Wall clock time and date at job start Tue Mar 31 2020 23:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34660 * 125.80454 * 2 1 4 4 H 0.96999 * 124.85126 * 0.02562 * 3 2 1 5 5 C 1.36444 * 110.29962 * 180.30026 * 3 2 1 6 6 C 1.34487 * 108.85585 * 359.72920 * 5 3 2 7 7 C 1.36770 * 125.80223 * 179.83587 * 2 1 3 8 8 C 1.47269 * 126.94171 * 359.97377 * 7 2 1 9 9 O 1.21628 * 119.99832 * 359.71719 * 8 7 2 10 10 N 1.34773 * 120.00136 * 179.71174 * 8 7 2 11 11 C 1.46497 * 120.00304 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46952 * 35.00450 * 11 10 8 13 13 C 1.53002 * 109.47433 * 275.00881 * 11 10 8 14 14 C 1.52999 * 109.47333 * 154.99921 * 11 10 8 15 15 H 1.09000 * 109.47486 * 295.00644 * 14 11 10 16 16 C 1.53006 * 109.46623 * 55.00472 * 14 11 10 17 17 N 1.46500 * 109.46944 * 175.00212 * 14 11 10 18 18 C 1.34781 * 119.99732 * 155.00564 * 17 14 11 19 19 O 1.21283 * 119.99585 * 359.97438 * 18 17 14 20 20 C 1.50697 * 119.99747 * 179.97438 * 18 17 14 21 21 S 1.81010 * 109.46802 * 179.97438 * 20 18 17 22 22 C 1.76205 * 99.99832 * 179.97438 * 21 20 18 23 23 H 1.07995 * 119.99715 * 0.02562 * 22 21 20 24 24 C 1.38798 * 120.00013 * 179.97438 * 22 21 20 25 25 N 1.31629 * 120.00139 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99630 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46957 * 89.99891 * 26 24 22 28 28 H 1.48507 * 109.46936 * 209.99484 * 26 24 22 29 29 H 1.48495 * 109.47562 * 329.99429 * 26 24 22 30 30 H 1.08989 * 109.47348 * 270.16578 * 1 2 3 31 31 H 1.08998 * 109.46968 * 30.17005 * 1 2 3 32 32 H 1.09004 * 109.46901 * 150.16547 * 1 2 3 33 33 H 1.08002 * 125.57249 * 179.74970 * 5 3 2 34 34 H 1.08001 * 126.83165 * 179.97438 * 6 5 3 35 35 H 0.97000 * 119.99883 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47381 * 59.98967 * 13 11 10 37 37 H 1.08993 * 109.47092 * 179.97438 * 13 11 10 38 38 H 1.09006 * 109.46455 * 299.99230 * 13 11 10 39 39 H 1.09001 * 109.47002 * 179.97438 * 16 14 11 40 40 H 1.08993 * 109.46955 * 300.00075 * 16 14 11 41 41 H 1.09000 * 109.47050 * 59.99904 * 16 14 11 42 42 H 0.96998 * 120.00364 * 335.00076 * 17 14 11 43 43 H 1.08998 * 109.47252 * 299.99651 * 20 18 17 44 44 H 1.09004 * 109.47120 * 60.00384 * 20 18 17 45 45 H 0.96999 * 119.99711 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6095 0.7274 -0.0067 6 6 3.6882 -0.6152 -0.0051 7 6 2.3071 -1.1093 0.0032 8 6 1.8702 -2.5157 0.0077 9 8 0.6839 -2.7839 0.0142 10 7 2.7849 -3.5054 0.0046 11 6 2.3504 -4.9045 0.0097 12 1 1.4354 -5.0029 -0.5746 13 6 2.0867 -5.3515 1.4491 14 6 3.4442 -5.7805 -0.6042 15 1 3.5699 -5.5214 -1.6555 16 6 4.7610 -5.5480 0.1394 17 7 3.0617 -7.1902 -0.4910 18 6 3.5605 -8.0953 -1.3562 19 8 4.3256 -7.7426 -2.2287 20 6 3.1675 -9.5455 -1.2394 21 16 3.9958 -10.5011 -2.5344 22 6 3.3758 -12.1100 -2.1713 23 1 2.6928 -12.2521 -1.3468 24 6 3.7642 -13.1945 -2.9455 25 7 3.3006 -14.3963 -2.6746 26 14 4.9450 -12.9485 -4.3720 27 1 6.3412 -13.1078 -3.8919 28 1 4.6656 -13.9573 -5.4254 29 1 4.7667 -11.5851 -4.9327 30 1 -0.3633 0.0030 1.0275 31 1 -0.3633 0.8884 -0.5165 32 1 -0.3633 -0.8915 -0.5113 33 1 4.4498 1.4059 -0.0120 34 1 4.5890 -1.2110 -0.0096 35 1 3.7310 -3.2915 -0.0002 36 1 1.3075 -4.7273 1.8864 37 1 1.7630 -6.3922 1.4528 38 1 3.0017 -5.2531 2.0333 39 1 5.5402 -6.1725 -0.2977 40 1 5.0455 -4.4993 0.0552 41 1 4.6353 -5.8071 1.1907 42 1 2.4496 -7.4722 0.2066 43 1 3.4642 -9.9247 -0.2615 44 1 2.0876 -9.6396 -1.3534 45 1 3.5725 -15.1543 -3.2154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734694832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:29 Heat of formation + Delta-G solvation = -36.258018 kcal Electronic energy + Delta-G solvation = -26206.641944 eV Core-core repulsion = 22350.912764 eV Total energy + Delta-G solvation = -3855.729180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63816 -40.07404 -39.05978 -36.86180 -34.03074 -32.42274 -32.01715 -31.84641 -30.87677 -29.61146 -28.56410 -26.77549 -25.60552 -24.98138 -23.09823 -21.25915 -20.64855 -19.97772 -19.86236 -18.12650 -17.92265 -16.75234 -16.46009 -16.09932 -15.64339 -15.40753 -15.09763 -14.92340 -14.71943 -14.37096 -14.21443 -13.85026 -13.79839 -13.48384 -13.35224 -13.16664 -13.07702 -12.92472 -12.80224 -12.71771 -12.40598 -12.04288 -11.97422 -11.94027 -11.25664 -11.18582 -11.03125 -10.99337 -10.58638 -10.03233 -9.84326 -9.52282 -9.37186 -9.17621 -9.03602 -8.97288 -8.57405 -8.48445 -6.89943 -6.27223 -3.98831 1.42244 2.02476 2.58617 2.77737 2.96849 3.09979 3.32837 3.34130 3.43800 3.52080 3.71506 4.34614 4.37811 4.41646 4.57194 4.69959 4.75265 4.79316 4.81868 4.96886 5.11826 5.12811 5.18593 5.25305 5.25871 5.27907 5.43974 5.49725 5.53301 5.57450 5.73275 5.78428 5.81802 5.85706 5.95273 6.03727 6.20437 6.28358 6.34703 6.51321 6.56448 6.99693 7.38613 7.60625 7.95863 8.15294 8.43639 8.49436 9.18969 10.81988 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.001867 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.340545 B =14997.452619 C =15296.065369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.107 3.893 3 N -0.554 5.554 4 H 0.416 0.584 5 C -0.017 4.017 6 C -0.168 4.168 7 C -0.238 4.238 8 C 0.594 3.406 9 O -0.549 6.549 10 N -0.719 5.719 11 C 0.138 3.862 12 H 0.095 0.905 13 C -0.167 4.167 14 C 0.138 3.862 15 H 0.094 0.906 16 C -0.167 4.167 17 N -0.729 5.729 18 C 0.533 3.467 19 O -0.518 6.518 20 C -0.124 4.124 21 S -0.141 6.141 22 C -0.521 4.521 23 H 0.088 0.912 24 C 0.095 3.905 25 N -0.880 5.880 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 33.331 10.082 34.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.011 4.011 3 N -0.149 5.149 4 H 0.253 0.747 5 C -0.144 4.144 6 C -0.192 4.192 7 C -0.248 4.248 8 C 0.383 3.617 9 O -0.428 6.428 10 N -0.372 5.372 11 C 0.033 3.967 12 H 0.113 0.887 13 C -0.225 4.225 14 C 0.032 3.968 15 H 0.112 0.888 16 C -0.226 4.226 17 N -0.386 5.386 18 C 0.319 3.681 19 O -0.392 6.392 20 C -0.275 4.275 21 S 0.085 5.915 22 C -0.669 4.669 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.517 5.517 26 Si 0.682 3.318 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.159 1.159 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.187 0.813 34 H 0.163 0.837 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.236 0.764 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.205 33.639 8.575 34.736 hybrid contribution -0.171 -0.199 0.818 0.859 sum -1.375 33.440 9.393 34.762 Atomic orbital electron populations 1.20594 0.86898 1.04354 1.03530 1.20379 0.93795 0.85630 1.01265 1.41624 1.06307 1.08468 1.58526 0.74743 1.21739 0.85677 0.96500 1.10481 1.22045 0.95766 0.93747 1.07665 1.20101 0.93278 0.91980 1.19391 1.17324 0.85250 0.84032 0.75085 1.90743 1.16609 1.84381 1.51081 1.45816 1.09992 1.05190 1.76161 1.21059 0.98012 0.80281 0.97370 0.88653 1.22249 1.02573 1.01578 0.96133 1.20988 0.93325 0.81172 1.01330 0.88813 1.22261 0.97719 1.01523 1.01085 1.46042 1.50579 1.06888 1.35057 1.20289 0.79966 0.87292 0.80531 1.90697 1.34184 1.80542 1.33788 1.23285 1.05191 0.93600 1.05437 1.84780 1.62843 1.04651 1.39244 1.22322 1.33538 0.90568 1.20447 0.89367 1.24715 0.95490 0.94089 0.97044 1.69940 1.43218 0.98974 1.39553 0.86733 0.81795 0.80701 0.82602 1.19232 1.19970 1.15918 0.90379 0.91826 0.87884 0.81305 0.83723 0.76334 0.91591 0.91521 0.91778 0.91158 0.92156 0.91786 0.76404 0.88442 0.88378 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.88 36.00 0.36 -0.30 16 2 C 0.11 0.85 7.17 -81.88 -0.59 0.27 16 3 N -0.55 -2.84 5.90 -9.11 -0.05 -2.90 16 4 H 0.42 0.80 8.96 -40.82 -0.37 0.43 16 5 C -0.02 -0.09 11.89 -16.83 -0.20 -0.29 16 6 C -0.17 -1.20 10.56 -37.50 -0.40 -1.59 16 7 C -0.24 -2.25 6.29 -103.35 -0.65 -2.90 16 8 C 0.59 6.67 7.77 -12.59 -0.10 6.57 16 9 O -0.55 -7.66 14.48 5.25 0.08 -7.58 16 10 N -0.72 -6.63 4.98 -54.93 -0.27 -6.91 16 11 C 0.14 1.36 2.62 -67.93 -0.18 1.18 16 12 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 13 C -0.17 -1.44 9.00 37.16 0.33 -1.11 16 14 C 0.14 1.51 2.62 -67.93 -0.18 1.34 16 15 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 16 C -0.17 -1.60 9.00 37.16 0.33 -1.26 16 17 N -0.73 -9.09 4.99 -53.80 -0.27 -9.35 16 18 C 0.53 9.27 7.81 -10.98 -0.09 9.19 16 19 O -0.52 -10.90 15.52 5.56 0.09 -10.81 16 20 C -0.12 -2.39 6.16 36.00 0.22 -2.16 16 21 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 22 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 23 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 24 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 25 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 26 Si 0.86 21.85 27.74 -169.99 -4.71 17.14 16 27 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 28 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 30 H 0.08 0.49 8.14 -51.94 -0.42 0.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 0.94 6.47 -51.93 -0.34 0.60 16 33 H 0.17 0.38 8.06 -52.49 -0.42 -0.04 16 34 H 0.15 0.76 7.70 -52.49 -0.40 0.35 16 35 H 0.40 2.92 5.70 -40.82 -0.23 2.69 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.51 6.29 -51.93 -0.33 0.18 16 38 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.43 6.29 -51.93 -0.33 0.11 16 41 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 42 H 0.40 3.99 6.58 -40.82 -0.27 3.72 16 43 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 44 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -37.00 382.91 -7.77 -44.78 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.27 Total: 4.40 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.91 Total: -3.11 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.18 Total: -45.01 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.16 Total: -18.39 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.00 -7.77 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734694832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.521 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds