Wall clock time and date at job start Tue Mar 31 2020 23:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70443 * 124.59018 * 2 1 4 4 C 1.75502 * 92.44293 * 179.74002 * 3 2 1 5 5 C 1.32766 * 110.57968 * 359.97438 * 4 3 2 6 6 C 1.36009 * 124.58801 * 179.70336 * 2 1 3 7 7 C 1.47186 * 123.46406 * 0.22285 * 6 2 1 8 8 O 1.21633 * 119.99892 * 320.30816 * 7 6 2 9 9 N 1.34781 * 119.99671 * 140.30229 * 7 6 2 10 10 C 1.46497 * 120.00074 * 4.58821 * 9 7 6 11 11 C 1.46501 * 119.99548 * 184.58982 * 9 7 6 12 12 C 1.53003 * 109.47199 * 90.00293 * 11 9 7 13 13 H 1.09000 * 109.46884 * 64.99434 * 12 11 9 14 14 C 1.52995 * 109.47140 * 184.99668 * 12 11 9 15 15 N 1.46900 * 109.46874 * 304.99832 * 12 11 9 16 16 C 1.46899 * 110.99993 * 154.99847 * 15 12 11 17 17 C 1.50701 * 109.47386 * 179.97438 * 16 15 12 18 18 O 1.21296 * 119.99592 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00421 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00035 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00386 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99577 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99532 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47484 * 90.00245 * 24 22 20 26 26 H 1.48500 * 109.46889 * 210.00339 * 24 22 20 27 27 H 1.48505 * 109.47243 * 329.99689 * 24 22 20 28 28 H 1.09004 * 109.47211 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47805 * 120.02588 * 1 2 3 30 30 H 1.09008 * 109.46911 * 240.02452 * 1 2 3 31 31 H 1.08005 * 124.70753 * 180.02562 * 4 3 2 32 32 H 1.07998 * 123.46337 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47113 * 84.44493 * 10 9 7 34 34 H 1.08995 * 109.46934 * 204.43709 * 10 9 7 35 35 H 1.09000 * 109.47312 * 324.44447 * 10 9 7 36 36 H 1.08998 * 109.46994 * 209.99674 * 11 9 7 37 37 H 1.09001 * 109.47486 * 330.00315 * 11 9 7 38 38 H 1.09002 * 109.47317 * 179.97438 * 14 12 11 39 39 H 1.08993 * 109.47535 * 300.00202 * 14 12 11 40 40 H 1.09007 * 109.47234 * 60.00439 * 14 12 11 41 41 H 1.00896 * 111.00118 * 31.04537 * 15 12 11 42 42 H 1.08993 * 109.47443 * 300.00172 * 16 15 12 43 43 H 1.09001 * 109.47025 * 59.99969 * 16 15 12 44 44 H 0.97001 * 119.99731 * 0.02562 * 19 17 16 45 45 H 0.97002 * 119.99920 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9606 0.4693 0.0080 5 6 3.6943 -0.8314 0.0109 6 6 2.2791 -1.1197 0.0058 7 6 1.7290 -2.4849 0.0081 8 8 0.7477 -2.7440 0.6785 9 7 2.3126 -3.4478 -0.7328 10 6 3.5514 -3.1622 -1.4606 11 6 1.7078 -4.7799 -0.8102 12 6 0.7277 -4.8277 -1.9841 13 1 1.2743 -4.7043 -2.9190 14 6 0.0046 -6.1760 -1.9901 15 7 -0.2556 -3.7452 -1.8453 16 6 -0.8126 -3.3693 -3.1515 17 6 -1.8155 -2.2593 -2.9694 18 8 -2.0435 -1.8239 -1.8605 19 7 -2.4584 -1.7497 -4.0387 20 6 -3.3711 -0.7403 -3.8729 21 1 -3.5747 -0.3531 -2.8855 22 6 -4.0343 -0.2153 -4.9754 23 7 -3.7870 -0.6867 -6.1768 24 14 -5.2774 1.1606 -4.7495 25 1 -4.5884 2.4721 -4.8516 26 1 -6.3185 1.0651 -5.8042 27 1 -5.9139 1.0384 -3.4134 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5142 -0.8897 30 1 -0.3633 -0.5135 0.8903 31 1 4.9537 0.8939 0.0110 32 1 4.4576 -1.5954 0.0162 33 1 4.4033 -3.2931 -0.7933 34 1 3.6428 -3.8459 -2.3046 35 1 3.5301 -2.1353 -1.8254 36 1 2.4890 -5.5254 -0.9586 37 1 1.1750 -4.9915 0.1169 38 1 -0.6940 -6.2099 -2.8262 39 1 0.7342 -6.9791 -2.0931 40 1 -0.5421 -6.2993 -1.0552 41 1 0.1495 -2.9460 -1.3814 42 1 -0.0091 -3.0299 -3.8051 43 1 -1.3045 -4.2330 -3.5989 44 1 -2.2758 -2.0977 -4.9256 45 1 -4.2502 -0.3205 -6.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734326022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:23 Heat of formation + Delta-G solvation = -53.650485 kcal Electronic energy + Delta-G solvation = -28303.117133 eV Core-core repulsion = 24446.633758 eV Total energy + Delta-G solvation = -3856.483374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50479 -40.11127 -38.43890 -37.54197 -36.19031 -35.72347 -33.30004 -32.94228 -32.21713 -28.92046 -28.31645 -27.99933 -26.53804 -25.77578 -24.32986 -22.11553 -21.23371 -21.13085 -19.96441 -19.74318 -18.22215 -18.02674 -17.54347 -17.24901 -17.06482 -16.48004 -16.25466 -15.99691 -15.67602 -15.49082 -15.12954 -14.81240 -14.62885 -14.30087 -14.16089 -13.95063 -13.70499 -13.52962 -13.49378 -13.36174 -13.27798 -13.02079 -12.91475 -12.88115 -12.60544 -12.56443 -12.44443 -12.38179 -12.13616 -11.98859 -11.86425 -11.49553 -10.90554 -10.31399 -10.01032 -9.80029 -9.63404 -9.37337 -9.28609 -8.47019 -5.95038 -0.14634 0.53860 0.96965 1.11998 1.35832 1.39359 1.52371 1.93236 2.03929 2.20162 2.28220 2.94433 3.19714 3.49226 3.66091 3.71384 3.89964 4.11267 4.18985 4.22854 4.26899 4.37903 4.39715 4.43552 4.51255 4.54302 4.54773 4.60949 4.70883 4.84929 4.89951 4.94123 4.96186 5.05928 5.09314 5.17483 5.33452 5.37341 5.40551 5.57969 5.91914 6.15422 6.28990 6.46182 6.60881 7.12798 7.14202 7.55240 8.12001 8.70718 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.004096 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.083126 B = 6835.063175 C = 8929.152055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.175 4.175 3 S 0.199 5.801 4 C -0.223 4.223 5 C -0.109 4.109 6 C -0.189 4.189 7 C 0.565 3.435 8 O -0.557 6.557 9 N -0.615 5.615 10 C 0.068 3.932 11 C 0.114 3.886 12 C 0.062 3.938 13 H 0.058 0.942 14 C -0.133 4.133 15 N -0.682 5.682 16 C 0.063 3.937 17 C 0.434 3.566 18 O -0.608 6.608 19 N -0.573 5.573 20 C -0.330 4.330 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.990 3.010 25 H -0.269 1.269 26 H -0.269 1.269 27 H -0.275 1.275 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.207 0.793 32 H 0.181 0.819 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.343 0.657 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.395 0.605 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.857 -4.039 6.167 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.295 4.295 3 S 0.465 5.535 4 C -0.358 4.358 5 C -0.137 4.137 6 C -0.207 4.207 7 C 0.354 3.646 8 O -0.436 6.436 9 N -0.348 5.348 10 C -0.074 4.074 11 C -0.009 4.009 12 C -0.048 4.048 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.320 5.320 16 C -0.070 4.070 17 C 0.222 3.778 18 O -0.493 6.493 19 N -0.210 5.210 20 C -0.459 4.459 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.562 5.562 24 Si 0.814 3.186 25 H -0.194 1.194 26 H -0.194 1.194 27 H -0.200 1.200 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.224 0.776 32 H 0.198 0.802 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.166 0.834 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.228 0.772 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.337 -2.710 7.230 22.690 hybrid contribution -0.253 -0.570 -0.868 1.069 sum 21.084 -3.280 6.362 22.265 Atomic orbital electron populations 1.20248 0.88353 1.02253 1.03043 1.24574 1.01158 0.99072 1.04661 1.82971 0.95147 1.05998 1.69427 1.25858 1.02938 0.96602 1.10385 1.21491 0.92760 0.97545 1.01940 1.20293 0.94874 0.92544 1.12994 1.18117 0.82432 0.84920 0.79179 1.90860 1.27347 1.82440 1.42915 1.47880 1.26946 1.11554 1.48441 1.22330 0.84590 1.03073 0.97399 1.21848 0.96793 0.83601 0.98614 1.22147 0.91742 0.92713 0.98206 0.92376 1.21725 1.00684 0.94897 1.01796 1.60226 1.38920 1.13969 1.18883 1.21595 0.96305 0.96842 0.92226 1.20829 0.85671 0.86607 0.84737 1.90505 1.68640 1.64380 1.25798 1.41901 1.37217 1.33430 1.08496 1.19626 1.18121 1.13216 0.94948 0.90535 1.25997 1.00040 1.00966 0.94107 1.69671 1.43908 1.43730 0.98886 0.84969 0.77708 0.77936 0.77979 1.19445 1.19416 1.20038 0.91020 0.92159 0.91492 0.77601 0.80177 0.89431 0.88804 0.91155 0.85256 0.91282 0.93182 0.89074 0.93472 0.83436 0.92717 0.88118 0.77184 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.14 9.32 71.24 0.66 -2.47 16 2 C -0.17 -5.48 6.33 25.17 0.16 -5.32 16 3 S 0.20 4.35 22.95 -56.49 -1.30 3.06 16 4 C -0.22 -3.49 11.12 66.64 0.74 -2.75 16 5 C -0.11 -1.99 8.10 22.67 0.18 -1.81 16 6 C -0.19 -5.41 5.20 -19.87 -0.10 -5.51 16 7 C 0.57 18.30 5.44 86.59 0.47 18.77 16 8 O -0.56 -23.45 14.16 -4.14 -0.06 -23.51 16 9 N -0.61 -14.43 2.66 -850.94 -2.27 -16.69 16 10 C 0.07 0.92 8.99 127.77 1.15 2.07 16 11 C 0.11 2.52 5.19 86.38 0.45 2.97 16 12 C 0.06 1.60 2.95 44.91 0.13 1.73 16 13 H 0.06 1.30 7.80 -2.39 -0.02 1.28 16 14 C -0.13 -2.99 9.41 71.98 0.68 -2.31 16 15 N -0.68 -25.69 5.88 -495.59 -2.91 -28.61 16 16 C 0.06 2.45 5.97 85.56 0.51 2.96 16 17 C 0.43 22.27 7.82 87.66 0.69 22.95 16 18 O -0.61 -35.75 14.22 -3.08 -0.04 -35.79 16 19 N -0.57 -30.80 5.29 -306.98 -1.62 -32.42 16 20 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 23 N -0.92 -50.75 13.05 21.67 0.28 -50.46 16 24 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 29 H 0.06 2.85 6.52 -2.39 -0.02 2.83 16 30 H 0.07 2.82 7.55 -2.38 -0.02 2.80 16 31 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.18 2.02 6.01 -2.91 -0.02 2.00 16 33 H 0.09 0.69 7.04 -2.39 -0.02 0.67 16 34 H 0.09 0.88 8.03 -2.39 -0.02 0.87 16 35 H 0.07 1.08 5.97 -2.39 -0.01 1.07 16 36 H 0.13 1.63 8.07 -2.39 -0.02 1.61 16 37 H 0.07 1.93 7.36 -2.39 -0.02 1.91 16 38 H 0.05 1.20 7.45 -2.39 -0.02 1.19 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.34 14.22 4.31 -89.70 -0.39 13.83 16 42 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 43 H 0.10 3.56 7.44 -2.39 -0.02 3.55 16 44 H 0.39 20.18 7.90 -92.71 -0.73 19.45 16 45 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -80.13 377.53 1.03 -79.10 By element: Atomic # 1 Polarization: 46.66 SS G_CDS: -0.08 Total: 46.58 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 7.00 Total: 12.58 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -6.52 Total: -128.18 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -0.10 Total: -59.30 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.30 Total: 3.06 kcal Total: -80.13 1.03 -79.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734326022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.454 kcal (2) G-P(sol) polarization free energy of solvation -80.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds