Wall clock time and date at job start Tue Mar 31 2020 22:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47287 * 239.99670 * 3 2 1 5 5 H 1.48503 * 109.47429 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47303 * 119.99769 * 3 2 1 7 7 C 1.38811 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00234 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.46491 * 119.99927 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47374 * 174.82477 * 10 9 7 12 12 N 1.46497 * 109.54249 * 58.69925 * 11 10 9 13 13 C 1.34783 * 119.99728 * 56.85131 * 12 11 10 14 14 O 1.21279 * 119.99999 * 4.60933 * 13 12 11 15 15 C 1.50700 * 119.99875 * 184.60216 * 13 12 11 16 16 C 1.53002 * 109.46872 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47251 * 180.02562 * 16 15 13 18 18 C 1.33635 * 122.74821 * 125.00070 * 17 16 15 19 19 S 1.76205 * 107.92444 * 180.02562 * 18 17 16 20 20 C 1.70978 * 90.28063 * 0.02562 * 19 18 17 21 21 N 1.29026 * 110.16752 * 359.73158 * 20 19 18 22 22 C 1.53175 * 109.54646 * 178.87969 * 11 10 9 23 23 C 1.53281 * 109.06194 * 176.84857 * 22 11 10 24 24 O 1.42897 * 109.46559 * 302.44642 * 23 22 11 25 25 C 1.42909 * 114.09731 * 61.15824 * 24 23 22 26 26 C 1.53094 * 109.41074 * 298.84264 * 25 24 23 27 27 H 0.97007 * 119.99762 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99709 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47410 * 54.82397 * 10 9 7 30 30 H 1.09001 * 109.47518 * 294.82662 * 10 9 7 31 31 H 0.96996 * 120.00783 * 237.12838 * 12 11 10 32 32 H 1.08997 * 109.47385 * 300.00324 * 15 13 12 33 33 H 1.09004 * 109.46869 * 60.00571 * 15 13 12 34 34 H 1.08997 * 109.47322 * 300.00291 * 16 15 13 35 35 H 1.09004 * 109.46966 * 60.00559 * 16 15 13 36 36 H 1.08003 * 126.04058 * 0.02562 * 18 17 16 37 37 H 1.08003 * 124.91553 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.52254 * 296.84652 * 22 11 10 39 39 H 1.09005 * 109.52234 * 57.03295 * 22 11 10 40 40 H 1.09004 * 109.45647 * 182.44761 * 23 22 11 41 41 H 1.09005 * 109.46471 * 62.45270 * 23 22 11 42 42 H 1.08999 * 109.48154 * 178.85666 * 25 24 23 43 43 H 1.09005 * 109.48710 * 58.82782 * 25 24 23 44 44 H 1.08999 * 109.52366 * 297.69623 * 26 25 24 45 45 H 1.09008 * 109.56975 * 177.54640 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0689 -4.8167 0.1330 12 7 0.1147 -4.7754 -0.9779 13 6 0.5598 -4.8028 -2.2498 14 8 1.7428 -4.9459 -2.4754 15 6 -0.4127 -4.6559 -3.3917 16 6 0.3456 -4.7220 -4.7189 17 6 -0.6267 -4.5744 -5.8608 18 6 -0.4923 -3.6422 -6.8088 19 16 -1.8327 -3.8205 -7.9386 20 6 -2.4409 -5.1304 -7.0233 21 7 -1.6769 -5.3567 -6.0086 22 6 1.8306 -6.1453 0.1051 23 6 0.8394 -7.2952 0.3164 24 8 0.1499 -7.1082 1.5540 25 6 -0.6167 -5.9038 1.6186 26 6 0.3146 -4.6990 1.4610 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0016 29 1 2.7530 -3.6751 0.8411 30 1 2.6125 -3.7562 -0.9315 31 1 -0.8371 -4.7242 -0.7982 32 1 -1.1449 -5.4623 -3.3514 33 1 -0.9240 -3.6965 -3.3122 34 1 1.0780 -3.9158 -4.7594 35 1 0.8566 -5.6816 -4.7981 36 1 0.2982 -2.9090 -6.8715 37 1 -3.3328 -5.6905 -7.2628 38 1 2.3260 -6.2610 -0.8589 39 1 2.5747 -6.1554 0.9016 40 1 1.3805 -8.2412 0.3411 41 1 0.1197 -7.3095 -0.5022 42 1 -1.1245 -5.8474 2.5814 43 1 -1.3555 -5.8996 0.8171 44 1 1.0280 -4.6798 2.2848 45 1 -0.2726 -3.7805 1.4663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733832821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:22 Heat of formation + Delta-G solvation = -27.537142 kcal Electronic energy + Delta-G solvation = -28014.531278 eV Core-core repulsion = 24159.180263 eV Total energy + Delta-G solvation = -3855.351015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50629 -39.94918 -38.31387 -35.77801 -33.64147 -33.41596 -31.66421 -30.99756 -30.38428 -29.71526 -26.56585 -25.68772 -24.20590 -23.70816 -23.23576 -21.46759 -20.53850 -19.65901 -18.95092 -18.00605 -17.23800 -17.02845 -16.08694 -15.86585 -15.76017 -15.44189 -15.17594 -14.76075 -14.50829 -14.25621 -13.90123 -13.69750 -13.44799 -13.26733 -13.15610 -12.94022 -12.65930 -12.35517 -12.27811 -11.88575 -11.74316 -11.57981 -11.45707 -11.14403 -10.93596 -10.90478 -10.79319 -10.47248 -10.28523 -10.08523 -9.83256 -9.69455 -9.62151 -9.48839 -9.25095 -8.94225 -8.77724 -8.51516 -6.85398 -5.75254 -3.01393 0.57495 1.23889 1.57090 2.64359 3.06593 3.44841 3.49039 3.50198 3.54128 4.00054 4.06863 4.60337 4.78604 4.90423 4.98465 5.06391 5.14065 5.15521 5.17990 5.20378 5.26833 5.37779 5.49867 5.50132 5.60157 5.73142 5.79636 5.84697 5.92939 5.98927 6.07651 6.11530 6.15545 6.22080 6.29974 6.36081 6.52933 6.55809 6.90164 7.12035 7.30608 7.56216 7.72735 7.90560 8.44458 8.64917 9.55918 10.13806 10.49801 11.47891 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007433 B = 0.003993 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3765.901775 B = 7010.397801 C = 9949.759923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.726 5.726 10 C 0.142 3.858 11 C 0.175 3.825 12 N -0.716 5.716 13 C 0.526 3.474 14 O -0.536 6.536 15 C -0.133 4.133 16 C -0.026 4.026 17 C 0.069 3.931 18 C -0.248 4.248 19 S 0.106 5.894 20 C 0.020 3.980 21 N -0.465 5.465 22 C -0.163 4.163 23 C 0.066 3.934 24 O -0.386 6.386 25 C 0.061 3.939 26 C -0.154 4.154 27 H 0.254 0.746 28 H 0.381 0.619 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.395 0.605 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -13.722 -10.358 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.370 5.370 10 C 0.014 3.986 11 C 0.089 3.911 12 N -0.367 5.367 13 C 0.312 3.688 14 O -0.413 6.413 15 C -0.173 4.173 16 C -0.066 4.066 17 C -0.062 4.062 18 C -0.387 4.387 19 S 0.357 5.643 20 C -0.278 4.278 21 N -0.179 5.179 22 C -0.202 4.202 23 C -0.010 4.010 24 O -0.305 6.305 25 C -0.016 4.016 26 C -0.192 4.192 27 H 0.063 0.937 28 H 0.215 0.785 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.229 0.771 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.197 0.803 37 H 0.215 0.785 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.748 -13.759 -10.921 18.483 hybrid contribution 0.120 1.337 0.496 1.431 sum -5.628 -12.422 -10.425 17.166 Atomic orbital electron populations 1.69632 1.05017 1.25544 1.58438 1.24661 0.95494 0.97455 1.03396 0.86291 0.78527 0.83693 0.77845 1.21404 1.21777 1.21348 1.19191 0.90998 0.84202 1.41877 0.91432 1.42211 1.05579 0.99695 1.89506 1.21085 0.93105 0.84908 0.99545 1.20567 0.89845 0.95458 0.85217 1.45984 1.09817 1.75441 1.05480 1.20367 0.89350 0.75351 0.83706 1.90618 1.17293 1.48847 1.84588 1.21549 0.98547 1.04722 0.92493 1.19908 0.94123 1.04523 0.88064 1.20440 0.94987 0.92607 0.98187 1.26948 1.05027 1.06964 0.99737 1.84024 1.19601 1.31256 1.29378 1.28385 1.03972 1.00564 0.94923 1.66122 1.04635 1.27222 1.19874 1.22584 0.98878 0.94274 1.04445 1.22534 0.94198 0.98180 0.86129 1.87890 1.64994 1.40904 1.36740 1.22609 0.92860 0.84283 1.01822 1.22418 1.00352 0.99349 0.97063 0.93659 0.78470 0.95742 0.93698 0.77098 0.88730 0.88740 0.89149 0.89493 0.80309 0.78508 0.88717 0.90567 0.89392 0.93475 0.88888 0.93572 0.89645 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.81 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.06 5.15 -59.91 -0.31 -18.37 16 10 C 0.14 2.98 4.90 -4.05 -0.02 2.96 16 11 C 0.18 2.85 0.32 -131.64 -0.04 2.81 16 12 N -0.72 -10.79 3.81 -47.44 -0.18 -10.97 16 13 C 0.53 8.46 7.24 -10.98 -0.08 8.38 16 14 O -0.54 -10.14 12.23 5.56 0.07 -10.07 16 15 C -0.13 -1.79 5.60 -27.88 -0.16 -1.94 16 16 C -0.03 -0.34 5.00 -27.88 -0.14 -0.48 16 17 C 0.07 0.85 6.07 -84.23 -0.51 0.34 16 18 C -0.25 -2.72 11.07 29.12 0.32 -2.39 16 19 S 0.11 0.92 23.22 -107.50 -2.50 -1.58 16 20 C 0.02 0.18 12.23 51.58 0.63 0.82 16 21 N -0.46 -5.62 10.35 -11.90 -0.12 -5.74 16 22 C -0.16 -2.40 4.82 -26.50 -0.13 -2.53 16 23 C 0.07 0.86 6.68 37.30 0.25 1.11 16 24 O -0.39 -5.38 10.77 -35.23 -0.38 -5.76 16 25 C 0.06 0.77 6.67 37.21 0.25 1.02 16 26 C -0.15 -2.32 4.77 -26.59 -0.13 -2.44 16 27 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.38 9.70 6.53 -40.82 -0.27 9.44 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.05 6.15 -51.93 -0.32 0.73 16 31 H 0.40 5.19 7.44 -40.82 -0.30 4.89 16 32 H 0.09 1.13 8.08 -51.93 -0.42 0.72 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.27 7.98 -51.93 -0.41 0.85 16 35 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.09 1.52 6.21 -51.93 -0.32 1.20 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.53 7.04 -51.93 -0.37 0.16 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.09 1.53 7.17 -51.92 -0.37 1.16 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -33.21 373.88 -8.62 -41.83 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.53 Total: 14.06 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 0.00 Total: 0.46 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 0.11 Total: -62.16 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.31 Total: -15.83 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.21 -8.62 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733832821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.288 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds