Wall clock time and date at job start Tue Mar 31 2020 22:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00264 * 2 1 4 4 H 1.48491 * 109.47045 * 269.99853 * 3 2 1 5 5 H 1.48505 * 109.46793 * 29.99743 * 3 2 1 6 6 H 1.48497 * 109.47127 * 149.99483 * 3 2 1 7 7 C 1.38809 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99910 * 196.70916 * 7 2 1 9 9 N 1.36941 * 120.00204 * 16.71268 * 7 2 1 10 10 C 1.46928 * 120.63239 * 209.99721 * 9 7 2 11 11 C 1.53187 * 108.77785 * 233.63247 * 10 9 7 12 12 C 1.53047 * 109.31053 * 305.36358 * 11 10 9 13 13 C 1.53044 * 109.53484 * 61.36551 * 12 11 10 14 14 C 1.53005 * 109.49670 * 178.68027 * 13 12 11 15 15 O 1.42896 * 109.47475 * 185.45994 * 14 13 12 16 16 N 1.46500 * 109.49806 * 58.62014 * 13 12 11 17 17 C 1.34782 * 120.00194 * 57.98169 * 16 13 12 18 18 O 1.21281 * 119.99669 * 5.09958 * 17 16 13 19 19 C 1.50699 * 119.99779 * 185.10286 * 17 16 13 20 20 C 1.53006 * 109.46720 * 179.97438 * 19 17 16 21 21 C 1.50693 * 109.46915 * 179.97438 * 20 19 17 22 22 C 1.33645 * 126.03828 * 90.00331 * 21 20 19 23 23 N 1.31774 * 114.50282 * 179.97438 * 22 21 20 24 24 C 1.29026 * 117.12550 * 0.02562 * 23 22 21 25 25 S 1.70975 * 110.16895 * 359.72627 * 24 23 22 26 26 C 1.46922 * 120.62829 * 30.02033 * 9 7 2 27 27 H 0.97005 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.58467 * 113.83991 * 10 9 7 29 29 H 1.08999 * 109.70046 * 353.48677 * 10 9 7 30 30 H 1.08992 * 109.50140 * 185.41649 * 11 10 9 31 31 H 1.08999 * 109.50294 * 65.31196 * 11 10 9 32 32 H 1.08994 * 109.46114 * 301.34335 * 12 11 10 33 33 H 1.08997 * 109.45871 * 181.37953 * 12 11 10 34 34 H 1.09009 * 109.46750 * 65.45741 * 14 13 12 35 35 H 1.08996 * 109.47479 * 305.46679 * 14 13 12 36 36 H 0.96697 * 113.99910 * 180.02562 * 15 14 13 37 37 H 0.96995 * 120.00281 * 237.97967 * 16 13 12 38 38 H 1.08999 * 109.47075 * 299.99455 * 19 17 16 39 39 H 1.08996 * 109.47117 * 60.00009 * 19 17 16 40 40 H 1.09000 * 109.47390 * 300.00306 * 20 19 17 41 41 H 1.09005 * 109.46955 * 60.00115 * 20 19 17 42 42 H 1.07998 * 122.74443 * 0.02562 * 22 21 20 43 43 H 1.08001 * 124.91634 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.58672 * 6.58373 * 26 9 7 45 45 H 1.08998 * 109.58901 * 246.15299 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0560 -1.2218 0.2695 9 7 1.3688 -2.3632 -0.3400 10 6 1.7890 -3.6475 0.2370 11 6 2.0631 -4.6338 -0.9026 12 6 0.8286 -4.7230 -1.8027 13 6 0.5392 -3.3493 -2.4121 14 6 -0.6753 -3.4467 -3.3375 15 8 -0.8683 -2.1972 -4.0034 16 7 1.7035 -2.8995 -3.1791 17 6 2.1723 -3.6507 -4.1953 18 8 1.5768 -4.6513 -4.5345 19 6 3.4364 -3.2474 -4.9097 20 6 3.7452 -4.2626 -6.0120 21 6 5.0089 -3.8589 -6.7268 22 6 6.2502 -4.2311 -6.4001 23 7 7.1910 -3.7436 -7.1835 24 6 6.8126 -2.9805 -8.1526 25 16 5.1105 -2.8188 -8.1455 26 6 0.2478 -2.3483 -1.2896 27 1 -0.4850 0.8401 -0.0004 28 1 0.9966 -4.0378 0.8755 29 1 2.6961 -3.5070 0.8248 30 1 2.2824 -5.6175 -0.4875 31 1 2.9152 -4.2869 -1.4871 32 1 -0.0287 -5.0463 -1.2124 33 1 1.0122 -5.4427 -2.6005 34 1 -1.5617 -3.6859 -2.7497 35 1 -0.5072 -4.2301 -4.0765 36 1 -1.6232 -2.1860 -4.6076 37 1 2.1370 -2.0610 -2.9558 38 1 3.3047 -2.2597 -5.3515 39 1 4.2625 -3.2205 -4.1992 40 1 3.8770 -5.2502 -5.5699 41 1 2.9191 -4.2899 -6.7226 42 1 6.4646 -4.8790 -5.5631 43 1 7.4747 -2.5147 -8.8675 44 1 0.1388 -1.3488 -1.7105 45 1 -0.6703 -2.6329 -0.7756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733587824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:50 Heat of formation + Delta-G solvation = -23.944171 kcal Electronic energy + Delta-G solvation = -28306.606799 eV Core-core repulsion = 24451.411588 eV Total energy + Delta-G solvation = -3855.195212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.09335 -39.70930 -37.56933 -35.90528 -34.22024 -33.66314 -32.55130 -30.55131 -29.91602 -29.02900 -25.96566 -25.45043 -25.08146 -23.52761 -22.26087 -20.90490 -20.22439 -19.88085 -18.66886 -18.20368 -17.06496 -16.77109 -16.65049 -15.79135 -15.42513 -15.05288 -14.78444 -14.49348 -14.16833 -14.09647 -13.97862 -13.80082 -13.45188 -13.11605 -12.93878 -12.66530 -12.42664 -12.37621 -12.14114 -11.91432 -11.72944 -11.45101 -11.16937 -11.00155 -10.97085 -10.77710 -10.48205 -10.23423 -10.01146 -9.88279 -9.83212 -9.64748 -9.60879 -9.43095 -9.14467 -8.89931 -8.54583 -8.36051 -6.71370 -5.85414 -3.30541 0.51262 1.16421 1.56283 2.65504 3.06903 3.33328 3.41129 3.42014 3.68643 4.16783 4.43540 4.65480 4.72002 4.89725 4.99786 5.06440 5.22966 5.33556 5.34423 5.41731 5.56384 5.58986 5.69787 5.81328 5.81890 5.89135 5.93559 5.95228 6.03367 6.10059 6.30013 6.36877 6.47199 6.49509 6.64186 6.80048 6.95069 7.05839 7.29776 7.50013 7.56897 7.75345 8.04986 8.18633 8.39605 8.74345 9.13984 9.76912 10.35490 11.22652 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.003477 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.443191 B = 8051.075773 C = 9010.632670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.009 3.991 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.127 4.127 12 C -0.120 4.120 13 C 0.157 3.843 14 C 0.069 3.931 15 O -0.560 6.560 16 N -0.684 5.684 17 C 0.515 3.485 18 O -0.560 6.560 19 C -0.138 4.138 20 C -0.024 4.024 21 C -0.205 4.205 22 C 0.027 3.973 23 N -0.470 5.470 24 C 0.009 3.991 25 S 0.119 5.881 26 C 0.177 3.823 27 H 0.255 0.745 28 H 0.017 0.983 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.367 0.633 37 H 0.408 0.592 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.176 0.824 43 H 0.197 0.803 44 H 0.099 0.901 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.637 -7.203 -14.159 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.167 4.167 12 C -0.159 4.159 13 C 0.069 3.931 14 C -0.010 4.010 15 O -0.364 6.364 16 N -0.333 5.333 17 C 0.301 3.699 18 O -0.440 6.440 19 C -0.179 4.179 20 C -0.064 4.064 21 C -0.326 4.326 22 C -0.123 4.123 23 N -0.183 5.183 24 C -0.289 4.289 25 S 0.371 5.629 26 C 0.050 3.950 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.212 0.788 37 H 0.244 0.756 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.193 0.807 43 H 0.214 0.786 44 H 0.117 0.883 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.557 -7.143 -14.543 17.129 hybrid contribution 0.337 0.679 0.530 0.925 sum 5.894 -6.463 -14.013 16.519 Atomic orbital electron populations 1.70013 1.05282 1.25707 1.52892 1.25097 0.95218 0.98440 1.00320 0.86340 0.79166 0.83781 0.77758 1.21328 1.21750 1.20435 1.19146 0.92452 0.84560 1.42927 0.91678 1.44011 1.37749 1.02117 1.47278 1.20964 0.97613 0.86953 0.92846 1.21916 0.97509 0.98825 0.98421 1.21726 0.98713 0.96376 0.99039 1.21210 0.83356 0.96693 0.91871 1.22605 0.97020 0.86052 0.95320 1.86558 1.53079 1.34781 1.61954 1.45835 1.31190 1.24579 1.31660 1.20343 0.85803 0.83590 0.80203 1.90577 1.59968 1.27315 1.66163 1.21684 0.97265 1.00596 0.98335 1.19765 0.91320 0.99350 0.95983 1.26135 1.00566 1.04838 1.01060 1.21804 0.86723 1.02703 1.01084 1.66314 1.36945 1.10363 1.04676 1.28340 0.97165 1.02013 1.01342 1.84136 1.07008 1.45686 1.26059 1.20969 0.89477 0.97960 0.86596 0.93495 0.96535 0.92878 0.93184 0.92502 0.92098 0.91078 0.93958 0.92285 0.78796 0.75648 0.89105 0.88712 0.88816 0.89762 0.80689 0.78645 0.88332 0.95154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.04 11.33 55.49 0.63 -24.41 16 2 C 0.01 0.24 4.90 -17.43 -0.09 0.16 16 3 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.73 9.56 -15.06 -0.14 -6.88 16 8 H 0.07 1.66 7.88 -52.48 -0.41 1.25 16 9 N -0.59 -13.80 2.90 -172.33 -0.50 -14.30 16 10 C 0.14 2.89 6.51 -3.71 -0.02 2.86 16 11 C -0.13 -2.21 5.93 -26.61 -0.16 -2.37 16 12 C -0.12 -2.09 4.44 -26.68 -0.12 -2.21 16 13 C 0.16 2.91 0.45 -131.70 -0.06 2.85 16 14 C 0.07 1.19 5.66 37.16 0.21 1.40 16 15 O -0.56 -9.58 13.08 -35.23 -0.46 -10.04 16 16 N -0.68 -11.92 3.94 -47.49 -0.19 -12.11 16 17 C 0.51 8.09 7.19 -10.98 -0.08 8.01 16 18 O -0.56 -9.80 12.30 5.56 0.07 -9.73 16 19 C -0.14 -1.68 5.68 -27.88 -0.16 -1.84 16 20 C -0.02 -0.26 5.04 -27.88 -0.14 -0.40 16 21 C -0.20 -2.16 5.85 -35.92 -0.21 -2.37 16 22 C 0.03 0.30 11.25 -19.19 -0.22 0.08 16 23 N -0.47 -5.48 10.54 -15.75 -0.17 -5.65 16 24 C 0.01 0.08 12.23 51.58 0.63 0.71 16 25 S 0.12 1.08 23.22 -107.50 -2.50 -1.41 16 26 C 0.18 3.98 3.84 -3.71 -0.01 3.97 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.01 7.48 -51.93 -0.39 0.62 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.25 6.24 -51.93 -0.32 0.93 16 34 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 36 H 0.37 4.47 9.12 45.56 0.42 4.89 16 37 H 0.41 7.54 8.48 -40.82 -0.35 7.19 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.10 2.54 6.06 -51.93 -0.31 2.23 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -30.97 373.92 -8.97 -39.93 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.89 Total: 12.28 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.57 Total: 3.96 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.22 Total: -56.47 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.39 Total: -19.76 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.50 Total: -1.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.97 -8.97 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733587824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.990 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds