Wall clock time and date at job start Tue Mar 31 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47074 * 35.00312 * 14 13 12 16 16 C 1.52996 * 109.47518 * 275.00138 * 14 13 12 17 17 O 1.42900 * 109.46993 * 295.00041 * 16 14 13 18 18 C 1.53003 * 109.47236 * 154.99590 * 14 13 12 19 19 N 1.46498 * 109.47370 * 305.00500 * 18 14 13 20 20 C 1.34779 * 120.00115 * 179.97438 * 19 18 14 21 21 O 1.21550 * 119.99665 * 359.97438 * 20 19 18 22 22 C 1.47852 * 120.00121 * 179.97438 * 20 19 18 23 23 C 1.39600 * 120.13252 * 359.72701 * 22 20 19 24 24 C 1.37945 * 119.90664 * 179.76885 * 23 22 20 25 25 C 1.38345 * 120.17085 * 0.50767 * 24 23 22 26 26 C 1.38550 * 120.26967 * 359.74165 * 25 24 23 27 27 F 1.35090 * 119.95749 * 180.02562 * 26 25 24 28 28 C 1.38219 * 120.09136 * 0.02562 * 26 25 24 29 29 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 32 32 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 33 33 H 1.00902 * 111.00178 * 56.04567 * 13 12 10 34 34 H 1.09003 * 109.47323 * 54.99778 * 16 14 13 35 35 H 1.09002 * 109.47449 * 175.00109 * 16 14 13 36 36 H 0.96697 * 114.00205 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.46720 * 65.00010 * 18 14 13 38 38 H 1.08994 * 109.47381 * 185.00037 * 18 14 13 39 39 H 0.96999 * 119.99750 * 359.97438 * 19 18 14 40 40 H 1.08005 * 120.04326 * 0.02562 * 23 22 20 41 41 H 1.08001 * 119.91392 * 180.23063 * 24 23 22 42 42 H 1.07995 * 119.86315 * 179.77210 * 25 24 23 43 43 H 1.08000 * 120.08902 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 1.4977 -7.2708 -0.0035 15 1 0.5817 -7.1878 -0.5885 16 6 1.1509 -7.6619 1.4344 17 8 2.3551 -7.8844 2.1710 18 6 2.4007 -8.3413 -0.6197 19 7 2.8297 -7.9104 -1.9525 20 6 3.6373 -8.6995 -2.6885 21 8 4.0101 -9.7685 -2.2461 22 6 4.0697 -8.2649 -4.0338 23 6 3.6386 -7.0402 -4.5469 24 6 4.0488 -6.6371 -5.8008 25 6 4.8777 -7.4480 -6.5552 26 6 5.3057 -8.6672 -6.0552 27 9 6.1155 -9.4538 -6.7971 28 6 4.9054 -9.0798 -4.7983 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 0.0016 31 1 0.6209 -4.9225 0.8949 32 1 0.6128 -4.9187 -0.8850 33 1 2.8365 -5.9142 0.7741 34 1 0.5819 -6.8586 1.9023 35 1 0.5545 -8.5743 1.4290 36 1 2.2110 -8.1362 3.0935 37 1 3.2756 -8.4872 0.0140 38 1 1.8503 -9.2785 -0.7005 39 1 2.5325 -7.0571 -2.3053 40 1 2.9882 -6.4074 -3.9612 41 1 3.7183 -5.6880 -6.1963 42 1 5.1928 -7.1292 -7.5378 43 1 5.2394 -10.0300 -4.4084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734361449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:42 Heat of formation + Delta-G solvation = -166.096292 kcal Electronic energy + Delta-G solvation = -28506.241651 eV Core-core repulsion = 24078.669085 eV Total energy + Delta-G solvation = -4427.572566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.97897 -41.25963 -40.22434 -39.31911 -38.69108 -36.46830 -35.93523 -35.02160 -33.23347 -32.53053 -31.77653 -30.84354 -27.83135 -27.02887 -25.64941 -24.65453 -23.64880 -21.90192 -21.49938 -21.08547 -19.90395 -19.39446 -18.47544 -17.91723 -17.56571 -17.24346 -17.03798 -16.85541 -16.75234 -16.58873 -16.39616 -16.30373 -15.86661 -15.59406 -15.21419 -15.11621 -14.85393 -14.57934 -14.47442 -14.20361 -13.95031 -13.54225 -13.33724 -13.22731 -13.03978 -12.90999 -12.87580 -12.58330 -12.39849 -12.38677 -12.24450 -12.11571 -11.47663 -11.14498 -10.91433 -10.30728 -10.29546 -10.01076 -9.97564 -9.81803 -9.32947 -8.44334 -5.91983 -0.35147 0.09927 1.39426 1.43940 1.55567 1.72270 2.09672 2.10402 2.30829 2.67514 2.86340 3.18130 3.23876 3.36597 3.59411 3.69136 3.73082 3.81564 3.99463 4.02965 4.08886 4.26210 4.33258 4.37277 4.47241 4.55402 4.62996 4.65202 4.73419 4.79957 4.92861 4.99953 5.03084 5.14279 5.24082 5.41547 5.44172 5.75152 5.91456 6.12437 6.34576 6.52155 6.64123 6.90682 7.15119 7.16827 7.61245 8.17197 8.72871 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.002772 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.907520 B =10098.636793 C =12663.565846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.330 4.330 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.623 6.623 12 C 0.063 3.937 13 N -0.671 5.671 14 C 0.078 3.922 15 H 0.123 0.877 16 C 0.048 3.952 17 O -0.590 6.590 18 C 0.140 3.860 19 N -0.695 5.695 20 C 0.552 3.448 21 O -0.583 6.583 22 C -0.120 4.120 23 C -0.090 4.090 24 C -0.090 4.090 25 C -0.120 4.120 26 C 0.077 3.923 27 F -0.143 7.143 28 C -0.112 4.112 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.349 0.651 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.414 0.586 40 H 0.149 0.851 41 H 0.172 0.828 42 H 0.167 0.833 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -15.409 -7.153 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.812 3.188 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.510 6.510 12 C -0.069 4.069 13 N -0.304 5.304 14 C -0.032 4.032 15 H 0.141 0.859 16 C -0.032 4.032 17 O -0.398 6.398 18 C 0.015 3.985 19 N -0.346 5.346 20 C 0.340 3.660 21 O -0.465 6.465 22 C -0.123 4.123 23 C -0.109 4.109 24 C -0.108 4.108 25 C -0.139 4.139 26 C 0.057 3.943 27 F -0.122 7.122 28 C -0.132 4.132 29 H 0.086 0.914 30 H 0.231 0.769 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.253 0.747 40 H 0.167 0.833 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.069 -15.846 -8.075 17.817 hybrid contribution -0.441 0.815 1.454 1.724 sum -1.510 -15.031 -6.621 16.494 Atomic orbital electron populations 1.69657 1.06681 1.29175 1.50560 1.25943 0.96476 1.02164 0.96469 0.85004 0.77884 0.77291 0.78655 1.19596 1.19749 1.20025 1.19613 0.92599 0.84124 1.49665 0.90543 1.41910 1.09311 1.04626 1.65213 1.20922 0.88228 0.86194 0.82041 1.90526 1.16035 1.87953 1.56450 1.21643 0.93965 0.87736 1.03553 1.60111 1.18112 1.00051 1.52091 1.22102 0.97582 0.88345 0.95186 0.85943 1.22845 0.87010 1.01218 0.92100 1.86462 1.32110 1.92410 1.28826 1.21243 0.98541 0.96595 0.82087 1.45697 1.48813 1.22666 1.17394 1.18435 0.78458 0.83825 0.85320 1.90735 1.57864 1.24502 1.73424 1.19723 1.01347 0.96836 0.94377 1.21706 0.98543 0.94032 0.96627 1.21398 0.95691 1.00668 0.93053 1.21711 0.97774 0.91951 1.02444 1.17683 0.94833 0.91417 0.90321 1.91497 1.70804 1.73895 1.76005 1.21190 0.97826 1.01032 0.93116 0.91381 0.76913 0.91529 0.86608 0.83143 0.92451 0.90472 0.75297 0.92820 0.90205 0.74738 0.83310 0.81104 0.81532 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.64 13.05 21.66 0.28 -47.36 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 0.99 41.64 29.55 68.60 2.03 43.67 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.33 -17.99 9.68 84.04 0.81 -17.18 16 8 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 9 N -0.57 -27.42 5.29 -306.98 -1.62 -29.05 16 10 C 0.44 19.12 7.82 87.66 0.69 19.81 16 11 O -0.62 -32.81 15.78 -3.08 -0.05 -32.86 16 12 C 0.06 1.80 5.96 85.56 0.51 2.31 16 13 N -0.67 -18.17 5.32 -495.57 -2.63 -20.81 16 14 C 0.08 1.48 2.57 44.91 0.12 1.59 16 15 H 0.12 1.68 7.80 -2.39 -0.02 1.66 16 16 C 0.05 0.75 6.72 71.98 0.48 1.24 16 17 O -0.59 -11.41 12.05 -148.98 -1.80 -13.20 16 18 C 0.14 3.18 5.26 86.38 0.45 3.63 16 19 N -0.70 -16.62 5.34 -465.96 -2.49 -19.11 16 20 C 0.55 15.61 7.77 86.79 0.67 16.28 16 21 O -0.58 -20.52 16.35 -3.87 -0.06 -20.58 16 22 C -0.12 -2.90 5.87 -20.09 -0.12 -3.01 16 23 C -0.09 -1.71 9.54 22.53 0.21 -1.50 16 24 C -0.09 -1.37 10.03 22.23 0.22 -1.14 16 25 C -0.12 -1.91 10.02 22.37 0.22 -1.68 16 26 C 0.08 1.62 7.29 22.34 0.16 1.78 16 27 F -0.14 -3.20 17.26 44.97 0.78 -2.42 16 28 C -0.11 -2.72 9.57 22.58 0.22 -2.50 16 29 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 30 H 0.40 17.85 7.90 -92.71 -0.73 17.12 16 31 H 0.07 1.64 7.36 -2.39 -0.02 1.62 16 32 H 0.12 2.67 8.06 -2.39 -0.02 2.65 16 33 H 0.35 11.44 7.64 -89.69 -0.69 10.75 16 34 H 0.06 0.86 7.35 -2.39 -0.02 0.84 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.40 4.25 9.12 -74.06 -0.68 3.57 16 37 H 0.05 1.55 7.39 -2.38 -0.02 1.53 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.41 8.85 6.17 -92.71 -0.57 8.28 16 40 H 0.15 2.43 6.40 -2.91 -0.02 2.41 16 41 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 43 H 0.13 3.49 7.65 -2.91 -0.02 3.47 16 Total: -1.00 -75.02 375.62 -1.99 -77.02 By element: Atomic # 1 Polarization: 46.71 SS G_CDS: -1.55 Total: 45.16 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 5.13 Total: 19.54 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -6.46 Total: -116.32 kcal Atomic # 8 Polarization: -64.74 SS G_CDS: -1.91 Total: -66.64 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -75.02 -1.99 -77.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734361449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.079 kcal (2) G-P(sol) polarization free energy of solvation -75.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds