Wall clock time and date at job start Tue Mar 31 2020 22:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00264 * 2 1 4 4 H 1.48491 * 109.47045 * 269.99853 * 3 2 1 5 5 H 1.48505 * 109.46793 * 29.99743 * 3 2 1 6 6 H 1.48497 * 109.47127 * 149.99483 * 3 2 1 7 7 C 1.38809 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99910 * 196.70916 * 7 2 1 9 9 N 1.36941 * 120.00204 * 16.71268 * 7 2 1 10 10 C 1.46928 * 120.63239 * 209.99721 * 9 7 2 11 11 C 1.53187 * 108.77785 * 233.63247 * 10 9 7 12 12 C 1.53047 * 109.31053 * 305.36358 * 11 10 9 13 13 C 1.53044 * 109.53484 * 61.36551 * 12 11 10 14 14 C 1.53005 * 109.49670 * 178.68027 * 13 12 11 15 15 O 1.42896 * 109.47475 * 185.45994 * 14 13 12 16 16 N 1.46500 * 109.49806 * 58.62014 * 13 12 11 17 17 C 1.34782 * 120.00194 * 57.98169 * 16 13 12 18 18 O 1.21281 * 119.99669 * 5.09958 * 17 16 13 19 19 C 1.50699 * 119.99779 * 185.10286 * 17 16 13 20 20 C 1.53006 * 109.46720 * 179.97438 * 19 17 16 21 21 C 1.50693 * 109.46915 * 179.97438 * 20 19 17 22 22 C 1.33645 * 126.03828 * 90.00331 * 21 20 19 23 23 N 1.31774 * 114.50282 * 179.97438 * 22 21 20 24 24 C 1.29026 * 117.12550 * 0.02562 * 23 22 21 25 25 S 1.70975 * 110.16895 * 359.72627 * 24 23 22 26 26 C 1.46922 * 120.62829 * 30.02033 * 9 7 2 27 27 H 0.97005 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.58467 * 113.83991 * 10 9 7 29 29 H 1.08999 * 109.70046 * 353.48677 * 10 9 7 30 30 H 1.08992 * 109.50140 * 185.41649 * 11 10 9 31 31 H 1.08999 * 109.50294 * 65.31196 * 11 10 9 32 32 H 1.08994 * 109.46114 * 301.34335 * 12 11 10 33 33 H 1.08997 * 109.45871 * 181.37953 * 12 11 10 34 34 H 1.09009 * 109.46750 * 65.45741 * 14 13 12 35 35 H 1.08996 * 109.47479 * 305.46679 * 14 13 12 36 36 H 0.96697 * 113.99910 * 180.02562 * 15 14 13 37 37 H 0.96995 * 120.00281 * 237.97967 * 16 13 12 38 38 H 1.08999 * 109.47075 * 299.99455 * 19 17 16 39 39 H 1.08996 * 109.47117 * 60.00009 * 19 17 16 40 40 H 1.09000 * 109.47390 * 300.00306 * 20 19 17 41 41 H 1.09005 * 109.46955 * 60.00115 * 20 19 17 42 42 H 1.07998 * 122.74443 * 0.02562 * 22 21 20 43 43 H 1.08001 * 124.91634 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.58672 * 6.58373 * 26 9 7 45 45 H 1.08998 * 109.58901 * 246.15299 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0560 -1.2218 0.2695 9 7 1.3688 -2.3632 -0.3400 10 6 1.7890 -3.6475 0.2370 11 6 2.0631 -4.6338 -0.9026 12 6 0.8286 -4.7230 -1.8027 13 6 0.5392 -3.3493 -2.4121 14 6 -0.6753 -3.4467 -3.3375 15 8 -0.8683 -2.1972 -4.0034 16 7 1.7035 -2.8995 -3.1791 17 6 2.1723 -3.6507 -4.1953 18 8 1.5768 -4.6513 -4.5345 19 6 3.4364 -3.2474 -4.9097 20 6 3.7452 -4.2626 -6.0120 21 6 5.0089 -3.8589 -6.7268 22 6 6.2502 -4.2311 -6.4001 23 7 7.1910 -3.7436 -7.1835 24 6 6.8126 -2.9805 -8.1526 25 16 5.1105 -2.8188 -8.1455 26 6 0.2478 -2.3483 -1.2896 27 1 -0.4850 0.8401 -0.0004 28 1 0.9966 -4.0378 0.8755 29 1 2.6961 -3.5070 0.8248 30 1 2.2824 -5.6175 -0.4875 31 1 2.9152 -4.2869 -1.4871 32 1 -0.0287 -5.0463 -1.2124 33 1 1.0122 -5.4427 -2.6005 34 1 -1.5617 -3.6859 -2.7497 35 1 -0.5072 -4.2301 -4.0765 36 1 -1.6232 -2.1860 -4.6076 37 1 2.1370 -2.0610 -2.9558 38 1 3.3047 -2.2597 -5.3515 39 1 4.2625 -3.2205 -4.1992 40 1 3.8770 -5.2502 -5.5699 41 1 2.9191 -4.2899 -6.7226 42 1 6.4646 -4.8790 -5.5631 43 1 7.4747 -2.5147 -8.8675 44 1 0.1388 -1.3488 -1.7105 45 1 -0.6703 -2.6329 -0.7756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733587824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:49 Heat of formation + Delta-G solvation = -45.746064 kcal Electronic energy + Delta-G solvation = -28307.552201 eV Core-core repulsion = 24451.411588 eV Total energy + Delta-G solvation = -3856.140613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41529 -40.54816 -39.00655 -37.35435 -35.45106 -35.02112 -34.16057 -32.08633 -31.53648 -30.02486 -27.30806 -26.81498 -26.61521 -24.46413 -23.96040 -22.34617 -21.38674 -20.90364 -20.08835 -19.00521 -18.78656 -18.18263 -17.98032 -16.97386 -16.73075 -16.33993 -16.16570 -15.79498 -15.58340 -15.23329 -15.13796 -14.89065 -14.76523 -14.70289 -14.31908 -14.09207 -13.76467 -13.66253 -13.44039 -13.12425 -12.98897 -12.84686 -12.75501 -12.61579 -12.50390 -12.21087 -11.96601 -11.83396 -11.66980 -11.47126 -11.19631 -11.04255 -10.60113 -10.53300 -10.40639 -10.14666 -9.84857 -9.74471 -8.63728 -7.85245 -5.32522 -0.22936 0.44382 0.82956 1.48870 1.51055 1.58569 1.82205 1.87400 2.41375 2.52723 3.29579 3.36940 3.47885 3.66589 3.73562 4.00360 4.07394 4.10278 4.12707 4.26717 4.36907 4.38905 4.42899 4.50128 4.51558 4.63282 4.69298 4.82971 4.85935 4.96910 4.99146 5.01998 5.08744 5.14165 5.22183 5.23516 5.34049 5.50410 5.64181 5.73923 5.81389 6.41840 6.75832 6.82653 6.94330 7.16426 7.43002 7.86083 8.40566 9.20584 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.003477 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.443191 B = 8051.075773 C = 9010.632670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.039 4.039 3 Si 0.960 3.040 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.602 5.602 10 C 0.139 3.861 11 C -0.115 4.115 12 C -0.114 4.114 13 C 0.161 3.839 14 C 0.075 3.925 15 O -0.579 6.579 16 N -0.689 5.689 17 C 0.516 3.484 18 O -0.576 6.576 19 C -0.129 4.129 20 C -0.013 4.013 21 C -0.219 4.219 22 C 0.020 3.980 23 N -0.503 5.503 24 C 0.014 3.986 25 S 0.141 5.859 26 C 0.193 3.807 27 H 0.249 0.751 28 H 0.012 0.988 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.388 0.612 37 H 0.402 0.598 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.183 0.817 43 H 0.227 0.773 44 H 0.064 0.936 45 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 -7.698 -15.488 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.788 3.212 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.325 5.325 10 C 0.014 3.986 11 C -0.154 4.154 12 C -0.153 4.153 13 C 0.072 3.928 14 C -0.004 4.004 15 O -0.385 6.385 16 N -0.338 5.338 17 C 0.304 3.696 18 O -0.457 6.457 19 C -0.170 4.170 20 C -0.053 4.053 21 C -0.341 4.341 22 C -0.130 4.130 23 N -0.216 5.216 24 C -0.282 4.282 25 S 0.394 5.606 26 C 0.067 3.933 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.236 0.764 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.200 0.800 43 H 0.243 0.757 44 H 0.082 0.918 45 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 7.041 -7.667 -15.897 19.002 hybrid contribution -0.127 0.819 0.919 1.237 sum 6.914 -6.848 -14.978 17.862 Atomic orbital electron populations 1.70165 1.06666 1.25780 1.54795 1.25745 0.95793 1.01213 1.00845 0.85390 0.78129 0.80036 0.77609 1.21005 1.22735 1.19441 1.19415 0.92624 0.85519 1.41598 0.91513 1.44209 1.37658 1.02697 1.47932 1.21088 0.97338 0.86247 0.93938 1.21787 0.97273 0.99187 0.97153 1.21684 0.98915 0.95565 0.99106 1.20993 0.84724 0.95920 0.91133 1.22511 0.96592 0.86117 0.95171 1.86510 1.54518 1.34855 1.62641 1.45836 1.30986 1.24644 1.32284 1.20840 0.86429 0.82910 0.79461 1.90565 1.60718 1.27968 1.66446 1.21651 0.95486 1.01250 0.98569 1.19605 0.91454 0.98864 0.95423 1.26053 1.00090 1.05877 1.02047 1.21998 0.86879 1.02765 1.01353 1.66363 1.37610 1.11811 1.05851 1.28912 0.97805 1.00705 1.00819 1.84067 1.06772 1.44773 1.24993 1.20596 0.88280 0.97149 0.87295 0.94220 0.97004 0.92712 0.90466 0.92699 0.91778 0.90588 0.93417 0.91918 0.76403 0.76360 0.88315 0.87724 0.88997 0.90272 0.79992 0.75673 0.91753 0.97977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.28 11.33 21.65 0.25 -53.03 16 2 C -0.04 -2.11 4.90 84.86 0.42 -1.69 16 3 Si 0.96 43.23 29.59 68.60 2.03 45.26 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.26 -13.51 9.56 84.03 0.80 -12.71 16 8 H 0.07 3.38 7.88 -2.91 -0.02 3.35 16 9 N -0.60 -28.37 2.90 -699.12 -2.03 -30.39 16 10 C 0.14 5.55 6.51 86.36 0.56 6.11 16 11 C -0.12 -3.78 5.93 30.67 0.18 -3.60 16 12 C -0.11 -3.83 4.44 30.62 0.14 -3.69 16 13 C 0.16 5.90 0.45 3.68 0.00 5.90 16 14 C 0.08 2.53 5.66 71.98 0.41 2.94 16 15 O -0.58 -19.57 13.08 -148.98 -1.95 -21.52 16 16 N -0.69 -23.54 3.94 -422.55 -1.67 -25.21 16 17 C 0.52 15.50 7.19 87.66 0.63 16.13 16 18 O -0.58 -19.25 12.30 -3.03 -0.04 -19.29 16 19 C -0.13 -2.93 5.68 29.85 0.17 -2.76 16 20 C -0.01 -0.27 5.04 29.85 0.15 -0.12 16 21 C -0.22 -4.25 5.85 24.64 0.14 -4.10 16 22 C 0.02 0.42 11.25 83.66 0.94 1.36 16 23 N -0.50 -10.87 10.54 -203.75 -2.15 -13.01 16 24 C 0.01 0.23 12.23 130.65 1.60 1.83 16 25 S 0.14 2.27 23.22 -56.49 -1.31 0.96 16 26 C 0.19 8.89 3.84 86.36 0.33 9.22 16 27 H 0.25 14.00 8.31 -92.70 -0.77 13.22 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 2.13 7.94 -2.39 -0.02 2.12 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.84 7.48 -2.39 -0.02 1.82 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.53 6.24 -2.39 -0.01 2.51 16 34 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.06 2.08 6.33 -2.39 -0.02 2.07 16 36 H 0.39 9.14 9.12 -74.06 -0.68 8.46 16 37 H 0.40 14.73 8.48 -92.71 -0.79 13.95 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 41 H 0.08 1.70 8.10 -2.38 -0.02 1.68 16 42 H 0.18 3.23 8.06 -2.91 -0.02 3.20 16 43 H 0.23 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.06 3.42 6.06 -2.39 -0.01 3.41 16 45 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -66.32 373.92 -0.83 -67.15 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.44 Total: 34.27 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.47 Total: 14.82 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -5.59 Total: -121.65 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.99 Total: -40.81 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -66.32 -0.83 -67.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733587824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.401 kcal (2) G-P(sol) polarization free energy of solvation -66.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds