Wall clock time and date at job start Tue Mar 31 2020 23:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31879 * 119.61740 * 2 1 4 4 C 1.31857 * 121.72569 * 180.02562 * 3 2 1 5 5 C 1.38224 * 120.76155 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16347 * 0.02562 * 5 4 3 7 7 C 1.38181 * 119.61258 * 180.27922 * 2 1 3 8 8 C 1.50699 * 120.42260 * 359.97438 * 7 2 1 9 9 N 1.46897 * 109.47245 * 80.27482 * 8 7 2 10 10 C 1.46892 * 111.00103 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47115 * 324.99459 * 10 9 8 12 12 C 1.53004 * 109.47523 * 84.99766 * 10 9 8 13 13 O 1.42903 * 109.46839 * 64.99778 * 12 10 9 14 14 C 1.53005 * 109.47016 * 204.99918 * 10 9 8 15 15 N 1.46496 * 109.47380 * 55.00172 * 14 10 9 16 16 C 1.34766 * 120.00450 * 180.02562 * 15 14 10 17 17 O 1.21287 * 119.99908 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00385 * 179.97438 * 16 15 14 19 19 S 1.81005 * 109.47333 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99970 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00049 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00063 * 180.02562 * 20 19 18 23 23 N 1.31638 * 119.99805 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46833 * 89.99641 * 24 22 20 26 26 H 1.48493 * 109.47203 * 209.99923 * 24 22 20 27 27 H 1.48500 * 109.46783 * 330.00007 * 24 22 20 28 28 H 1.09006 * 109.47215 * 89.99847 * 1 2 3 29 29 H 1.08996 * 109.47711 * 210.00032 * 1 2 3 30 30 H 1.09002 * 109.47079 * 330.00618 * 1 2 3 31 31 H 1.07997 * 119.62057 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.41893 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.78834 * 179.97438 * 6 5 4 34 34 H 1.09006 * 109.46828 * 200.27690 * 8 7 2 35 35 H 1.09008 * 109.46872 * 320.27383 * 8 7 2 36 36 H 1.00909 * 110.99951 * 303.95413 * 9 8 7 37 37 H 1.08994 * 109.47469 * 184.99758 * 12 10 9 38 38 H 1.08995 * 109.46852 * 305.00354 * 12 10 9 39 39 H 0.96696 * 113.99848 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.47023 * 174.99911 * 14 10 9 41 41 H 1.08991 * 109.47071 * 294.99518 * 14 10 9 42 42 H 0.97005 * 119.99310 * 359.97438 * 15 14 10 43 43 H 1.09000 * 109.46916 * 299.99734 * 18 16 15 44 44 H 1.08991 * 109.47531 * 59.99557 * 18 16 15 45 45 H 0.96998 * 119.99767 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 -0.0005 5 6 4.2266 0.0340 -0.0005 6 6 3.5765 -1.1904 -0.0005 7 6 2.1898 -1.2013 -0.0059 8 6 1.4371 -2.5069 -0.0116 9 7 0.9893 -2.8079 -1.3779 10 6 0.2496 -4.0762 -1.4221 11 1 0.6820 -4.7741 -0.7051 12 6 -1.2172 -3.8239 -1.0672 13 8 -1.8156 -3.0021 -2.0715 14 6 0.3391 -4.6700 -2.8293 15 7 1.7461 -4.8007 -3.2158 16 6 2.0693 -5.3040 -4.4234 17 8 1.1953 -5.6492 -5.1902 18 6 3.5167 -5.4379 -4.8212 19 16 3.6224 -6.1391 -6.4865 20 6 5.3721 -6.1827 -6.6896 21 1 6.0167 -5.8318 -5.8971 22 6 5.9221 -6.6670 -7.8683 23 7 5.1366 -7.0942 -8.8343 24 14 7.7771 -6.7126 -8.0839 25 1 8.3002 -8.0142 -7.5964 26 1 8.1125 -6.5515 -9.5215 27 1 8.3932 -5.6085 -7.3051 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 3.9753 2.1528 -0.0009 32 1 5.3056 0.0802 -0.0013 33 1 4.1367 -2.1137 -0.0010 34 1 2.0910 -3.3048 0.3406 35 1 0.5711 -2.4299 0.6459 36 1 0.4339 -2.0526 -1.7511 37 1 -1.7467 -4.7750 -1.0130 38 1 -1.2760 -3.3198 -0.1027 39 1 -2.7476 -2.8007 -1.9110 40 1 -0.1333 -5.6523 -2.8399 41 1 -0.1718 -4.0137 -3.5337 42 1 2.4451 -4.5243 -2.6026 43 1 3.9888 -4.4554 -4.8104 44 1 4.0278 -6.0942 -4.1170 45 1 5.5209 -7.4330 -9.6579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734363684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:12 Heat of formation + Delta-G solvation = -54.754189 kcal Electronic energy + Delta-G solvation = -26415.165316 eV Core-core repulsion = 22558.634081 eV Total energy + Delta-G solvation = -3856.531234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72923 -39.29200 -38.20153 -36.04958 -34.43637 -33.30425 -32.63341 -32.37338 -30.17755 -28.86634 -28.00445 -25.81911 -25.51964 -25.06453 -22.86361 -21.81176 -21.14790 -20.10547 -18.05548 -17.72348 -17.12452 -16.83523 -16.38236 -16.15583 -15.94174 -15.31024 -15.09787 -14.88585 -14.76313 -14.66075 -14.30970 -13.84096 -13.73221 -13.62952 -13.35722 -13.03700 -12.95521 -12.68137 -12.60479 -12.53341 -12.42703 -12.03372 -11.91559 -11.49523 -11.39501 -11.02385 -10.96983 -10.71927 -10.49185 -10.05306 -9.75640 -9.72937 -9.26212 -9.18788 -9.01828 -8.77647 -8.62823 -8.15559 -6.42816 -6.16451 -3.85987 0.76203 0.99717 3.13598 3.25280 3.27578 3.31475 3.34861 3.39787 3.67690 3.87745 3.96503 4.04703 4.25782 4.33377 4.43458 4.49628 4.56548 4.64784 4.69833 4.88631 4.95747 5.08924 5.10647 5.17868 5.18492 5.21081 5.24302 5.28070 5.33624 5.37118 5.66296 5.69132 5.79412 5.86956 5.96145 6.00171 6.07600 6.24684 6.39220 6.56136 6.82471 7.02760 7.18428 7.64629 7.69415 7.96006 8.40522 8.80972 9.28736 10.91019 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.002549 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.799364 B =10981.640660 C =13038.961427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.133 3.867 3 N -0.487 5.487 4 C 0.102 3.898 5 C -0.178 4.178 6 C -0.053 4.053 7 C -0.134 4.134 8 C 0.100 3.900 9 N -0.673 5.673 10 C 0.078 3.922 11 H 0.096 0.904 12 C 0.047 3.953 13 O -0.564 6.564 14 C 0.138 3.862 15 N -0.725 5.725 16 C 0.530 3.470 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.356 0.644 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.381 0.619 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.401 0.599 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.155 12.712 25.462 30.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.006 4.006 3 N -0.196 5.196 4 C -0.056 4.056 5 C -0.198 4.198 6 C -0.079 4.079 7 C -0.136 4.136 8 C -0.029 4.029 9 N -0.306 5.306 10 C -0.033 4.033 11 H 0.114 0.886 12 C -0.033 4.033 13 O -0.370 6.370 14 C 0.013 3.987 15 N -0.379 5.379 16 C 0.315 3.685 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.172 0.828 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.177 0.823 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.229 0.771 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.236 0.764 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.919 12.518 23.555 28.823 hybrid contribution 1.783 0.049 1.745 2.496 sum -9.136 12.567 25.300 29.690 Atomic orbital electron populations 1.20789 0.89220 1.03204 1.03397 1.21119 0.96797 0.87968 0.94669 1.67516 1.10159 1.29120 1.12785 1.22746 0.89406 0.98587 0.94826 1.22162 1.01665 0.93437 1.02554 1.21514 0.93601 0.98654 0.94140 1.20516 0.94574 0.95562 1.02933 1.20892 0.97813 0.93866 0.90369 1.60532 1.45148 1.05322 1.19583 1.21999 0.90212 0.92492 0.98575 0.88603 1.22808 0.95154 0.94774 0.90565 1.86511 1.29621 1.71748 1.49078 1.21094 0.83578 1.00026 0.94010 1.45765 1.07817 1.66293 1.18030 1.20251 0.90982 0.76403 0.80817 1.90693 1.50343 1.48054 1.50812 1.23503 0.94926 1.05172 1.06562 1.85383 1.08879 1.80902 1.08342 1.22876 0.91552 1.49021 1.04742 0.91003 1.24992 0.99112 0.94686 0.94857 1.70027 1.35088 1.39548 1.05705 0.86177 0.83289 0.78546 0.77536 1.20323 1.20787 1.19712 0.89969 0.91005 0.90452 0.82790 0.84665 0.84565 0.89832 0.93820 0.82335 0.92602 0.93471 0.77127 0.91690 0.90626 0.76446 0.89359 0.89494 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.15 36.01 0.33 -0.41 16 2 C 0.13 1.23 6.78 -82.59 -0.56 0.67 16 3 N -0.49 -5.16 10.27 -9.48 -0.10 -5.26 16 4 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 5 C -0.18 -1.42 10.11 -39.44 -0.40 -1.82 16 6 C -0.05 -0.43 9.82 -39.28 -0.39 -0.82 16 7 C -0.13 -1.11 5.41 -104.48 -0.57 -1.68 16 8 C 0.10 0.65 5.06 -4.98 -0.03 0.62 16 9 N -0.67 -5.45 5.68 -107.99 -0.61 -6.06 16 10 C 0.08 0.60 2.57 -67.71 -0.17 0.42 16 11 H 0.10 0.61 7.80 -51.93 -0.41 0.20 16 12 C 0.05 0.27 6.72 37.16 0.25 0.52 16 13 O -0.56 -3.96 12.05 -35.23 -0.42 -4.38 16 14 C 0.14 1.68 5.26 -4.04 -0.02 1.65 16 15 N -0.72 -10.31 5.39 -60.30 -0.32 -10.64 16 16 C 0.53 10.43 7.85 -10.99 -0.09 10.34 16 17 O -0.52 -12.48 15.86 5.55 0.09 -12.40 16 18 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 20 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.63 13.22 55.49 0.73 -25.90 16 24 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 28 H 0.08 0.57 7.93 -51.93 -0.41 0.16 16 29 H 0.07 0.37 6.12 -51.93 -0.32 0.05 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.08 0.48 7.95 -51.93 -0.41 0.07 16 35 H 0.04 0.23 5.63 -51.92 -0.29 -0.06 16 36 H 0.36 3.25 7.07 -39.29 -0.28 2.97 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.20 7.35 -51.93 -0.38 -0.18 16 39 H 0.38 1.10 9.12 45.56 0.42 1.52 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.11 7.39 -51.93 -0.38 0.72 16 42 H 0.40 4.80 8.14 -40.82 -0.33 4.47 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -37.75 390.48 -9.13 -46.88 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.73 Total: 5.05 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.41 Total: -5.96 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.30 Total: -47.85 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.34 Total: -16.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.75 -9.13 -46.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734363684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.875 kcal (2) G-P(sol) polarization free energy of solvation -37.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds