Wall clock time and date at job start Tue Mar 31 2020 23:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34664 * 125.79840 * 2 1 4 4 H 0.96992 * 124.85565 * 0.02562 * 3 2 1 5 5 C 1.36448 * 110.29566 * 180.29276 * 3 2 1 6 6 C 1.34493 * 108.85812 * 359.74434 * 5 3 2 7 7 C 1.36768 * 125.80410 * 179.85853 * 2 1 3 8 8 C 1.47263 * 126.93909 * 359.97438 * 7 2 1 9 9 O 1.21623 * 120.00126 * 359.70796 * 8 7 2 10 10 N 1.34777 * 119.99630 * 179.70482 * 8 7 2 11 11 C 1.46499 * 119.99665 * 179.72408 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11 15 15 C 1.46494 * 119.99955 * 90.00392 * 14 13 12 16 16 C 1.34777 * 119.99692 * 269.99967 * 14 13 12 17 17 O 1.21279 * 120.00487 * 0.02562 * 16 14 13 18 18 C 1.50703 * 119.99892 * 180.02562 * 16 14 13 19 19 S 1.81002 * 109.47288 * 180.02562 * 18 16 14 20 20 C 1.76201 * 99.99863 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00083 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99834 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00077 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00015 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47159 * 60.00496 * 24 22 20 26 26 H 1.48500 * 109.47232 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47523 * 300.00749 * 24 22 20 28 28 H 1.09000 * 109.47617 * 270.13867 * 1 2 3 29 29 H 1.09003 * 109.47145 * 30.14297 * 1 2 3 30 30 H 1.09003 * 109.46917 * 150.13706 * 1 2 3 31 31 H 1.08002 * 125.57376 * 179.76591 * 5 3 2 32 32 H 1.07994 * 126.83369 * 180.02562 * 6 5 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 37 37 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 38 38 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 39 39 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 40 40 H 1.08998 * 109.47261 * 90.00116 * 15 14 13 41 41 H 1.09006 * 109.46899 * 209.99858 * 15 14 13 42 42 H 1.08991 * 109.47310 * 329.99868 * 15 14 13 43 43 H 1.09002 * 109.46734 * 300.00338 * 18 16 14 44 44 H 1.09001 * 109.47070 * 59.99937 * 18 16 14 45 45 H 0.97001 * 120.00067 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0065 6 6 3.6882 -0.6151 -0.0052 7 6 2.3071 -1.1092 0.0027 8 6 1.8702 -2.5155 0.0067 9 8 0.6840 -2.7838 0.0133 10 7 2.7850 -3.5053 0.0031 11 6 2.3505 -4.9043 0.0132 12 6 3.5768 -5.8193 0.0135 13 6 3.1229 -7.2804 0.0247 14 7 4.2972 -8.1564 0.0256 15 6 4.8893 -8.5864 1.2946 16 6 4.8326 -8.5668 -1.1412 17 8 4.3426 -8.2106 -2.1919 18 6 6.0401 -9.4685 -1.1404 19 16 6.5174 -9.8394 -2.8465 20 6 7.9106 -10.8782 -2.5554 21 1 8.2178 -11.0987 -1.5438 22 6 8.6133 -11.4130 -3.6263 23 7 8.2392 -11.1437 -4.8593 24 14 10.0907 -12.5136 -3.3179 25 1 9.6671 -13.7034 -2.5368 26 1 10.6617 -12.9513 -4.6169 27 1 11.1182 -11.7606 -2.5546 28 1 -0.3634 0.0025 1.0276 29 1 -0.3633 0.8887 -0.5161 30 1 -0.3633 -0.8912 -0.5117 31 1 4.4497 1.4061 -0.0116 32 1 4.5890 -1.2108 -0.0088 33 1 3.7311 -3.2914 -0.0018 34 1 1.7557 -5.0937 0.9069 35 1 1.7483 -5.1042 -0.8731 36 1 4.1715 -5.6300 -0.8801 37 1 4.1790 -5.6195 0.8999 38 1 2.5284 -7.4694 0.9184 39 1 2.5205 -7.4805 -0.8615 40 1 4.4217 -9.5167 1.6171 41 1 5.9595 -8.7449 1.1610 42 1 4.7275 -7.8175 2.0500 43 1 6.8657 -8.9695 -0.6328 44 1 5.8008 -10.3958 -0.6198 45 1 8.7305 -11.5172 -5.6077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737116524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:53 Heat of formation + Delta-G solvation = -63.391135 kcal Electronic energy + Delta-G solvation = -25475.543700 eV Core-core repulsion = 21618.637940 eV Total energy + Delta-G solvation = -3856.905760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14872 -40.86485 -40.06983 -37.25549 -35.98202 -34.57433 -33.31430 -32.44103 -31.88530 -30.50408 -28.06772 -27.67784 -27.28734 -26.04859 -23.56076 -22.72533 -21.50878 -20.73075 -20.31437 -19.50726 -18.57916 -18.06827 -17.39382 -17.00826 -16.86922 -16.66304 -16.61522 -16.52670 -15.77275 -15.72908 -14.92811 -14.76503 -14.54761 -14.49217 -14.37914 -14.17565 -13.99930 -13.62404 -13.53998 -13.41750 -13.38726 -13.21893 -13.15995 -12.94965 -12.84191 -12.66780 -12.58171 -12.46674 -11.85089 -11.69655 -11.11746 -10.95288 -10.85146 -10.25329 -10.14628 -9.72761 -9.68986 -9.10976 -8.66353 -8.33270 -6.11835 0.74667 1.27190 1.44845 1.47160 1.54567 1.56625 1.59485 2.05432 2.23182 2.29294 2.57014 2.59592 3.00651 3.28408 3.72415 3.92199 3.92274 4.00932 4.06029 4.19107 4.24877 4.29690 4.33433 4.39956 4.46461 4.50787 4.59648 4.66638 4.70185 4.72098 4.83117 4.96651 4.98012 5.06998 5.08573 5.15438 5.29229 5.42403 5.50864 5.60983 5.79956 5.98325 6.20527 6.29835 6.60204 6.71240 7.07615 7.17464 7.34724 8.75682 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.001718 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.387786 B =16294.493248 C =16956.631929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.539 5.539 4 H 0.433 0.567 5 C -0.004 4.004 6 C -0.189 4.189 7 C -0.274 4.274 8 C 0.582 3.418 9 O -0.590 6.590 10 N -0.719 5.719 11 C 0.131 3.869 12 C -0.131 4.131 13 C 0.118 3.882 14 N -0.610 5.610 15 C 0.070 3.930 16 C 0.528 3.472 17 O -0.565 6.565 18 C -0.123 4.123 19 S -0.156 6.156 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.206 0.794 32 H 0.157 0.843 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 24.143 19.159 32.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 N -0.136 5.136 4 H 0.273 0.727 5 C -0.132 4.132 6 C -0.212 4.212 7 C -0.284 4.284 8 C 0.373 3.627 9 O -0.473 6.473 10 N -0.370 5.370 11 C 0.007 3.993 12 C -0.170 4.170 13 C -0.005 4.005 14 N -0.344 5.344 15 C -0.072 4.072 16 C 0.316 3.684 17 O -0.444 6.444 18 C -0.274 4.274 19 S 0.071 5.929 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.222 0.778 32 H 0.174 0.826 33 H 0.246 0.754 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.308 24.570 17.472 32.200 hybrid contribution 1.668 -0.779 0.686 1.965 sum -9.640 23.791 18.158 31.443 Atomic orbital electron populations 1.20533 0.86467 1.04211 1.03755 1.20537 0.94389 0.86175 1.01121 1.41633 1.06059 1.08747 1.57186 0.72704 1.22311 0.86421 0.96402 1.08031 1.22306 0.95193 0.94932 1.08788 1.20257 0.95117 0.91466 1.21603 1.17752 0.84926 0.85250 0.74766 1.90699 1.18087 1.85184 1.53342 1.45702 1.10281 1.05669 1.75338 1.21129 0.96537 0.79704 1.01966 1.21991 0.97505 0.94251 1.03283 1.21422 0.86912 0.88044 1.04110 1.47850 1.31046 1.49277 1.06205 1.22118 0.99278 1.01905 0.83852 1.20182 0.84243 0.80186 0.83814 1.90686 1.62850 1.58008 1.32809 1.23381 0.98967 1.02186 1.02898 1.85611 1.38287 1.64114 1.04842 1.23166 1.15379 1.34668 0.96161 0.89835 1.26143 1.01200 0.97881 0.93970 1.70184 1.41237 1.44135 0.99248 0.84999 0.77026 0.78126 0.77816 1.18634 1.20483 1.18545 0.89941 0.89156 0.90720 0.77761 0.82571 0.75392 0.90474 0.93272 0.93113 0.88732 0.86645 0.92049 0.91129 0.90731 0.87827 0.87277 0.87558 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.88 71.23 0.70 -0.63 16 2 C 0.10 1.63 7.17 41.78 0.30 1.93 16 3 N -0.54 -5.14 5.90 -182.72 -1.08 -6.21 16 4 H 0.43 0.98 8.96 -92.71 -0.83 0.14 16 5 C 0.00 -0.04 11.89 83.12 0.99 0.95 16 6 C -0.19 -2.83 10.56 23.62 0.25 -2.58 16 7 C -0.27 -5.72 6.29 -19.04 -0.12 -5.84 16 8 C 0.58 14.85 7.81 86.62 0.68 15.52 16 9 O -0.59 -18.64 14.82 -4.10 -0.06 -18.70 16 10 N -0.72 -15.06 5.55 -466.51 -2.59 -17.65 16 11 C 0.13 2.72 5.67 86.38 0.49 3.21 16 12 C -0.13 -2.57 5.65 30.59 0.17 -2.40 16 13 C 0.12 2.55 5.41 86.38 0.47 3.02 16 14 N -0.61 -15.54 2.87 -846.77 -2.43 -17.98 16 15 C 0.07 1.13 10.24 127.77 1.31 2.44 16 16 C 0.53 19.85 7.69 87.66 0.67 20.53 16 17 O -0.57 -26.69 15.44 -3.03 -0.05 -26.73 16 18 C -0.12 -4.92 4.71 71.24 0.34 -4.59 16 19 S -0.16 -8.73 20.57 -56.49 -1.16 -9.90 16 20 C -0.55 -31.20 9.50 67.95 0.65 -30.56 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.73 5.49 84.86 0.47 1.19 16 23 N -0.91 -56.31 13.22 21.65 0.29 -56.03 16 24 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 1.54 6.47 -2.39 -0.02 1.53 16 31 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.16 1.80 7.69 -2.91 -0.02 1.78 16 33 H 0.41 6.80 7.60 -92.71 -0.70 6.09 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.12 1.65 8.07 -2.39 -0.02 1.63 16 39 H 0.06 1.69 7.42 -2.38 -0.02 1.67 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.25 6.44 -2.38 -0.02 1.24 16 42 H 0.10 1.00 8.07 -2.39 -0.02 0.98 16 43 H 0.11 3.89 7.40 -2.39 -0.02 3.88 16 44 H 0.11 3.86 8.11 -2.39 -0.02 3.84 16 45 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -88.13 394.62 1.79 -86.34 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.51 Total: 19.17 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 7.36 Total: 2.19 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -5.81 Total: -97.86 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.11 Total: -45.43 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.90 kcal Total: -88.13 1.79 -86.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737116524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.949 kcal (2) G-P(sol) polarization free energy of solvation -88.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds