Wall clock time and date at job start Tue Mar 31 2020 23:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34659 * 125.79879 * 2 1 4 4 H 0.96993 * 124.85265 * 0.02562 * 3 2 1 5 5 C 1.36455 * 110.29092 * 180.29956 * 3 2 1 6 6 C 1.34477 * 108.85741 * 359.72885 * 5 3 2 7 7 C 1.36769 * 125.79855 * 179.83308 * 2 1 3 8 8 C 1.47256 * 126.94303 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00355 * 359.71526 * 8 7 2 10 10 N 1.34777 * 120.00032 * 179.71081 * 8 7 2 11 11 C 1.46500 * 120.00075 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47085 * 35.00197 * 11 10 8 13 13 C 1.53001 * 109.46826 * 274.99922 * 11 10 8 14 14 C 1.53000 * 109.47023 * 155.00453 * 11 10 8 15 15 H 1.09002 * 109.47398 * 59.99929 * 14 11 10 16 16 C 1.52997 * 109.47060 * 299.99760 * 14 11 10 17 17 N 1.46500 * 109.47023 * 179.97438 * 14 11 10 18 18 C 1.34777 * 120.00075 * 204.99547 * 17 14 11 19 19 O 1.21287 * 119.99865 * 0.02562 * 18 17 14 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 14 21 21 S 1.81001 * 109.47021 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99692 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00491 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99834 * 179.97438 * 22 21 20 25 25 N 1.31625 * 120.00150 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00062 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46924 * 60.00101 * 26 24 22 28 28 H 1.48498 * 109.47258 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47062 * 300.00346 * 26 24 22 30 30 H 1.08997 * 109.47484 * 270.17226 * 1 2 3 31 31 H 1.09002 * 109.47450 * 30.16730 * 1 2 3 32 32 H 1.08997 * 109.47485 * 150.16841 * 1 2 3 33 33 H 1.08003 * 125.56937 * 179.74478 * 5 3 2 34 34 H 1.08002 * 126.83554 * 179.97438 * 6 5 3 35 35 H 0.97006 * 119.99702 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47437 * 60.00616 * 13 11 10 37 37 H 1.09001 * 109.47109 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47508 * 300.00018 * 13 11 10 39 39 H 1.09002 * 109.47153 * 300.00319 * 16 14 11 40 40 H 1.08998 * 109.47533 * 59.99948 * 16 14 11 41 41 H 1.08996 * 109.47853 * 180.02562 * 16 14 11 42 42 H 0.96997 * 120.00274 * 24.99518 * 17 14 11 43 43 H 1.08999 * 109.47169 * 300.00043 * 20 18 17 44 44 H 1.08999 * 109.47104 * 60.00393 * 20 18 17 45 45 H 0.96996 * 120.00313 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6096 0.7274 -0.0067 6 6 3.6881 -0.6151 -0.0051 7 6 2.3070 -1.1093 0.0032 8 6 1.8702 -2.5156 0.0079 9 8 0.6839 -2.7839 0.0144 10 7 2.7849 -3.5054 0.0048 11 6 2.3502 -4.9044 0.0088 12 1 1.4358 -5.0025 -0.5761 13 6 2.0859 -5.3521 1.4478 14 6 3.4445 -5.7802 -0.6048 15 1 4.3590 -5.6822 -0.0199 16 6 3.7089 -5.3325 -2.0437 17 7 3.0101 -7.1793 -0.6002 18 6 3.9250 -8.1690 -0.6032 19 8 5.1079 -7.9013 -0.6093 20 6 3.4782 -9.6082 -0.5979 21 16 4.9291 -10.6904 -0.6029 22 6 4.1368 -12.2642 -0.5948 23 1 3.0586 -12.3260 -0.5894 24 6 4.8985 -13.4246 -0.5965 25 7 6.2126 -13.3493 -0.6036 26 14 4.0587 -15.0931 -0.5872 27 1 3.2035 -15.2235 -1.7942 28 1 5.0867 -16.1647 -0.5900 29 1 3.2181 -15.2174 0.6307 30 1 -0.3634 0.0031 1.0276 31 1 -0.3634 0.8885 -0.5164 32 1 -0.3634 -0.8914 -0.5112 33 1 4.4498 1.4059 -0.0121 34 1 4.5889 -1.2110 -0.0096 35 1 3.7310 -3.2914 -0.0001 36 1 1.3063 -4.7283 1.8850 37 1 1.7620 -6.3929 1.4508 38 1 3.0004 -5.2541 2.0327 39 1 2.7944 -5.4305 -2.6287 40 1 4.0323 -4.2916 -2.0468 41 1 4.4881 -5.9566 -2.4812 42 1 2.0641 -7.3934 -0.5950 43 1 2.8846 -9.8011 0.2957 44 1 2.8750 -9.8046 -1.4843 45 1 6.7449 -14.1601 -0.6051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734694834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:37 Heat of formation + Delta-G solvation = -41.284801 kcal Electronic energy + Delta-G solvation = -26146.567405 eV Core-core repulsion = 22290.620247 eV Total energy + Delta-G solvation = -3855.947158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.61210 -39.92839 -38.98167 -36.63396 -33.98753 -32.41171 -31.97132 -31.81111 -30.79519 -29.86093 -28.44121 -26.72534 -25.46573 -24.24420 -22.90737 -21.28946 -20.69010 -20.41936 -19.71187 -18.08814 -17.86661 -16.66269 -16.57246 -15.71638 -15.55221 -15.40152 -14.96678 -14.78560 -14.63127 -14.19024 -13.98160 -13.82801 -13.71751 -13.47827 -13.40997 -13.15502 -13.06282 -12.91405 -12.66663 -12.40521 -12.37359 -11.94338 -11.93506 -11.71726 -11.44071 -11.02826 -11.02190 -10.81059 -10.73398 -10.02422 -9.80548 -9.41581 -9.34532 -9.17399 -9.04391 -8.86564 -8.54869 -8.22330 -6.48043 -6.19854 -3.90263 1.44274 2.05261 2.62833 2.92920 3.10589 3.22505 3.25195 3.29874 3.35521 3.41211 3.82716 4.22380 4.38252 4.43413 4.60172 4.80618 4.84124 4.87133 5.05633 5.14557 5.15276 5.17580 5.26573 5.35811 5.42832 5.47071 5.58448 5.59746 5.61693 5.71134 5.78386 5.85032 5.91471 5.99859 6.11559 6.16742 6.21840 6.32453 6.37724 6.53742 6.66452 7.01801 7.42443 7.61221 7.71693 8.17915 8.36897 8.62541 9.25450 10.87493 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034825 B = 0.001783 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.824299 B =15698.220105 C =16170.606402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.107 3.893 3 N -0.554 5.554 4 H 0.416 0.584 5 C -0.017 4.017 6 C -0.167 4.167 7 C -0.237 4.237 8 C 0.595 3.405 9 O -0.551 6.551 10 N -0.717 5.717 11 C 0.139 3.861 12 H 0.093 0.907 13 C -0.163 4.163 14 C 0.138 3.862 15 H 0.092 0.908 16 C -0.163 4.163 17 N -0.730 5.730 18 C 0.536 3.464 19 O -0.516 6.516 20 C -0.154 4.154 21 S -0.059 6.059 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.401 0.599 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 30.878 1.254 32.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.012 4.012 3 N -0.150 5.150 4 H 0.252 0.748 5 C -0.144 4.144 6 C -0.191 4.191 7 C -0.247 4.247 8 C 0.385 3.615 9 O -0.430 6.430 10 N -0.368 5.368 11 C 0.034 3.966 12 H 0.111 0.889 13 C -0.221 4.221 14 C 0.032 3.968 15 H 0.110 0.890 16 C -0.221 4.221 17 N -0.385 5.385 18 C 0.322 3.678 19 O -0.390 6.390 20 C -0.304 4.304 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.187 0.813 34 H 0.164 0.836 35 H 0.236 0.764 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.580 31.139 1.250 32.323 hybrid contribution -1.808 -0.901 0.022 2.020 sum -10.388 30.238 1.273 31.997 Atomic orbital electron populations 1.20588 0.86947 1.04271 1.03524 1.20369 0.93762 0.85649 1.01374 1.41624 1.06320 1.08446 1.58570 0.74775 1.21743 0.85652 0.96524 1.10520 1.22066 0.95814 0.93743 1.07507 1.20107 0.93281 0.91995 1.19354 1.17284 0.85207 0.83969 0.75090 1.90733 1.16609 1.84384 1.51292 1.45681 1.09924 1.05231 1.75952 1.21091 0.97925 0.80225 0.97379 0.88932 1.22174 1.02316 1.01888 0.95731 1.21008 0.97578 0.81139 0.97083 0.89006 1.22181 1.02495 1.01367 0.96082 1.45940 1.09944 1.04819 1.77791 1.20287 0.85919 0.86757 0.74860 1.90698 1.16768 1.84067 1.47510 1.23536 1.07129 0.94778 1.04996 1.85374 1.03732 0.97454 1.96724 1.22835 0.95056 0.91533 1.59005 0.90965 1.24985 0.94847 0.99176 0.94541 1.70003 1.04179 1.29311 1.46826 0.86231 0.78928 0.81576 0.78805 1.19946 1.20829 1.19945 0.90401 0.91878 0.87923 0.81313 0.83626 0.76442 0.91945 0.91231 0.92224 0.92451 0.91859 0.91426 0.76692 0.89170 0.89181 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.88 36.01 0.36 -0.29 16 2 C 0.11 0.85 7.17 -81.88 -0.59 0.26 16 3 N -0.55 -2.90 5.90 -9.11 -0.05 -2.96 16 4 H 0.42 0.84 8.96 -40.82 -0.37 0.47 16 5 C -0.02 -0.10 11.89 -16.82 -0.20 -0.30 16 6 C -0.17 -1.22 10.56 -37.50 -0.40 -1.62 16 7 C -0.24 -2.27 6.29 -103.35 -0.65 -2.92 16 8 C 0.60 6.66 7.77 -12.60 -0.10 6.56 16 9 O -0.55 -7.58 14.48 5.26 0.08 -7.51 16 10 N -0.72 -6.76 4.38 -54.94 -0.24 -7.00 16 11 C 0.14 1.41 2.21 -67.93 -0.15 1.26 16 12 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 13 C -0.16 -1.68 9.33 37.16 0.35 -1.34 16 14 C 0.14 1.58 2.21 -67.93 -0.15 1.43 16 15 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 16 C -0.16 -1.82 9.33 37.16 0.35 -1.47 16 17 N -0.73 -9.50 4.38 -53.81 -0.24 -9.73 16 18 C 0.54 9.71 7.81 -10.99 -0.09 9.63 16 19 O -0.52 -11.34 15.52 5.55 0.09 -11.26 16 20 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 21 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 22 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 23 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 24 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 26 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.92 6.47 -51.93 -0.34 0.58 16 33 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16 34 H 0.15 0.82 7.70 -52.49 -0.40 0.41 16 35 H 0.40 3.09 7.51 -40.82 -0.31 2.78 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.70 7.44 -51.93 -0.39 0.31 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.40 4.19 8.39 -40.82 -0.34 3.84 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -36.97 393.30 -8.46 -45.42 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.66 Total: 4.52 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.85 Total: -4.59 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.20 Total: -45.13 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.16 Total: -18.76 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.97 -8.46 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734694834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.137 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds