.36775 1.41054 0.84909 0.78935 0.77544 0.76580 1.17974 1.19894 1.20028 1.23238 0.93503 1.01115 0.90274 0.73141 0.89967 0.89527 0.74603 0.84316 0.89096 0.94540 0.89058 0.93127 0.90744 0.90276 0.93508 0.91219 0.74938 0.87703 0.87309 0.92023 0.86809 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 19.25 74.32 1.43 0.36 16 2 C -0.25 -2.70 13.46 31.13 0.42 -2.28 16 3 C 0.23 2.91 6.15 84.57 0.52 3.43 16 4 N -0.72 -7.62 5.54 -472.12 -2.61 -10.23 16 5 C 0.51 8.14 7.54 87.66 0.66 8.80 16 6 O -0.56 -14.21 13.52 -3.03 -0.04 -14.25 16 7 C 0.03 0.29 5.52 85.56 0.47 0.76 16 8 N -0.51 -8.81 5.26 -887.56 -4.67 -13.48 16 9 C 0.05 1.07 5.30 86.65 0.46 1.53 16 10 C -0.13 -3.49 5.85 31.80 0.19 -3.30 16 11 C 0.17 3.76 0.94 4.48 0.00 3.76 16 12 C -0.15 -3.80 8.15 71.98 0.59 -3.21 16 13 N -0.71 -17.24 5.15 -418.95 -2.16 -19.40 16 14 C 0.54 19.33 7.04 87.66 0.62 19.95 16 15 O -0.55 -24.85 12.75 -3.02 -0.04 -24.89 16 16 C -0.13 -5.09 6.16 71.24 0.44 -4.66 16 17 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 18 C -0.55 -31.20 9.50 67.95 0.65 -30.56 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 22 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C 0.05 0.66 6.16 86.45 0.53 1.20 16 27 H 0.25 -0.14 7.80 -4.41 -0.03 -0.18 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.42 2.00 8.45 -92.71 -0.78 1.22 16 31 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.59 7.81 -2.38 -0.02 0.57 16 33 H 0.04 0.85 8.02 -2.39 -0.02 0.83 16 34 H 0.09 2.59 5.97 -2.39 -0.01 2.57 16 35 H 0.05 1.73 6.81 -2.39 -0.02 1.72 16 36 H 0.07 2.13 7.84 -2.39 -0.02 2.11 16 37 H 0.08 1.70 8.11 -2.39 -0.02 1.68 16 38 H 0.05 1.56 6.04 -2.39 -0.01 1.54 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.41 6.98 8.09 -92.70 -0.75 6.22 16 41 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 42 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.11 1.31 7.68 -2.39 -0.02 1.29 16 45 H 0.08 0.72 6.89 -2.38 -0.02 0.71 16 Total: -1.00 -83.95 387.87 -1.44 -85.39 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.51 Total: 19.63 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 7.44 Total: -3.04 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -9.15 Total: -99.11 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.08 Total: -39.14 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -83.95 -1.44 -85.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733393813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.138 kcal (2) G-P(sol) polarization free energy of solvation -83.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds