Wall clock time and date at job start Tue Mar 31 2020 23:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34660 * 125.80454 * 2 1 4 4 H 0.96999 * 124.85126 * 0.02562 * 3 2 1 5 5 C 1.36444 * 110.29962 * 180.30026 * 3 2 1 6 6 C 1.34487 * 108.85585 * 359.72920 * 5 3 2 7 7 C 1.36770 * 125.80223 * 179.83587 * 2 1 3 8 8 C 1.47269 * 126.94171 * 359.97377 * 7 2 1 9 9 O 1.21628 * 119.99832 * 359.71719 * 8 7 2 10 10 N 1.34773 * 120.00136 * 179.71174 * 8 7 2 11 11 C 1.46497 * 120.00304 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46952 * 35.00450 * 11 10 8 13 13 C 1.53002 * 109.47433 * 275.00881 * 11 10 8 14 14 C 1.52999 * 109.47333 * 154.99921 * 11 10 8 15 15 H 1.09000 * 109.47486 * 295.00644 * 14 11 10 16 16 C 1.53006 * 109.46623 * 55.00472 * 14 11 10 17 17 N 1.46500 * 109.46944 * 175.00212 * 14 11 10 18 18 C 1.34781 * 119.99732 * 155.00564 * 17 14 11 19 19 O 1.21283 * 119.99585 * 359.97438 * 18 17 14 20 20 C 1.50697 * 119.99747 * 179.97438 * 18 17 14 21 21 S 1.81010 * 109.46802 * 179.97438 * 20 18 17 22 22 C 1.76205 * 99.99832 * 179.97438 * 21 20 18 23 23 H 1.07995 * 119.99715 * 0.02562 * 22 21 20 24 24 C 1.38798 * 120.00013 * 179.97438 * 22 21 20 25 25 N 1.31629 * 120.00139 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99630 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46957 * 89.99891 * 26 24 22 28 28 H 1.48507 * 109.46936 * 209.99484 * 26 24 22 29 29 H 1.48495 * 109.47562 * 329.99429 * 26 24 22 30 30 H 1.08989 * 109.47348 * 270.16578 * 1 2 3 31 31 H 1.08998 * 109.46968 * 30.17005 * 1 2 3 32 32 H 1.09004 * 109.46901 * 150.16547 * 1 2 3 33 33 H 1.08002 * 125.57249 * 179.74970 * 5 3 2 34 34 H 1.08001 * 126.83165 * 179.97438 * 6 5 3 35 35 H 0.97000 * 119.99883 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47381 * 59.98967 * 13 11 10 37 37 H 1.08993 * 109.47092 * 179.97438 * 13 11 10 38 38 H 1.09006 * 109.46455 * 299.99230 * 13 11 10 39 39 H 1.09001 * 109.47002 * 179.97438 * 16 14 11 40 40 H 1.08993 * 109.46955 * 300.00075 * 16 14 11 41 41 H 1.09000 * 109.47050 * 59.99904 * 16 14 11 42 42 H 0.96998 * 120.00364 * 335.00076 * 17 14 11 43 43 H 1.08998 * 109.47252 * 299.99651 * 20 18 17 44 44 H 1.09004 * 109.47120 * 60.00384 * 20 18 17 45 45 H 0.96999 * 119.99711 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6095 0.7274 -0.0067 6 6 3.6882 -0.6152 -0.0051 7 6 2.3071 -1.1093 0.0032 8 6 1.8702 -2.5157 0.0077 9 8 0.6839 -2.7839 0.0142 10 7 2.7849 -3.5054 0.0046 11 6 2.3504 -4.9045 0.0097 12 1 1.4354 -5.0029 -0.5746 13 6 2.0867 -5.3515 1.4491 14 6 3.4442 -5.7805 -0.6042 15 1 3.5699 -5.5214 -1.6555 16 6 4.7610 -5.5480 0.1394 17 7 3.0617 -7.1902 -0.4910 18 6 3.5605 -8.0953 -1.3562 19 8 4.3256 -7.7426 -2.2287 20 6 3.1675 -9.5455 -1.2394 21 16 3.9958 -10.5011 -2.5344 22 6 3.3758 -12.1100 -2.1713 23 1 2.6928 -12.2521 -1.3468 24 6 3.7642 -13.1945 -2.9455 25 7 3.3006 -14.3963 -2.6746 26 14 4.9450 -12.9485 -4.3720 27 1 6.3412 -13.1078 -3.8919 28 1 4.6656 -13.9573 -5.4254 29 1 4.7667 -11.5851 -4.9327 30 1 -0.3633 0.0030 1.0275 31 1 -0.3633 0.8884 -0.5165 32 1 -0.3633 -0.8915 -0.5113 33 1 4.4498 1.4059 -0.0120 34 1 4.5890 -1.2110 -0.0096 35 1 3.7310 -3.2915 -0.0002 36 1 1.3075 -4.7273 1.8864 37 1 1.7630 -6.3922 1.4528 38 1 3.0017 -5.2531 2.0333 39 1 5.5402 -6.1725 -0.2977 40 1 5.0455 -4.4993 0.0552 41 1 4.6353 -5.8071 1.1907 42 1 2.4496 -7.4722 0.2066 43 1 3.4642 -9.9247 -0.2615 44 1 2.0876 -9.6396 -1.3534 45 1 3.5725 -15.1543 -3.2154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734694832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:29 Heat of formation + Delta-G solvation = -63.786285 kcal Electronic energy + Delta-G solvation = -26207.835660 eV Core-core repulsion = 22350.912764 eV Total energy + Delta-G solvation = -3856.922896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.16043 -41.13597 -40.11692 -37.91083 -35.08924 -34.65916 -32.83870 -32.42106 -31.76321 -30.45651 -29.79103 -27.84003 -27.31106 -25.79929 -23.89576 -22.08481 -21.52484 -20.82634 -20.72069 -19.89623 -18.61199 -18.10171 -17.44267 -17.09685 -16.99981 -16.58500 -16.41911 -16.15872 -15.80922 -15.42700 -15.15020 -14.94215 -14.85108 -14.70485 -14.37275 -14.16648 -13.98562 -13.64355 -13.58922 -13.41020 -13.37852 -13.32419 -13.20196 -13.00063 -12.82941 -12.58577 -12.46822 -12.06576 -11.92162 -11.84564 -11.16004 -11.02042 -10.87171 -10.52501 -10.20957 -10.15282 -9.72468 -9.09312 -8.98060 -8.50432 -6.21005 0.76317 0.99075 1.32161 1.46849 1.54369 1.56826 1.57267 1.96521 2.25621 2.32337 2.58906 2.62268 2.75309 2.87768 3.49563 3.81226 3.88548 3.93621 4.04728 4.13710 4.24977 4.30799 4.34053 4.39710 4.48002 4.49942 4.67799 4.70986 4.72905 4.74107 4.94425 4.95604 4.99289 5.08584 5.16750 5.29316 5.40801 5.42387 5.55521 5.71869 5.82409 6.00345 6.12795 6.43020 6.60736 6.71989 6.94729 7.17890 7.36515 8.61908 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.001867 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.340545 B =14997.452619 C =15296.065369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.096 3.904 3 N -0.540 5.540 4 H 0.432 0.568 5 C -0.005 4.005 6 C -0.187 4.187 7 C -0.271 4.271 8 C 0.587 3.413 9 O -0.586 6.586 10 N -0.709 5.709 11 C 0.147 3.853 12 H 0.074 0.926 13 C -0.162 4.162 14 C 0.142 3.858 15 H 0.073 0.927 16 C -0.163 4.163 17 N -0.707 5.707 18 C 0.539 3.461 19 O -0.558 6.558 20 C -0.113 4.113 21 S -0.174 6.174 22 C -0.529 4.529 23 H 0.062 0.938 24 C 0.045 3.955 25 N -0.917 5.917 26 Si 0.915 3.085 27 H -0.261 1.261 28 H -0.260 1.260 29 H -0.237 1.237 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.205 0.795 34 H 0.160 0.840 35 H 0.411 0.589 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.415 0.585 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 36.054 10.831 37.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.023 4.023 3 N -0.137 5.137 4 H 0.272 0.728 5 C -0.132 4.132 6 C -0.210 4.210 7 C -0.282 4.282 8 C 0.378 3.622 9 O -0.468 6.468 10 N -0.362 5.362 11 C 0.041 3.959 12 H 0.092 0.908 13 C -0.221 4.221 14 C 0.036 3.964 15 H 0.091 0.909 16 C -0.221 4.221 17 N -0.362 5.362 18 C 0.325 3.675 19 O -0.435 6.435 20 C -0.264 4.264 21 S 0.053 5.947 22 C -0.677 4.677 23 H 0.080 0.920 24 C -0.161 4.161 25 N -0.555 5.555 26 Si 0.737 3.263 27 H -0.186 1.186 28 H -0.184 1.184 29 H -0.161 1.161 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.222 0.778 34 H 0.177 0.823 35 H 0.249 0.751 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.254 0.746 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.039 36.401 9.368 37.587 hybrid contribution -0.613 -0.899 0.700 1.293 sum -0.652 35.502 10.068 36.908 Atomic orbital electron populations 1.20527 0.86664 1.04188 1.03654 1.20520 0.94302 0.86275 1.01236 1.41645 1.06134 1.08733 1.57174 0.72797 1.22318 0.86346 0.96502 1.08065 1.22311 0.95184 0.94842 1.08683 1.20213 0.95097 0.91315 1.21536 1.17716 0.84906 0.85125 0.74463 1.90717 1.18107 1.85032 1.52985 1.45708 1.10377 1.04576 1.75581 1.20877 0.96542 0.80575 0.97885 0.90795 1.22221 1.02949 1.01915 0.94982 1.21031 0.94705 0.79969 1.00675 0.90879 1.22224 0.95610 1.02833 1.01400 1.45817 1.49526 1.06965 1.33925 1.19922 0.79818 0.87007 0.80789 1.90689 1.36247 1.80922 1.35681 1.23283 1.05296 0.94009 1.03785 1.84690 1.63939 1.03514 1.42565 1.22472 1.32932 0.92674 1.19592 0.91950 1.25573 0.97079 0.93892 0.99524 1.70019 1.44631 0.99861 1.40970 0.85859 0.79837 0.80739 0.79880 1.18593 1.18437 1.16095 0.90116 0.89310 0.90649 0.77820 0.82276 0.75094 0.92757 0.90391 0.90273 0.93443 0.89556 0.90151 0.74614 0.86599 0.86931 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.88 71.24 0.70 -0.54 16 2 C 0.10 1.44 7.17 41.78 0.30 1.74 16 3 N -0.54 -4.22 5.90 -182.73 -1.08 -5.30 16 4 H 0.43 0.40 8.96 -92.71 -0.83 -0.43 16 5 C 0.00 -0.04 11.89 83.12 0.99 0.95 16 6 C -0.19 -2.28 10.56 23.62 0.25 -2.03 16 7 C -0.27 -4.97 6.29 -19.04 -0.12 -5.09 16 8 C 0.59 13.28 7.77 86.62 0.67 13.95 16 9 O -0.59 -17.03 14.48 -4.12 -0.06 -17.09 16 10 N -0.71 -12.58 4.98 -445.95 -2.22 -14.80 16 11 C 0.15 2.78 2.62 44.99 0.12 2.90 16 12 H 0.07 1.76 7.58 -2.38 -0.02 1.74 16 13 C -0.16 -2.54 9.00 71.98 0.65 -1.89 16 14 C 0.14 2.95 2.62 44.99 0.12 3.07 16 15 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16 16 C -0.16 -2.77 9.00 71.98 0.65 -2.12 16 17 N -0.71 -16.56 4.99 -442.52 -2.21 -18.77 16 18 C 0.54 18.23 7.81 87.66 0.68 18.92 16 19 O -0.56 -23.32 15.52 -3.04 -0.05 -23.37 16 20 C -0.11 -4.22 6.16 71.23 0.44 -3.78 16 21 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 22 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 23 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 24 C 0.04 2.63 5.50 84.86 0.47 3.10 16 25 N -0.92 -56.06 13.97 21.65 0.30 -55.76 16 26 Si 0.91 45.20 27.74 68.60 1.90 47.10 16 27 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 29 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.46 6.47 -2.38 -0.02 1.45 16 33 H 0.21 0.01 8.06 -2.91 -0.02 -0.01 16 34 H 0.16 1.29 7.70 -2.91 -0.02 1.26 16 35 H 0.41 5.35 5.70 -92.71 -0.53 4.83 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.02 6.29 -2.39 -0.02 1.01 16 38 H 0.08 1.01 6.57 -2.38 -0.02 1.00 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.09 1.01 6.29 -2.39 -0.02 1.00 16 41 H 0.08 1.12 6.56 -2.39 -0.02 1.11 16 42 H 0.41 7.36 6.58 -92.71 -0.61 6.75 16 43 H 0.12 3.93 8.14 -2.40 -0.02 3.91 16 44 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -82.53 382.91 1.19 -81.35 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.95 Total: 17.48 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 6.60 Total: -1.03 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -5.21 Total: -94.62 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.11 Total: -40.46 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -82.53 1.19 -81.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734694832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.561 kcal (2) G-P(sol) polarization free energy of solvation -82.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds