Wall clock time and date at job start Tue Mar 31 2020 22:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47287 * 239.99670 * 3 2 1 5 5 H 1.48503 * 109.47429 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47303 * 119.99769 * 3 2 1 7 7 C 1.38811 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00234 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.46491 * 119.99927 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47374 * 174.82477 * 10 9 7 12 12 N 1.46497 * 109.54249 * 58.69925 * 11 10 9 13 13 C 1.34783 * 119.99728 * 56.85131 * 12 11 10 14 14 O 1.21279 * 119.99999 * 4.60933 * 13 12 11 15 15 C 1.50700 * 119.99875 * 184.60216 * 13 12 11 16 16 C 1.53002 * 109.46872 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47251 * 180.02562 * 16 15 13 18 18 C 1.33635 * 122.74821 * 125.00070 * 17 16 15 19 19 S 1.76205 * 107.92444 * 180.02562 * 18 17 16 20 20 C 1.70978 * 90.28063 * 0.02562 * 19 18 17 21 21 N 1.29026 * 110.16752 * 359.73158 * 20 19 18 22 22 C 1.53175 * 109.54646 * 178.87969 * 11 10 9 23 23 C 1.53281 * 109.06194 * 176.84857 * 22 11 10 24 24 O 1.42897 * 109.46559 * 302.44642 * 23 22 11 25 25 C 1.42909 * 114.09731 * 61.15824 * 24 23 22 26 26 C 1.53094 * 109.41074 * 298.84264 * 25 24 23 27 27 H 0.97007 * 119.99762 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99709 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47410 * 54.82397 * 10 9 7 30 30 H 1.09001 * 109.47518 * 294.82662 * 10 9 7 31 31 H 0.96996 * 120.00783 * 237.12838 * 12 11 10 32 32 H 1.08997 * 109.47385 * 300.00324 * 15 13 12 33 33 H 1.09004 * 109.46869 * 60.00571 * 15 13 12 34 34 H 1.08997 * 109.47322 * 300.00291 * 16 15 13 35 35 H 1.09004 * 109.46966 * 60.00559 * 16 15 13 36 36 H 1.08003 * 126.04058 * 0.02562 * 18 17 16 37 37 H 1.08003 * 124.91553 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.52254 * 296.84652 * 22 11 10 39 39 H 1.09005 * 109.52234 * 57.03295 * 22 11 10 40 40 H 1.09004 * 109.45647 * 182.44761 * 23 22 11 41 41 H 1.09005 * 109.46471 * 62.45270 * 23 22 11 42 42 H 1.08999 * 109.48154 * 178.85666 * 25 24 23 43 43 H 1.09005 * 109.48710 * 58.82782 * 25 24 23 44 44 H 1.08999 * 109.52366 * 297.69623 * 26 25 24 45 45 H 1.09008 * 109.56975 * 177.54640 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0689 -4.8167 0.1330 12 7 0.1147 -4.7754 -0.9779 13 6 0.5598 -4.8028 -2.2498 14 8 1.7428 -4.9459 -2.4754 15 6 -0.4127 -4.6559 -3.3917 16 6 0.3456 -4.7220 -4.7189 17 6 -0.6267 -4.5744 -5.8608 18 6 -0.4923 -3.6422 -6.8088 19 16 -1.8327 -3.8205 -7.9386 20 6 -2.4409 -5.1304 -7.0233 21 7 -1.6769 -5.3567 -6.0086 22 6 1.8306 -6.1453 0.1051 23 6 0.8394 -7.2952 0.3164 24 8 0.1499 -7.1082 1.5540 25 6 -0.6167 -5.9038 1.6186 26 6 0.3146 -4.6990 1.4610 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0016 29 1 2.7530 -3.6751 0.8411 30 1 2.6125 -3.7562 -0.9315 31 1 -0.8371 -4.7242 -0.7982 32 1 -1.1449 -5.4623 -3.3514 33 1 -0.9240 -3.6965 -3.3122 34 1 1.0780 -3.9158 -4.7594 35 1 0.8566 -5.6816 -4.7981 36 1 0.2982 -2.9090 -6.8715 37 1 -3.3328 -5.6905 -7.2628 38 1 2.3260 -6.2610 -0.8589 39 1 2.5747 -6.1554 0.9016 40 1 1.3805 -8.2412 0.3411 41 1 0.1197 -7.3095 -0.5022 42 1 -1.1245 -5.8474 2.5814 43 1 -1.3555 -5.8996 0.8171 44 1 1.0280 -4.6798 2.2848 45 1 -0.2726 -3.7805 1.4663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733832821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:21 Heat of formation + Delta-G solvation = -50.862786 kcal Electronic energy + Delta-G solvation = -28015.542754 eV Core-core repulsion = 24159.180263 eV Total energy + Delta-G solvation = -3856.362491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76847 -40.82005 -39.51284 -37.25897 -35.46142 -34.50619 -33.16444 -32.26734 -32.00687 -30.65182 -28.19872 -26.65782 -25.47875 -25.09296 -24.51308 -23.03606 -21.74403 -20.52245 -20.29289 -19.26521 -18.81712 -18.24747 -17.21444 -17.01139 -16.83982 -16.77021 -16.35970 -16.27658 -15.80419 -15.46714 -15.31853 -15.03686 -14.91264 -14.51090 -14.24385 -14.11330 -14.04657 -13.68546 -13.54486 -13.20095 -13.07081 -12.96599 -12.81133 -12.76720 -12.44820 -12.31273 -12.15288 -11.97857 -11.96223 -11.63729 -11.35395 -11.01423 -10.65950 -10.61531 -10.44532 -10.40508 -9.88197 -9.72788 -8.94972 -7.95891 -5.22045 -0.19391 0.50247 0.80417 1.44569 1.46618 1.52769 1.73383 1.81150 2.29609 2.54584 2.96797 3.28837 3.37084 3.57875 3.76962 3.85787 3.88385 3.97708 4.01941 4.16448 4.24540 4.27251 4.31449 4.43539 4.47013 4.56688 4.62372 4.73662 4.77152 4.80689 4.85623 4.87410 4.96178 5.02989 5.08559 5.13075 5.17882 5.22190 5.25872 5.46566 5.68374 6.25237 6.26467 6.65431 6.76996 7.34227 7.37511 8.07908 8.37037 9.26707 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007433 B = 0.003993 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3765.901775 B = 7010.397801 C = 9949.759923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.728 5.728 10 C 0.144 3.856 11 C 0.181 3.819 12 N -0.708 5.708 13 C 0.519 3.481 14 O -0.567 6.567 15 C -0.120 4.120 16 C -0.020 4.020 17 C 0.053 3.947 18 C -0.270 4.270 19 S 0.155 5.845 20 C 0.021 3.979 21 N -0.494 5.494 22 C -0.156 4.156 23 C 0.072 3.928 24 O -0.393 6.393 25 C 0.066 3.934 26 C -0.146 4.146 27 H 0.251 0.749 28 H 0.378 0.622 29 H 0.018 0.982 30 H 0.022 0.978 31 H 0.406 0.594 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.184 0.816 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.696 -14.525 -10.926 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.371 5.371 10 C 0.016 3.984 11 C 0.095 3.905 12 N -0.360 5.360 13 C 0.307 3.693 14 O -0.447 6.447 15 C -0.160 4.160 16 C -0.061 4.061 17 C -0.079 4.079 18 C -0.409 4.409 19 S 0.408 5.592 20 C -0.276 4.276 21 N -0.209 5.209 22 C -0.195 4.195 23 C -0.005 4.005 24 O -0.312 6.312 25 C -0.011 4.011 26 C -0.185 4.185 27 H 0.060 0.940 28 H 0.211 0.789 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.242 0.758 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.201 0.799 37 H 0.249 0.751 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.182 -14.582 -11.489 19.905 hybrid contribution 0.580 1.593 0.600 1.798 sum -6.602 -12.988 -10.889 18.190 Atomic orbital electron populations 1.69763 1.06133 1.25996 1.59351 1.25376 0.96383 1.00381 1.03643 0.85324 0.77376 0.79790 0.77938 1.21067 1.21679 1.20591 1.19493 0.91118 0.85687 1.41500 0.91919 1.42253 1.05435 1.00212 1.89221 1.21100 0.94009 0.85380 0.97875 1.20396 0.89478 0.94283 0.86362 1.45920 1.10261 1.74869 1.04999 1.20875 0.89366 0.74589 0.84437 1.90607 1.18761 1.50248 1.85072 1.21468 0.98056 1.04952 0.91512 1.19745 0.94170 1.03509 0.88645 1.20298 0.95501 0.93676 0.98397 1.27164 1.06336 1.06890 1.00484 1.83845 1.17561 1.30195 1.27638 1.29009 1.04197 1.00520 0.93904 1.66114 1.05188 1.28027 1.21529 1.22506 0.99231 0.94120 1.03661 1.22562 0.93867 0.97927 0.86127 1.87897 1.65110 1.41048 1.37106 1.22670 0.92247 0.82526 1.03640 1.22327 1.00316 1.00040 0.95794 0.93978 0.78902 0.96375 0.96056 0.75762 0.86771 0.89395 0.90873 0.90053 0.79911 0.75140 0.90145 0.90592 0.87403 0.92820 0.86939 0.91891 0.90393 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.52 13.06 21.65 0.28 -57.24 16 2 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 8 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 9 N -0.73 -37.12 5.15 -343.46 -1.77 -38.89 16 10 C 0.14 6.25 4.90 86.38 0.42 6.67 16 11 C 0.18 5.92 0.32 3.72 0.00 5.93 16 12 N -0.71 -21.30 3.81 -422.38 -1.61 -22.91 16 13 C 0.52 17.00 7.24 87.66 0.63 17.63 16 14 O -0.57 -22.23 12.23 -3.03 -0.04 -22.26 16 15 C -0.12 -3.24 5.60 29.85 0.17 -3.08 16 16 C -0.02 -0.55 5.00 29.85 0.15 -0.40 16 17 C 0.05 1.29 6.07 41.52 0.25 1.55 16 18 C -0.27 -5.80 11.07 66.77 0.74 -5.06 16 19 S 0.15 2.39 23.22 -56.49 -1.31 1.08 16 20 C 0.02 0.35 12.23 130.65 1.60 1.94 16 21 N -0.49 -11.34 10.35 -191.55 -1.98 -13.32 16 22 C -0.16 -4.55 4.82 30.75 0.15 -4.40 16 23 C 0.07 1.72 6.68 72.08 0.48 2.20 16 24 O -0.39 -9.98 10.77 -148.98 -1.60 -11.59 16 25 C 0.07 1.52 6.67 72.01 0.48 2.00 16 26 C -0.15 -4.34 4.77 30.69 0.15 -4.20 16 27 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 28 H 0.38 19.63 6.53 -92.71 -0.61 19.02 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.02 1.05 6.15 -2.39 -0.01 1.03 16 31 H 0.41 10.33 7.44 -92.71 -0.69 9.64 16 32 H 0.11 2.63 8.08 -2.39 -0.02 2.62 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.07 2.18 7.98 -2.39 -0.02 2.17 16 35 H 0.08 2.25 8.10 -2.39 -0.02 2.23 16 36 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.23 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.08 2.62 6.21 -2.39 -0.01 2.60 16 39 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.11 2.18 8.14 -2.38 -0.02 2.17 16 41 H 0.05 1.23 7.75 -2.38 -0.02 1.21 16 42 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 1.27 7.04 -2.38 -0.02 1.25 16 44 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 2.46 7.17 -2.38 -0.02 2.44 16 Total: -1.00 -71.62 373.88 0.25 -71.37 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.27 Total: 40.77 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.53 Total: 4.25 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -5.08 Total: -132.36 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.64 Total: -33.85 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.31 Total: 1.08 kcal Total: -71.62 0.25 -71.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733832821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.504 kcal (2) G-P(sol) polarization free energy of solvation -71.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds