Wall clock time and date at job start Tue Mar 31 2020 23:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35456 * 125.56024 * 2 1 4 4 C 1.39832 * 107.86346 * 180.15427 * 3 2 1 5 5 C 1.50703 * 126.45781 * 179.86838 * 4 3 2 6 6 C 1.37873 * 107.08327 * 359.60276 * 4 3 2 7 7 C 1.46681 * 126.23113 * 180.24580 * 6 4 3 8 8 O 1.21694 * 120.00025 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99898 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99884 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46749 * 65.00202 * 11 10 9 13 13 C 1.53001 * 109.47215 * 185.00340 * 11 10 9 14 14 N 1.46496 * 109.46900 * 305.00229 * 11 10 9 15 15 C 1.34777 * 120.00050 * 155.00268 * 14 11 10 16 16 O 1.21283 * 119.99776 * 359.97438 * 15 14 11 17 17 C 1.50694 * 120.00284 * 179.97438 * 15 14 11 18 18 S 1.81000 * 109.47366 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00191 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99821 * 0.02562 * 19 18 17 21 21 C 1.38791 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00445 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99827 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46894 * 60.00141 * 23 21 19 25 25 H 1.48498 * 109.46946 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47138 * 299.99816 * 23 21 19 27 27 N 1.35532 * 125.56743 * 179.70847 * 2 1 3 28 28 H 0.96997 * 125.67526 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47160 * 270.26521 * 1 2 3 30 30 H 1.08997 * 109.47338 * 30.26429 * 1 2 3 31 31 H 1.09004 * 109.46797 * 150.26999 * 1 2 3 32 32 H 1.08006 * 126.06816 * 0.02857 * 3 2 1 33 33 H 1.09002 * 109.47152 * 269.68312 * 5 4 3 34 34 H 1.09001 * 109.46980 * 149.68412 * 5 4 3 35 35 H 1.09004 * 109.47113 * 29.68393 * 5 4 3 36 36 H 0.96998 * 120.00173 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47705 * 300.00498 * 10 9 7 38 38 H 1.09002 * 109.47155 * 60.00243 * 10 9 7 39 39 H 1.09001 * 109.46945 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.46845 * 300.00085 * 13 11 10 41 41 H 1.08998 * 109.47276 * 59.99464 * 13 11 10 42 42 H 0.97002 * 120.00639 * 334.99609 * 14 11 10 43 43 H 1.08997 * 109.47327 * 300.00095 * 17 15 14 44 44 H 1.09001 * 109.46992 * 59.99550 * 17 15 14 45 45 H 0.97006 * 120.00889 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6769 -0.0036 5 6 4.8485 1.5594 -0.0077 6 6 3.6122 -0.7018 0.0034 7 6 4.7860 -1.5813 0.0079 8 8 5.9049 -1.1027 0.0050 9 7 4.6254 -2.9194 0.0152 10 6 5.7978 -3.7979 0.0191 11 6 5.3410 -5.2581 0.0267 12 1 4.8176 -5.4798 -0.9034 13 6 6.5602 -6.1733 0.1565 14 7 4.4396 -5.4818 1.1596 15 6 3.5343 -6.4793 1.1137 16 8 3.4656 -7.1913 0.1343 17 6 2.6074 -6.7098 2.2793 18 16 1.5183 -8.1092 1.9166 19 6 0.5708 -8.1526 3.4015 20 1 0.7630 -7.4353 4.1858 21 6 -0.4225 -9.1084 3.5633 22 7 -0.6570 -9.9822 2.6073 23 14 -1.4274 -9.1539 5.1373 24 1 -2.1412 -7.8626 5.3063 25 1 -2.4162 -10.2592 5.0615 26 1 -0.5243 -9.3756 6.2950 27 7 2.2954 -1.1024 0.0056 28 1 1.9834 -2.0209 0.0106 29 1 -0.3633 0.0048 1.0277 30 1 -0.3634 0.8876 -0.5179 31 1 -0.3633 -0.8924 -0.5097 32 1 1.9544 2.1270 0.0004 33 1 5.1434 1.7669 -1.0363 34 1 5.6640 1.0534 0.5090 35 1 4.6217 2.4962 0.5013 36 1 3.7336 -3.3009 0.0172 37 1 6.3962 -3.6093 -0.8723 38 1 6.3973 -3.5998 0.9076 39 1 6.2348 -7.2135 0.1614 40 1 7.2309 -6.0067 -0.6864 41 1 7.0836 -5.9514 1.0865 42 1 4.4942 -4.9122 1.9429 43 1 3.1936 -6.9271 3.1722 44 1 2.0064 -5.8162 2.4479 45 1 -1.3515 -10.6500 2.7201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737570906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:21 Heat of formation + Delta-G solvation = -72.652349 kcal Electronic energy + Delta-G solvation = -26357.169533 eV Core-core repulsion = 22499.862176 eV Total energy + Delta-G solvation = -3857.307357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.43081 -40.98933 -40.07652 -37.49913 -35.02786 -34.59111 -33.66403 -32.91973 -32.21343 -30.06867 -28.70727 -28.25724 -27.66160 -26.32275 -23.03044 -22.36995 -21.66065 -21.37836 -20.33821 -19.86045 -19.31443 -17.99338 -17.59344 -16.95494 -16.88249 -16.55218 -16.39158 -16.22210 -15.95378 -15.36768 -15.11088 -14.78163 -14.60278 -14.34694 -14.12134 -14.03899 -13.95125 -13.83194 -13.61813 -13.57875 -13.28862 -13.17425 -13.08209 -12.98821 -12.92448 -12.87841 -12.61854 -12.41448 -12.09950 -11.74887 -11.13904 -11.10710 -10.97729 -10.31994 -10.28265 -10.22993 -9.73370 -8.99020 -8.66736 -8.35522 -6.13086 0.39745 1.25574 1.42620 1.45762 1.54844 1.57744 1.71331 1.95429 2.12811 2.23797 2.27479 2.31184 2.98809 3.30554 3.49895 3.84033 3.93950 3.94811 4.01309 4.18836 4.21015 4.27242 4.30473 4.49959 4.54573 4.61770 4.67293 4.72277 4.79054 4.81826 4.89538 4.94429 4.96635 5.11640 5.15202 5.22521 5.32214 5.40884 5.42987 5.46371 5.79661 5.96291 6.18590 6.32761 6.43022 6.51384 7.04599 7.06248 7.19779 8.73088 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.002692 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.233152 B =10399.002497 C =12534.153476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.065 3.935 3 C -0.225 4.225 4 C -0.087 4.087 5 C -0.086 4.086 6 C -0.090 4.090 7 C 0.591 3.409 8 O -0.560 6.560 9 N -0.723 5.723 10 C 0.123 3.877 11 C 0.137 3.863 12 H 0.081 0.919 13 C -0.158 4.158 14 N -0.712 5.712 15 C 0.539 3.461 16 O -0.557 6.557 17 C -0.132 4.132 18 S -0.146 6.146 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.995 3.005 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.532 5.532 28 H 0.423 0.577 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.403 0.597 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.414 0.586 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.312 22.550 -3.637 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.248 4.248 4 C -0.096 4.096 5 C -0.143 4.143 6 C -0.201 4.201 7 C 0.380 3.620 8 O -0.439 6.439 9 N -0.375 5.375 10 C 0.000 4.000 11 C 0.032 3.968 12 H 0.099 0.901 13 C -0.216 4.216 14 N -0.367 5.367 15 C 0.325 3.675 16 O -0.435 6.435 17 C -0.283 4.283 18 S 0.082 5.918 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.817 3.183 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.189 1.189 27 N -0.130 5.130 28 H 0.262 0.738 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.177 0.823 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.238 0.762 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.250 0.750 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.938 21.365 -5.339 23.766 hybrid contribution -1.071 -0.167 2.098 2.361 sum 7.867 21.198 -3.241 22.842 Atomic orbital electron populations 1.20569 0.85389 1.04847 1.04141 1.21084 0.95045 0.85763 1.03484 1.20858 0.91219 0.99186 1.13569 1.20263 0.96511 0.91358 1.01471 1.20308 0.93849 0.97974 1.02186 1.20082 0.83429 0.94297 1.22340 1.17136 0.87395 0.81623 0.75824 1.90790 1.25278 1.75632 1.52192 1.45815 1.10672 1.05303 1.75705 1.21693 0.87697 0.86178 1.04461 1.21200 0.91466 0.93892 0.90201 0.90084 1.22076 0.96776 0.98752 1.04043 1.45896 1.35829 1.33702 1.21238 1.19989 0.80284 0.79921 0.87318 1.90714 1.70815 1.47070 1.34878 1.23389 1.00593 1.04102 1.00246 1.85559 1.40997 1.38612 1.26676 1.23163 1.22254 1.20480 1.03582 0.90017 1.26077 0.97726 0.93989 1.01198 1.70162 1.32155 1.17662 1.34712 0.85057 0.77632 0.78385 0.77275 1.18553 1.20508 1.18863 1.41942 1.04799 1.09232 1.57046 0.73781 0.89555 0.88202 0.90653 0.82289 0.91487 0.91954 0.90349 0.76200 0.89041 0.89614 0.93798 0.89369 0.90677 0.74964 0.87599 0.87063 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.41 71.24 0.74 -0.12 16 2 C 0.06 1.01 7.13 41.34 0.29 1.30 16 3 C -0.22 -3.90 10.66 22.01 0.23 -3.67 16 4 C -0.09 -1.85 6.21 -19.56 -0.12 -1.97 16 5 C -0.09 -1.67 9.83 71.24 0.70 -0.97 16 6 C -0.09 -1.91 7.06 40.35 0.28 -1.62 16 7 C 0.59 13.32 7.79 86.45 0.67 14.00 16 8 O -0.56 -15.70 14.80 -4.33 -0.06 -15.76 16 9 N -0.72 -12.53 5.38 -467.07 -2.51 -15.05 16 10 C 0.12 1.94 5.23 86.38 0.45 2.39 16 11 C 0.14 2.54 2.73 44.99 0.12 2.66 16 12 H 0.08 1.82 7.58 -2.39 -0.02 1.80 16 13 C -0.16 -2.79 9.48 71.98 0.68 -2.11 16 14 N -0.71 -14.88 4.52 -442.54 -2.00 -16.87 16 15 C 0.54 17.41 7.81 87.66 0.68 18.10 16 16 O -0.56 -23.21 15.52 -3.04 -0.05 -23.26 16 17 C -0.13 -4.76 6.16 71.23 0.44 -4.32 16 18 S -0.15 -7.66 20.57 -56.49 -1.16 -8.83 16 19 C -0.55 -30.06 9.50 67.95 0.65 -29.42 16 20 H 0.08 4.16 7.80 -2.91 -0.02 4.13 16 21 C 0.02 0.83 5.49 84.86 0.47 1.30 16 22 N -0.91 -54.54 13.22 21.65 0.29 -54.26 16 23 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 27 N -0.53 -8.79 5.99 -171.93 -1.03 -9.82 16 28 H 0.42 5.36 8.19 -92.71 -0.76 4.60 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.43 6.49 -2.39 -0.02 1.41 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.40 6.21 7.27 -92.71 -0.67 5.54 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.41 6.51 8.60 -92.71 -0.80 5.72 16 43 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 44 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 45 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -78.38 396.38 0.60 -77.78 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -1.19 Total: 26.19 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 6.30 Total: -4.45 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -5.26 Total: -96.00 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.11 Total: -39.02 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.83 kcal Total: -78.38 0.60 -77.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737570906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.124 kcal (2) G-P(sol) polarization free energy of solvation -78.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds