Wall clock time and date at job start Tue Mar 31 2020 23:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35456 * 125.56024 * 2 1 4 4 C 1.39832 * 107.86346 * 180.15427 * 3 2 1 5 5 C 1.50703 * 126.45781 * 179.86838 * 4 3 2 6 6 C 1.37873 * 107.08327 * 359.60276 * 4 3 2 7 7 C 1.46681 * 126.23113 * 180.24580 * 6 4 3 8 8 O 1.21694 * 120.00025 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99898 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99884 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46749 * 65.00202 * 11 10 9 13 13 C 1.53001 * 109.47215 * 185.00340 * 11 10 9 14 14 N 1.46496 * 109.46900 * 305.00229 * 11 10 9 15 15 C 1.34777 * 120.00050 * 155.00268 * 14 11 10 16 16 O 1.21283 * 119.99776 * 359.97438 * 15 14 11 17 17 C 1.50694 * 120.00284 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47366 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00191 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99821 * 0.02562 * 19 18 17 21 21 C 1.38791 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00445 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99827 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46894 * 60.00141 * 23 21 19 25 25 H 1.48498 * 109.46946 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47138 * 299.99816 * 23 21 19 27 27 N 1.35532 * 125.56743 * 179.70847 * 2 1 3 28 28 H 0.96997 * 125.67526 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47160 * 270.26521 * 1 2 3 30 30 H 1.08997 * 109.47338 * 30.26429 * 1 2 3 31 31 H 1.09004 * 109.46797 * 150.26999 * 1 2 3 32 32 H 1.08006 * 126.06816 * 0.02857 * 3 2 1 33 33 H 1.09002 * 109.47152 * 269.68312 * 5 4 3 34 34 H 1.09001 * 109.46980 * 149.68412 * 5 4 3 35 35 H 1.09004 * 109.47113 * 29.68393 * 5 4 3 36 36 H 0.96998 * 120.00173 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47705 * 300.00498 * 10 9 7 38 38 H 1.09002 * 109.47155 * 60.00243 * 10 9 7 39 39 H 1.09001 * 109.46945 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.46845 * 300.00085 * 13 11 10 41 41 H 1.08998 * 109.47276 * 59.99464 * 13 11 10 42 42 H 0.97002 * 120.00639 * 334.99609 * 14 11 10 43 43 H 1.08997 * 109.47327 * 300.00095 * 17 15 14 44 44 H 1.09001 * 109.46992 * 59.99550 * 17 15 14 45 45 H 0.97006 * 120.00889 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6769 -0.0036 5 6 4.8485 1.5594 -0.0077 6 6 3.6122 -0.7018 0.0034 7 6 4.7860 -1.5813 0.0079 8 8 5.9049 -1.1027 0.0050 9 7 4.6254 -2.9194 0.0152 10 6 5.7978 -3.7979 0.0191 11 6 5.3410 -5.2581 0.0267 12 1 4.8176 -5.4798 -0.9034 13 6 6.5602 -6.1733 0.1565 14 7 4.4396 -5.4818 1.1596 15 6 3.5343 -6.4793 1.1137 16 8 3.4656 -7.1913 0.1343 17 6 2.6074 -6.7098 2.2793 18 16 1.5183 -8.1092 1.9166 19 6 0.5708 -8.1526 3.4015 20 1 0.7630 -7.4353 4.1858 21 6 -0.4225 -9.1084 3.5633 22 7 -0.6570 -9.9822 2.6073 23 14 -1.4274 -9.1539 5.1373 24 1 -2.1412 -7.8626 5.3063 25 1 -2.4162 -10.2592 5.0615 26 1 -0.5243 -9.3756 6.2950 27 7 2.2954 -1.1024 0.0056 28 1 1.9834 -2.0209 0.0106 29 1 -0.3633 0.0048 1.0277 30 1 -0.3634 0.8876 -0.5179 31 1 -0.3633 -0.8924 -0.5097 32 1 1.9544 2.1270 0.0004 33 1 5.1434 1.7669 -1.0363 34 1 5.6640 1.0534 0.5090 35 1 4.6217 2.4962 0.5013 36 1 3.7336 -3.3009 0.0172 37 1 6.3962 -3.6093 -0.8723 38 1 6.3973 -3.5998 0.9076 39 1 6.2348 -7.2135 0.1614 40 1 7.2309 -6.0067 -0.6864 41 1 7.0836 -5.9514 1.0865 42 1 4.4942 -4.9122 1.9429 43 1 3.1936 -6.9271 3.1722 44 1 2.0064 -5.8162 2.4479 45 1 -1.3515 -10.6500 2.7201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737570906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:22 Heat of formation + Delta-G solvation = -47.465455 kcal Electronic energy + Delta-G solvation = -26356.077347 eV Core-core repulsion = 22499.862176 eV Total energy + Delta-G solvation = -3856.215171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69784 -39.88057 -39.05025 -36.44661 -34.06103 -32.92446 -32.50529 -31.99004 -31.35274 -28.72093 -28.04252 -27.47532 -25.61251 -25.52223 -22.03462 -21.56306 -20.69434 -20.46929 -19.51034 -18.62083 -17.90022 -16.69937 -16.57579 -16.00537 -15.68798 -15.37467 -15.02379 -14.87420 -14.72211 -14.30013 -14.16604 -13.64858 -13.45263 -13.30644 -13.28515 -13.14093 -13.04727 -12.97552 -12.75436 -12.63174 -12.45637 -12.26903 -12.12672 -11.93450 -11.71095 -11.23665 -11.12227 -11.09952 -10.83368 -10.20347 -9.90527 -9.58914 -9.44049 -9.15741 -9.09750 -9.01357 -8.33924 -8.25535 -6.59328 -6.29072 -4.00700 1.19166 2.42459 2.72446 2.81212 2.90053 2.97602 3.14271 3.17804 3.22168 3.24890 3.58822 4.13189 4.31992 4.52104 4.61481 4.81736 4.84661 4.95666 4.99925 5.06107 5.07716 5.18233 5.21805 5.29068 5.41232 5.47497 5.49926 5.56485 5.57389 5.65657 5.68731 5.75618 5.84882 5.89911 5.98511 6.02417 6.12420 6.19662 6.46852 6.51250 6.70417 7.06011 7.22280 7.51324 7.53486 7.89734 8.27301 8.44888 9.16290 10.78178 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.002692 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.233152 B =10399.002497 C =12534.153476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.061 3.939 3 C -0.212 4.212 4 C -0.069 4.069 5 C -0.090 4.090 6 C -0.066 4.066 7 C 0.591 3.409 8 O -0.529 6.529 9 N -0.732 5.732 10 C 0.115 3.885 11 C 0.131 3.869 12 H 0.095 0.905 13 C -0.161 4.161 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.513 6.513 17 C -0.155 4.155 18 S -0.058 6.058 19 C -0.538 4.538 20 H 0.072 0.928 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 N -0.537 5.537 28 H 0.416 0.584 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.398 0.602 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 20.724 -4.997 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.057 4.057 3 C -0.236 4.236 4 C -0.077 4.077 5 C -0.147 4.147 6 C -0.178 4.178 7 C 0.380 3.620 8 O -0.405 6.405 9 N -0.384 5.384 10 C -0.009 4.009 11 C 0.026 3.974 12 H 0.113 0.887 13 C -0.220 4.220 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.387 6.387 17 C -0.305 4.305 18 S 0.169 5.831 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 N -0.134 5.134 28 H 0.253 0.747 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.232 0.768 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.176 19.517 -6.716 22.588 hybrid contribution -1.224 0.300 2.569 2.861 sum 7.951 19.817 -4.147 21.752 Atomic orbital electron populations 1.20463 0.87476 1.03808 1.03357 1.20584 0.93786 0.86134 1.05228 1.20578 0.91764 0.97981 1.13304 1.19934 0.95516 0.90982 1.01305 1.20345 0.94615 0.97537 1.02181 1.20092 0.82832 0.94137 1.20760 1.17028 0.87594 0.81146 0.76242 1.90810 1.24183 1.75053 1.50499 1.45887 1.10216 1.05832 1.76462 1.21728 0.87894 0.87613 1.03652 1.21160 0.91815 0.92851 0.91597 0.88710 1.22111 0.96802 1.00810 1.02269 1.46184 1.37397 1.35469 1.20329 1.20357 0.79885 0.79318 0.88606 1.90717 1.69401 1.45053 1.33494 1.23544 1.01307 1.06800 0.98887 1.85402 1.38463 1.33792 1.25493 1.22814 1.22134 1.20255 1.03387 0.90997 1.24987 0.96458 0.94545 0.97507 1.69996 1.31257 1.16712 1.32271 0.86229 0.79398 0.77940 0.81978 1.19931 1.20757 1.19901 1.41928 1.05416 1.08620 1.57459 0.74650 0.90333 0.89702 0.91193 0.83986 0.91563 0.90182 0.92017 0.76796 0.89728 0.90514 0.91008 0.91428 0.92117 0.76734 0.89158 0.89402 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.41 36.01 0.37 -0.18 16 2 C 0.06 0.53 7.13 -81.95 -0.58 -0.06 16 3 C -0.21 -2.01 10.66 -39.98 -0.43 -2.43 16 4 C -0.07 -0.76 6.21 -104.16 -0.65 -1.40 16 5 C -0.09 -0.89 9.83 36.01 0.35 -0.53 16 6 C -0.07 -0.73 7.06 -81.98 -0.58 -1.31 16 7 C 0.59 6.90 7.79 -12.85 -0.10 6.80 16 8 O -0.53 -7.51 14.80 5.19 0.08 -7.43 16 9 N -0.73 -6.87 5.38 -61.62 -0.33 -7.20 16 10 C 0.12 1.02 5.23 -4.04 -0.02 1.00 16 11 C 0.13 1.32 2.73 -67.93 -0.19 1.13 16 12 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 13 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 14 N -0.74 -8.39 4.52 -53.81 -0.24 -8.64 16 15 C 0.53 8.82 7.81 -10.99 -0.09 8.74 16 16 O -0.51 -10.55 15.52 5.55 0.09 -10.47 16 17 C -0.15 -2.88 6.16 36.00 0.22 -2.66 16 18 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 19 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 20 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 21 C 0.07 2.07 5.49 -17.44 -0.10 1.97 16 22 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 23 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 N -0.54 -4.80 5.99 -5.69 -0.03 -4.83 16 28 H 0.42 2.94 8.19 -40.82 -0.33 2.61 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.91 6.49 -51.93 -0.34 0.57 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.40 3.38 7.27 -40.82 -0.30 3.08 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.40 3.71 8.60 -40.82 -0.35 3.36 16 43 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 44 H 0.09 1.48 8.14 -51.91 -0.42 1.05 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -35.16 396.38 -8.85 -44.01 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.75 Total: 5.90 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.13 Total: -4.66 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.12 Total: -45.46 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.16 Total: -17.89 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.16 -8.85 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737570906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.453 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds