Wall clock time and date at job start Tue Mar 31 2020 22:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48494 * 109.47090 * 269.99765 * 3 2 1 5 5 H 1.48497 * 109.47239 * 30.00431 * 3 2 1 6 6 H 1.48506 * 109.46789 * 149.99902 * 3 2 1 7 7 C 1.38942 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00564 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00062 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00326 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99549 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46661 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.46727 * 325.00012 * 14 13 12 16 16 C 1.52995 * 109.46889 * 85.00162 * 14 13 12 17 17 O 1.42905 * 109.47617 * 65.00010 * 16 14 13 18 18 C 1.53000 * 109.46965 * 204.99952 * 14 13 12 19 19 N 1.46498 * 109.47043 * 55.00259 * 18 14 13 20 20 C 1.34775 * 119.99673 * 179.97438 * 19 18 14 21 21 O 1.21555 * 120.00274 * 359.97438 * 20 19 18 22 22 C 1.47854 * 119.99972 * 180.02562 * 20 19 18 23 23 C 1.39593 * 120.13100 * 359.72097 * 22 20 19 24 24 C 1.37951 * 119.90520 * 179.77172 * 23 22 20 25 25 C 1.38342 * 120.17283 * 0.50851 * 24 23 22 26 26 C 1.38553 * 120.26505 * 359.74326 * 25 24 23 27 27 F 1.35103 * 119.95108 * 180.02562 * 26 25 24 28 28 C 1.38207 * 120.09780 * 0.02562 * 26 25 24 29 29 H 0.97010 * 119.99812 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99274 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47155 * 60.00029 * 12 10 9 32 32 H 1.08997 * 109.47111 * 299.99951 * 12 10 9 33 33 H 1.00902 * 111.00533 * 56.04452 * 13 12 10 34 34 H 1.09005 * 109.47116 * 185.00057 * 16 14 13 35 35 H 1.08999 * 109.47249 * 304.99813 * 16 14 13 36 36 H 0.96694 * 113.99954 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.46848 * 175.00326 * 18 14 13 38 38 H 1.08999 * 109.47502 * 294.99922 * 18 14 13 39 39 H 0.96995 * 120.00227 * 359.97438 * 19 18 14 40 40 H 1.07996 * 120.04873 * 0.02562 * 23 22 20 41 41 H 1.07997 * 119.91547 * 180.23095 * 24 23 22 42 42 H 1.07997 * 119.86608 * 179.72215 * 25 24 23 43 43 H 1.07995 * 120.09371 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2436 -4.8629 -0.0032 13 7 2.1982 -5.9794 -0.0050 14 6 1.4978 -7.2708 -0.0062 15 1 0.5849 -7.1895 0.5838 16 6 1.1436 -7.6575 -1.4435 17 8 2.3439 -7.8776 -2.1872 18 6 2.4042 -8.3431 0.6018 19 7 2.8401 -7.9162 1.9337 20 6 3.6508 -8.7080 2.6633 21 8 4.0199 -9.7764 2.2164 22 6 4.0902 -8.2775 4.0077 23 6 3.6718 -7.0490 4.5217 24 6 4.0809 -6.6540 5.7786 25 6 4.9130 -7.4676 6.5266 26 6 5.3369 -8.6861 6.0213 27 9 6.1491 -9.4758 6.7574 28 6 4.9300 -9.0948 4.7653 29 1 -0.4850 0.8402 -0.0004 30 1 0.3533 -2.3905 -0.0016 31 1 0.6166 -4.9200 -0.8930 32 1 0.6173 -4.9212 0.8869 33 1 2.8337 -5.9132 0.7759 34 1 0.5472 -8.5698 -1.4378 35 1 0.5721 -6.8527 -1.9059 36 1 2.1949 -8.1272 -3.1094 37 1 1.8541 -9.2807 0.6826 38 1 3.2757 -8.4871 -0.0369 39 1 2.5452 -7.0638 2.2904 40 1 3.0255 -6.4104 3.9379 41 1 3.7542 -5.7052 6.1779 42 1 5.2339 -7.1515 7.5082 43 1 5.2600 -10.0448 4.3716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734361448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:38 Heat of formation + Delta-G solvation = -159.983480 kcal Electronic energy + Delta-G solvation = -28526.985018 eV Core-core repulsion = 24099.677523 eV Total energy + Delta-G solvation = -4427.307495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.00238 -41.41786 -40.23393 -39.38129 -38.61959 -36.61113 -35.95806 -35.01383 -33.24630 -32.58558 -31.82790 -30.91797 -27.91883 -27.14687 -25.72953 -24.71583 -23.69213 -21.78879 -21.54431 -21.10652 -19.93553 -19.56600 -18.40753 -18.03127 -17.64689 -17.29645 -17.25209 -16.81160 -16.75289 -16.56916 -16.53047 -16.34274 -15.92466 -15.55761 -15.21075 -15.00658 -14.88031 -14.65354 -14.50090 -14.24298 -14.04287 -13.56822 -13.48470 -13.26049 -13.09329 -13.01238 -12.87518 -12.66891 -12.44765 -12.39113 -12.10950 -11.99131 -11.48915 -11.22602 -10.75519 -10.40015 -10.31516 -10.13481 -9.98762 -9.88353 -9.31303 -8.44922 -5.92842 -0.41472 0.05796 1.39176 1.43837 1.55538 1.63164 1.90691 2.08410 2.30255 2.60964 2.84453 3.12877 3.23125 3.44959 3.45911 3.50085 3.68247 3.78354 3.93417 3.98380 4.14016 4.21597 4.31438 4.39263 4.47389 4.54161 4.57439 4.65233 4.71572 4.79382 4.88977 4.95179 5.01283 5.08117 5.18715 5.22923 5.43532 5.70567 5.89188 6.10767 6.27164 6.32620 6.62996 6.97687 7.08269 7.15717 7.59571 8.15385 8.72259 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009183 B = 0.002770 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.322870 B =10105.794484 C =12662.714776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.062 3.938 13 N -0.674 5.674 14 C 0.078 3.922 15 H 0.093 0.907 16 C 0.087 3.913 17 O -0.583 6.583 18 C 0.128 3.872 19 N -0.714 5.714 20 C 0.559 3.441 21 O -0.572 6.572 22 C -0.121 4.121 23 C -0.092 4.092 24 C -0.089 4.089 25 C -0.119 4.119 26 C 0.078 3.922 27 F -0.143 7.143 28 C -0.110 4.110 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.342 0.658 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.390 0.610 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.407 0.593 40 H 0.150 0.850 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 -15.677 9.280 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.070 4.070 13 N -0.309 5.309 14 C -0.031 4.031 15 H 0.110 0.890 16 C 0.008 3.992 17 O -0.390 6.390 18 C 0.004 3.996 19 N -0.366 5.366 20 C 0.347 3.653 21 O -0.453 6.453 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.107 4.107 25 C -0.137 4.137 26 C 0.059 3.941 27 F -0.122 7.122 28 C -0.130 4.130 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.238 0.762 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.245 0.755 40 H 0.167 0.833 41 H 0.190 0.810 42 H 0.185 0.815 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.769 -16.141 8.855 18.427 hybrid contribution -0.462 0.846 0.323 1.016 sum -1.231 -15.296 9.178 17.881 Atomic orbital electron populations 1.69660 1.06700 1.29213 1.50453 1.25954 0.96487 1.02190 0.96398 0.84994 0.78016 0.77242 0.78516 1.20011 1.19529 1.19740 1.19624 0.92626 0.84081 1.49747 0.90498 1.41911 1.09319 1.04606 1.65105 1.20879 0.88224 0.86165 0.82186 1.90520 1.16010 1.87926 1.56499 1.21668 0.93900 0.87783 1.03612 1.59981 1.18937 1.00208 1.51815 1.22048 0.96517 0.87799 0.96745 0.88966 1.22219 0.86632 0.99998 0.90339 1.86566 1.32140 1.92401 1.27877 1.21440 0.99097 0.97459 0.81575 1.45874 1.49699 1.22919 1.18143 1.18399 0.78048 0.83663 0.85168 1.90761 1.57435 1.24218 1.72885 1.19670 1.01594 0.96904 0.94280 1.21683 0.98676 0.93995 0.96705 1.21406 0.95576 1.00719 0.93006 1.21736 0.97607 0.91902 1.02478 1.17694 0.94688 0.91354 0.90409 1.91507 1.70654 1.73696 1.76306 1.21197 0.97553 1.01081 0.93156 0.91345 0.76892 0.87770 0.90336 0.83723 0.90508 0.92909 0.76155 0.89478 0.91851 0.75469 0.83269 0.80989 0.81501 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.75 13.05 21.66 0.28 -47.46 16 2 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 3 Si 0.99 41.71 29.55 68.60 2.03 43.73 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.33 -18.13 9.68 84.04 0.81 -17.31 16 8 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 9 N -0.57 -27.65 5.29 -306.99 -1.62 -29.28 16 10 C 0.44 19.46 7.82 87.66 0.69 20.15 16 11 O -0.62 -33.30 15.78 -3.05 -0.05 -33.34 16 12 C 0.06 1.86 5.96 85.56 0.51 2.37 16 13 N -0.67 -19.26 5.87 -495.58 -2.91 -22.17 16 14 C 0.08 1.57 2.60 44.91 0.12 1.69 16 15 H 0.09 1.33 7.80 -2.39 -0.02 1.31 16 16 C 0.09 1.58 6.80 71.98 0.49 2.07 16 17 O -0.58 -13.42 12.64 -148.98 -1.88 -15.31 16 18 C 0.13 2.84 5.20 86.38 0.45 3.29 16 19 N -0.71 -15.45 4.94 -465.97 -2.30 -17.76 16 20 C 0.56 14.61 7.77 86.79 0.67 15.29 16 21 O -0.57 -19.11 16.35 -3.89 -0.06 -19.17 16 22 C -0.12 -2.67 5.87 -20.09 -0.12 -2.79 16 23 C -0.09 -1.52 9.54 22.53 0.21 -1.31 16 24 C -0.09 -1.18 10.03 22.23 0.22 -0.96 16 25 C -0.12 -1.70 10.02 22.37 0.22 -1.47 16 26 C 0.08 1.53 7.29 22.34 0.16 1.69 16 27 F -0.14 -3.02 17.26 44.97 0.78 -2.25 16 28 C -0.11 -2.49 9.57 22.58 0.22 -2.27 16 29 H 0.28 13.51 8.31 -92.70 -0.77 12.74 16 30 H 0.40 18.03 7.90 -92.71 -0.73 17.30 16 31 H 0.10 2.80 7.36 -2.39 -0.02 2.78 16 32 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 33 H 0.34 10.32 6.41 -89.69 -0.58 9.75 16 34 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.05 0.96 7.35 -2.39 -0.02 0.94 16 36 H 0.39 5.49 9.12 -74.06 -0.68 4.82 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.84 7.39 -2.39 -0.02 1.82 16 39 H 0.41 7.24 5.40 -92.71 -0.50 6.74 16 40 H 0.15 1.94 6.40 -2.91 -0.02 1.92 16 41 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 43 H 0.14 3.29 7.65 -2.91 -0.02 3.27 16 Total: -1.00 -77.21 374.43 -1.99 -79.20 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -1.37 Total: 43.44 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 5.13 Total: 20.37 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -6.55 Total: -116.67 kcal Atomic # 8 Polarization: -65.83 SS G_CDS: -1.99 Total: -67.82 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -77.21 -1.99 -79.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734361448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.788 kcal (2) G-P(sol) polarization free energy of solvation -77.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds