Wall clock time and date at job start Tue Mar 31 2020 23:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70443 * 124.59018 * 2 1 4 4 C 1.75502 * 92.44293 * 179.74002 * 3 2 1 5 5 C 1.32766 * 110.57968 * 359.97438 * 4 3 2 6 6 C 1.36009 * 124.58801 * 179.70336 * 2 1 3 7 7 C 1.47186 * 123.46406 * 0.22285 * 6 2 1 8 8 O 1.21633 * 119.99892 * 320.30816 * 7 6 2 9 9 N 1.34781 * 119.99671 * 140.30229 * 7 6 2 10 10 C 1.46497 * 120.00074 * 4.58821 * 9 7 6 11 11 C 1.46501 * 119.99548 * 184.58982 * 9 7 6 12 12 C 1.53003 * 109.47199 * 90.00293 * 11 9 7 13 13 H 1.09000 * 109.46884 * 64.99434 * 12 11 9 14 14 C 1.52995 * 109.47140 * 184.99668 * 12 11 9 15 15 N 1.46900 * 109.46874 * 304.99832 * 12 11 9 16 16 C 1.46899 * 110.99993 * 154.99847 * 15 12 11 17 17 C 1.50701 * 109.47386 * 179.97438 * 16 15 12 18 18 O 1.21296 * 119.99592 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00421 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00035 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00386 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99577 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99532 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47484 * 90.00245 * 24 22 20 26 26 H 1.48500 * 109.46889 * 210.00339 * 24 22 20 27 27 H 1.48505 * 109.47243 * 329.99689 * 24 22 20 28 28 H 1.09004 * 109.47211 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47805 * 120.02588 * 1 2 3 30 30 H 1.09008 * 109.46911 * 240.02452 * 1 2 3 31 31 H 1.08005 * 124.70753 * 180.02562 * 4 3 2 32 32 H 1.07998 * 123.46337 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47113 * 84.44493 * 10 9 7 34 34 H 1.08995 * 109.46934 * 204.43709 * 10 9 7 35 35 H 1.09000 * 109.47312 * 324.44447 * 10 9 7 36 36 H 1.08998 * 109.46994 * 209.99674 * 11 9 7 37 37 H 1.09001 * 109.47486 * 330.00315 * 11 9 7 38 38 H 1.09002 * 109.47317 * 179.97438 * 14 12 11 39 39 H 1.08993 * 109.47535 * 300.00202 * 14 12 11 40 40 H 1.09007 * 109.47234 * 60.00439 * 14 12 11 41 41 H 1.00896 * 111.00118 * 31.04537 * 15 12 11 42 42 H 1.08993 * 109.47443 * 300.00172 * 16 15 12 43 43 H 1.09001 * 109.47025 * 59.99969 * 16 15 12 44 44 H 0.97001 * 119.99731 * 0.02562 * 19 17 16 45 45 H 0.97002 * 119.99920 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9606 0.4693 0.0080 5 6 3.6943 -0.8314 0.0109 6 6 2.2791 -1.1197 0.0058 7 6 1.7290 -2.4849 0.0081 8 8 0.7477 -2.7440 0.6785 9 7 2.3126 -3.4478 -0.7328 10 6 3.5514 -3.1622 -1.4606 11 6 1.7078 -4.7799 -0.8102 12 6 0.7277 -4.8277 -1.9841 13 1 1.2743 -4.7043 -2.9190 14 6 0.0046 -6.1760 -1.9901 15 7 -0.2556 -3.7452 -1.8453 16 6 -0.8126 -3.3693 -3.1515 17 6 -1.8155 -2.2593 -2.9694 18 8 -2.0435 -1.8239 -1.8605 19 7 -2.4584 -1.7497 -4.0387 20 6 -3.3711 -0.7403 -3.8729 21 1 -3.5747 -0.3531 -2.8855 22 6 -4.0343 -0.2153 -4.9754 23 7 -3.7870 -0.6867 -6.1768 24 14 -5.2774 1.1606 -4.7495 25 1 -4.5884 2.4721 -4.8516 26 1 -6.3185 1.0651 -5.8042 27 1 -5.9139 1.0384 -3.4134 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5142 -0.8897 30 1 -0.3633 -0.5135 0.8903 31 1 4.9537 0.8939 0.0110 32 1 4.4576 -1.5954 0.0162 33 1 4.4033 -3.2931 -0.7933 34 1 3.6428 -3.8459 -2.3046 35 1 3.5301 -2.1353 -1.8254 36 1 2.4890 -5.5254 -0.9586 37 1 1.1750 -4.9915 0.1169 38 1 -0.6940 -6.2099 -2.8262 39 1 0.7342 -6.9791 -2.0931 40 1 -0.5421 -6.2993 -1.0552 41 1 0.1495 -2.9460 -1.3814 42 1 -0.0091 -3.0299 -3.8051 43 1 -1.3045 -4.2330 -3.5989 44 1 -2.2758 -2.0977 -4.9256 45 1 -4.2502 -0.3205 -6.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734326022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:24 Heat of formation + Delta-G solvation = -29.193502 kcal Electronic energy + Delta-G solvation = -28302.056598 eV Core-core repulsion = 24446.633758 eV Total energy + Delta-G solvation = -3855.422840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.41378 -38.25773 -37.32141 -36.35357 -34.88656 -33.80391 -31.85041 -31.28429 -30.83605 -27.94980 -27.34613 -26.30428 -25.48805 -23.97947 -23.25988 -21.15434 -20.16901 -19.27342 -18.73071 -17.84095 -17.22428 -16.57962 -16.38836 -16.19516 -15.48495 -15.03809 -14.79281 -14.58802 -14.36003 -13.83748 -13.78152 -13.64664 -13.32774 -13.20317 -12.84794 -12.77527 -12.53431 -12.42731 -12.21363 -11.99352 -11.87898 -11.75941 -11.59189 -11.42814 -11.40638 -11.31854 -11.07281 -11.00419 -10.79962 -10.36674 -10.17661 -9.73065 -9.45163 -8.79387 -8.68808 -8.45309 -8.31688 -7.93168 -7.87091 -6.37469 -3.77594 0.87890 1.48473 1.86605 2.02025 2.93898 3.20045 3.22582 3.28488 3.34872 3.96980 4.15350 4.39317 4.59574 4.74735 4.89449 4.90375 5.02878 5.12686 5.20576 5.29104 5.33824 5.37037 5.38161 5.48184 5.51833 5.61788 5.79837 5.82469 5.87700 5.91314 5.98381 6.05771 6.09815 6.13522 6.26686 6.28994 6.38064 6.52197 6.67728 7.28031 7.40851 7.59205 7.86897 8.11629 8.24351 8.67467 9.23043 9.59976 10.12445 10.80551 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.004096 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.083126 B = 6835.063175 C = 8929.152055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.126 4.126 3 S 0.176 5.824 4 C -0.247 4.247 5 C -0.105 4.105 6 C -0.187 4.187 7 C 0.576 3.424 8 O -0.502 6.502 9 N -0.621 5.621 10 C 0.077 3.923 11 C 0.113 3.887 12 C 0.066 3.934 13 H 0.039 0.961 14 C -0.137 4.137 15 N -0.658 5.658 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.573 6.573 19 N -0.566 5.566 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.352 0.648 42 H 0.036 0.964 43 H 0.084 0.916 44 H 0.391 0.609 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.407 -3.714 7.255 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.247 4.247 3 S 0.441 5.559 4 C -0.381 4.381 5 C -0.135 4.135 6 C -0.203 4.203 7 C 0.364 3.636 8 O -0.376 6.376 9 N -0.356 5.356 10 C -0.067 4.067 11 C -0.010 4.010 12 C -0.046 4.046 13 H 0.057 0.943 14 C -0.196 4.196 15 N -0.296 5.296 16 C -0.085 4.085 17 C 0.226 3.774 18 O -0.456 6.456 19 N -0.203 5.203 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.755 3.245 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.183 0.817 32 H 0.166 0.834 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.176 0.824 42 H 0.054 0.946 43 H 0.102 0.898 44 H 0.224 0.776 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.836 -2.354 8.368 19.842 hybrid contribution 0.734 -0.632 -1.217 1.555 sum 18.570 -2.987 7.151 20.122 Atomic orbital electron populations 1.20633 0.85455 1.03019 1.06294 1.24697 1.02345 0.96483 1.01128 1.83138 0.94767 1.07662 1.70328 1.25358 1.02311 0.97300 1.13172 1.21307 0.94380 0.96237 1.01549 1.20006 0.92859 0.93535 1.13917 1.17701 0.82909 0.83743 0.79285 1.90895 1.24963 1.81482 1.40275 1.47770 1.26253 1.12112 1.49492 1.22012 0.85651 1.02713 0.96281 1.21759 0.95934 0.82741 1.00540 1.21937 0.92066 0.93908 0.96662 0.94279 1.21738 1.00112 0.94536 1.03181 1.60197 1.36605 1.13191 1.19561 1.21745 0.97176 0.98511 0.91018 1.19833 0.85647 0.86191 0.85683 1.90515 1.67585 1.63153 1.24387 1.41866 1.37023 1.33414 1.07999 1.19689 1.16037 1.11343 0.95462 0.87944 1.25235 0.98883 0.99167 0.94679 1.69613 1.43432 1.43043 0.98425 0.85891 0.79848 0.80613 0.78148 1.20491 1.20975 1.19403 0.91655 0.87768 0.88960 0.81701 0.83428 0.92542 0.91070 0.90572 0.89991 0.88665 0.92304 0.92888 0.91621 0.82388 0.94633 0.89793 0.77609 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 9.32 36.01 0.34 -1.34 16 2 C -0.13 -1.90 6.33 -35.11 -0.22 -2.12 16 3 S 0.18 2.01 22.95 -107.50 -2.47 -0.45 16 4 C -0.25 -2.38 11.12 28.86 0.32 -2.06 16 5 C -0.11 -1.11 8.10 -39.02 -0.32 -1.43 16 6 C -0.19 -2.67 5.20 -104.63 -0.54 -3.21 16 7 C 0.58 9.10 5.44 -12.62 -0.07 9.03 16 8 O -0.50 -9.81 14.16 5.25 0.07 -9.73 16 9 N -0.62 -7.74 2.66 -182.94 -0.49 -8.23 16 10 C 0.08 0.66 8.99 59.85 0.54 1.20 16 11 C 0.11 1.35 5.19 -4.04 -0.02 1.33 16 12 C 0.07 0.89 2.95 -67.71 -0.20 0.69 16 13 H 0.04 0.50 7.80 -51.93 -0.40 0.09 16 14 C -0.14 -1.65 9.41 37.16 0.35 -1.30 16 15 N -0.66 -12.09 5.88 -108.00 -0.63 -12.72 16 16 C 0.05 0.93 5.97 -4.98 -0.03 0.90 16 17 C 0.44 10.77 7.82 -10.99 -0.09 10.68 16 18 O -0.57 -15.68 14.22 5.54 0.08 -15.60 16 19 N -0.57 -14.62 5.29 -10.96 -0.06 -14.67 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 29 H 0.10 2.20 6.52 -51.93 -0.34 1.86 16 30 H 0.09 1.70 7.55 -51.92 -0.39 1.31 16 31 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.15 1.18 6.01 -52.49 -0.32 0.86 16 33 H 0.06 0.37 7.04 -51.93 -0.37 0.00 16 34 H 0.07 0.51 8.03 -51.93 -0.42 0.09 16 35 H 0.08 0.71 5.97 -51.93 -0.31 0.40 16 36 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 37 H 0.10 1.31 7.36 -51.93 -0.38 0.93 16 38 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.35 6.95 4.31 -39.29 -0.17 6.78 16 42 H 0.04 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.08 1.50 7.44 -51.93 -0.39 1.11 16 44 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -33.56 377.53 -8.52 -42.07 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -6.23 Total: 17.10 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.18 Total: 4.40 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.46 Total: -59.76 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.15 Total: -25.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.47 Total: -0.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.56 -8.52 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734326022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.879 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds