Wall clock time and date at job start Tue Mar 31 2020 22:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48494 * 109.47090 * 269.99765 * 3 2 1 5 5 H 1.48497 * 109.47239 * 30.00431 * 3 2 1 6 6 H 1.48506 * 109.46789 * 149.99902 * 3 2 1 7 7 C 1.38942 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00564 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00062 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00326 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99549 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46661 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.46727 * 325.00012 * 14 13 12 16 16 C 1.52995 * 109.46889 * 85.00162 * 14 13 12 17 17 O 1.42905 * 109.47617 * 65.00010 * 16 14 13 18 18 C 1.53000 * 109.46965 * 204.99952 * 14 13 12 19 19 N 1.46498 * 109.47043 * 55.00259 * 18 14 13 20 20 C 1.34775 * 119.99673 * 179.97438 * 19 18 14 21 21 O 1.21555 * 120.00274 * 359.97438 * 20 19 18 22 22 C 1.47854 * 119.99972 * 180.02562 * 20 19 18 23 23 C 1.39593 * 120.13100 * 359.72097 * 22 20 19 24 24 C 1.37951 * 119.90520 * 179.77172 * 23 22 20 25 25 C 1.38342 * 120.17283 * 0.50851 * 24 23 22 26 26 C 1.38553 * 120.26505 * 359.74326 * 25 24 23 27 27 F 1.35103 * 119.95108 * 180.02562 * 26 25 24 28 28 C 1.38207 * 120.09780 * 0.02562 * 26 25 24 29 29 H 0.97010 * 119.99812 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99274 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47155 * 60.00029 * 12 10 9 32 32 H 1.08997 * 109.47111 * 299.99951 * 12 10 9 33 33 H 1.00902 * 111.00533 * 56.04452 * 13 12 10 34 34 H 1.09005 * 109.47116 * 185.00057 * 16 14 13 35 35 H 1.08999 * 109.47249 * 304.99813 * 16 14 13 36 36 H 0.96694 * 113.99954 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.46848 * 175.00326 * 18 14 13 38 38 H 1.08999 * 109.47502 * 294.99922 * 18 14 13 39 39 H 0.96995 * 120.00227 * 359.97438 * 19 18 14 40 40 H 1.07996 * 120.04873 * 0.02562 * 23 22 20 41 41 H 1.07997 * 119.91547 * 180.23095 * 24 23 22 42 42 H 1.07997 * 119.86608 * 179.72215 * 25 24 23 43 43 H 1.07995 * 120.09371 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2436 -4.8629 -0.0032 13 7 2.1982 -5.9794 -0.0050 14 6 1.4978 -7.2708 -0.0062 15 1 0.5849 -7.1895 0.5838 16 6 1.1436 -7.6575 -1.4435 17 8 2.3439 -7.8776 -2.1872 18 6 2.4042 -8.3431 0.6018 19 7 2.8401 -7.9162 1.9337 20 6 3.6508 -8.7080 2.6633 21 8 4.0199 -9.7764 2.2164 22 6 4.0902 -8.2775 4.0077 23 6 3.6718 -7.0490 4.5217 24 6 4.0809 -6.6540 5.7786 25 6 4.9130 -7.4676 6.5266 26 6 5.3369 -8.6861 6.0213 27 9 6.1491 -9.4758 6.7574 28 6 4.9300 -9.0948 4.7653 29 1 -0.4850 0.8402 -0.0004 30 1 0.3533 -2.3905 -0.0016 31 1 0.6166 -4.9200 -0.8930 32 1 0.6173 -4.9212 0.8869 33 1 2.8337 -5.9132 0.7759 34 1 0.5472 -8.5698 -1.4378 35 1 0.5721 -6.8527 -1.9059 36 1 2.1949 -8.1272 -3.1094 37 1 1.8541 -9.2807 0.6826 38 1 3.2757 -8.4871 -0.0369 39 1 2.5452 -7.0638 2.2904 40 1 3.0255 -6.4104 3.9379 41 1 3.7542 -5.7052 6.1779 42 1 5.2339 -7.1515 7.5082 43 1 5.2600 -10.0448 4.3716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734361448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:39 Heat of formation + Delta-G solvation = -130.879786 kcal Electronic energy + Delta-G solvation = -28525.722987 eV Core-core repulsion = 24099.677523 eV Total energy + Delta-G solvation = -4426.045464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.20962 -40.49125 -38.87450 -38.27809 -37.51211 -35.63762 -34.23037 -33.71305 -31.79072 -31.29878 -31.00227 -29.93647 -26.40546 -26.22978 -24.18526 -23.77954 -22.95437 -20.85126 -20.63949 -19.43080 -18.70735 -17.95977 -17.52493 -16.95786 -16.70213 -16.56429 -16.05822 -15.96044 -15.61426 -15.53226 -15.39484 -14.67040 -14.56732 -14.31773 -14.17650 -13.89204 -13.76498 -13.64527 -13.46449 -13.30804 -12.69764 -12.51235 -12.35880 -12.19271 -11.85922 -11.68851 -11.63961 -11.51777 -11.11716 -11.05793 -10.43278 -10.26824 -10.22232 -9.95181 -9.56048 -9.54319 -9.27628 -9.12296 -8.52475 -8.16773 -8.01665 -6.47043 -3.87925 0.36109 0.79576 2.51323 2.80940 3.14302 3.23488 3.28971 3.41379 3.82660 3.86978 3.95049 4.18726 4.27375 4.28144 4.38507 4.58041 4.67019 4.67300 4.88229 4.92429 5.11928 5.18439 5.23204 5.29004 5.33778 5.51103 5.57517 5.59166 5.64176 5.67568 5.79772 5.85301 5.87581 5.96646 6.15028 6.19494 6.41799 7.06549 7.17600 7.48288 7.50483 7.71312 7.92954 8.00763 8.55401 9.12769 9.48192 9.99511 10.70579 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.002770 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.322870 B =10105.794484 C =12662.714776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.047 3.953 13 N -0.653 5.653 14 C 0.075 3.925 15 H 0.061 0.939 16 C 0.092 3.908 17 O -0.554 6.554 18 C 0.122 3.878 19 N -0.724 5.724 20 C 0.562 3.438 21 O -0.531 6.531 22 C -0.105 4.105 23 C -0.094 4.094 24 C -0.094 4.094 25 C -0.129 4.129 26 C 0.091 3.909 27 F -0.136 7.136 28 C -0.096 4.096 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.348 0.652 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.373 0.627 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.398 0.602 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 -16.480 8.333 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.086 4.086 13 N -0.289 5.289 14 C -0.035 4.035 15 H 0.079 0.921 16 C 0.012 3.988 17 O -0.358 6.358 18 C -0.002 4.002 19 N -0.377 5.377 20 C 0.349 3.651 21 O -0.409 6.409 22 C -0.108 4.108 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.148 4.148 26 C 0.071 3.929 27 F -0.115 7.115 28 C -0.116 4.116 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.219 0.781 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.235 0.765 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.863 -16.947 7.921 18.727 hybrid contribution -0.972 1.137 0.622 1.620 sum -0.109 -15.810 8.543 17.971 Atomic orbital electron populations 1.69611 1.05945 1.28200 1.50573 1.25256 0.95630 0.99732 0.97258 0.85862 0.79238 0.80766 0.78472 1.20364 1.20930 1.19382 1.19704 0.93384 0.82189 1.47610 0.87899 1.41862 1.09161 1.04591 1.64356 1.19745 0.88401 0.84621 0.84761 1.90547 1.13663 1.86946 1.55183 1.21803 0.94355 0.91219 1.01175 1.60000 1.18362 0.98943 1.51556 1.21900 0.96037 0.90179 0.95433 0.92090 1.22063 0.86934 0.98492 0.91297 1.86607 1.30704 1.92172 1.26287 1.21537 1.00061 0.96549 0.82005 1.45948 1.50383 1.22880 1.18478 1.18062 0.78427 0.84120 0.84510 1.90791 1.55817 1.22439 1.71831 1.19758 1.00406 0.95717 0.94929 1.21448 0.98952 0.94851 0.96022 1.21037 0.96482 0.99882 0.93766 1.21399 0.98743 0.93128 1.01543 1.17546 0.94192 0.90511 0.90616 1.91527 1.70371 1.73317 1.76274 1.21210 0.96832 1.01180 0.92361 0.91850 0.77504 0.89513 0.93876 0.83040 0.93623 0.92978 0.78057 0.90742 0.88798 0.76537 0.84789 0.83928 0.84142 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 10 C 0.44 9.88 7.82 -10.98 -0.09 9.79 16 11 O -0.58 -15.29 15.78 5.55 0.09 -15.20 16 12 C 0.05 0.76 5.96 -4.97 -0.03 0.73 16 13 N -0.65 -9.86 5.87 -107.99 -0.63 -10.50 16 14 C 0.08 0.84 2.60 -67.71 -0.18 0.67 16 15 H 0.06 0.57 7.80 -51.93 -0.41 0.17 16 16 C 0.09 0.94 6.80 37.16 0.25 1.20 16 17 O -0.55 -6.65 12.64 -35.23 -0.45 -7.09 16 18 C 0.12 1.41 5.20 -4.04 -0.02 1.39 16 19 N -0.72 -8.09 4.94 -61.25 -0.30 -8.40 16 20 C 0.56 7.22 7.77 -12.33 -0.10 7.13 16 21 O -0.53 -8.49 16.35 5.32 0.09 -8.40 16 22 C -0.10 -1.16 5.87 -104.97 -0.62 -1.77 16 23 C -0.09 -0.85 9.54 -39.18 -0.37 -1.23 16 24 C -0.09 -0.74 10.03 -39.65 -0.40 -1.14 16 25 C -0.13 -1.06 10.02 -39.43 -0.40 -1.46 16 26 C 0.09 0.91 7.29 -39.48 -0.29 0.62 16 27 F -0.14 -1.45 17.26 2.25 0.04 -1.41 16 28 C -0.10 -1.05 9.57 -39.11 -0.37 -1.43 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 31 H 0.09 1.29 7.36 -51.93 -0.38 0.91 16 32 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.35 5.42 6.41 -39.29 -0.25 5.17 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.55 7.35 -51.93 -0.38 0.16 16 36 H 0.37 2.81 9.12 45.56 0.42 3.22 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.34 7.39 -51.93 -0.38 0.95 16 39 H 0.40 3.84 5.40 -40.82 -0.22 3.62 16 40 H 0.13 1.02 6.40 -52.49 -0.34 0.68 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.15 1.64 7.65 -52.49 -0.40 1.24 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -34.72 374.43 -7.01 -41.74 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -4.29 Total: 18.17 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.84 Total: 6.74 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.27 Total: -55.74 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.27 Total: -30.70 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.72 -7.01 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734361448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.141 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds