Wall clock time and date at job start Tue Mar 31 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99608 * 2 1 4 4 H 1.48497 * 109.47114 * 239.99569 * 3 2 1 5 5 H 1.48502 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46950 * 119.99792 * 3 2 1 7 7 C 1.38792 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00052 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99823 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99734 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.46491 * 119.99880 * 180.02562 * 13 11 10 15 15 C 1.53503 * 114.20774 * 205.00140 * 14 13 11 16 16 N 1.47066 * 87.98596 * 220.34520 * 15 14 13 17 17 C 1.34780 * 136.05524 * 207.08426 * 16 15 14 18 18 O 1.21278 * 119.99552 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99850 * 180.02562 * 17 16 15 20 20 C 1.56235 * 116.69395 * 62.58120 * 19 17 16 21 21 C 1.56947 * 102.16427 * 159.28733 * 20 19 17 22 22 N 1.49518 * 105.46721 * 1.12997 * 21 20 19 23 23 C 1.49518 * 105.92725 * 70.93929 * 22 21 20 24 24 C 1.54658 * 105.28184 * 288.73735 * 23 22 21 25 25 C 1.50459 * 102.03518 * 324.52517 * 22 21 20 26 26 C 1.47060 * 87.88579 * 27.11915 * 16 15 14 27 27 H 0.96998 * 120.00432 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47145 * 60.00317 * 10 9 7 29 29 H 1.09000 * 109.47389 * 300.00129 * 10 9 7 30 30 H 0.96999 * 119.99329 * 0.02562 * 13 11 10 31 31 H 1.08999 * 113.41382 * 338.20274 * 14 13 11 32 32 H 1.09000 * 113.46355 * 105.56471 * 15 14 13 33 33 H 1.09003 * 113.46309 * 335.12917 * 15 14 13 34 34 H 1.08997 * 110.67285 * 277.39019 * 20 19 17 35 35 H 1.08998 * 110.66785 * 40.52533 * 20 19 17 36 36 H 1.08997 * 110.46332 * 241.97510 * 21 20 19 37 37 H 1.09006 * 109.99754 * 120.04082 * 21 20 19 38 38 H 1.08999 * 110.28135 * 169.78190 * 23 22 21 39 39 H 1.09000 * 110.27800 * 47.69088 * 23 22 21 40 40 H 1.08997 * 110.66968 * 240.90564 * 24 23 22 41 41 H 1.09003 * 110.81325 * 117.84100 * 24 23 22 42 42 H 1.08997 * 112.69770 * 297.54142 * 25 22 21 43 43 H 1.08998 * 111.12185 * 171.33953 * 25 22 21 44 44 H 1.09006 * 113.47077 * 87.66003 * 26 16 15 45 45 H 1.08996 * 113.47134 * 218.09481 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5022 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3306 -7.7150 0.0008 15 6 3.2983 -8.7495 0.5921 16 7 2.8938 -9.6664 -0.4843 17 6 2.8317 -11.0027 -0.6485 18 8 3.1703 -11.7407 0.2524 19 6 2.3427 -11.5797 -1.9519 20 6 3.1889 -11.2551 -3.2246 21 6 2.7545 -12.3964 -4.2105 22 7 1.7389 -13.2019 -3.4653 23 6 0.5186 -12.3426 -3.3762 24 6 0.8808 -11.2231 -2.3725 25 6 2.2658 -13.1457 -2.0571 26 6 2.5878 -8.4835 -1.3028 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8010 -6.1834 0.0004 31 1 1.3091 -7.7950 0.3726 32 1 3.0118 -9.0935 1.5859 33 1 4.3442 -8.4476 0.5351 34 1 2.9242 -10.2758 -3.6232 35 1 4.2545 -11.3055 -3.0011 36 1 3.6101 -13.0179 -4.4745 37 1 2.3104 -11.9650 -5.1076 38 1 -0.3262 -12.9233 -3.0059 39 1 0.2857 -11.9150 -4.3514 40 1 0.2149 -11.2494 -1.5100 41 1 0.8465 -10.2456 -2.8537 42 1 3.2473 -13.6088 -1.9564 43 1 1.5483 -13.5659 -1.3523 44 1 3.4445 -8.1109 -1.8645 45 1 1.6974 -8.6014 -1.9202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737980578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:33 Heat of formation + Delta-G solvation = -1.531104 kcal Electronic energy + Delta-G solvation = -26641.351307 eV Core-core repulsion = 22787.127998 eV Total energy + Delta-G solvation = -3854.223308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64886 -40.51915 -38.96089 -37.80012 -33.87906 -32.48360 -31.62151 -31.05423 -29.91834 -28.53954 -28.17956 -26.45665 -25.54582 -23.25100 -23.01578 -21.44002 -20.84221 -20.69399 -18.97629 -17.91605 -17.26146 -16.93009 -16.67236 -16.51908 -16.27672 -15.77407 -15.14116 -14.87179 -14.81097 -14.33762 -14.20628 -13.82003 -13.61994 -13.33435 -13.28389 -13.13065 -12.98874 -12.66472 -12.60131 -12.50351 -12.15162 -12.08903 -11.90758 -11.71155 -11.43275 -11.13223 -11.10659 -11.08079 -10.82391 -10.77149 -10.23096 -9.89136 -9.58253 -9.53636 -9.21277 -9.12422 -9.07942 -8.32220 -6.57262 -6.27113 -3.98640 2.13624 2.22670 2.84970 2.96740 3.19596 3.23877 3.26619 3.33920 3.60447 3.78305 3.98731 4.03378 4.14913 4.18492 4.38182 4.49138 4.51210 4.62132 4.70946 4.78251 4.87874 4.97753 5.01517 5.04504 5.07887 5.08215 5.11059 5.24557 5.26691 5.34506 5.36715 5.40644 5.48901 5.50902 5.54067 5.61773 5.76249 5.78592 5.99950 6.04005 6.15886 6.37184 7.24806 7.48265 7.54025 7.73484 8.29307 8.40735 9.18225 10.80188 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.001913 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.078592 B =14631.081435 C =15010.535819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.512 6.512 13 N -0.726 5.726 14 C 0.119 3.881 15 C 0.095 3.905 16 N -0.639 5.639 17 C 0.585 3.415 18 O -0.532 6.532 19 C -0.128 4.128 20 C -0.132 4.132 21 C 0.013 3.987 22 N -0.465 5.465 23 C 0.013 3.987 24 C -0.136 4.136 25 C 0.041 3.959 26 C 0.081 3.919 27 H 0.269 0.731 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.402 0.598 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 -23.261 -6.701 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.323 3.677 12 O -0.385 6.385 13 N -0.380 5.380 14 C 0.011 3.989 15 C -0.029 4.029 16 N -0.375 5.375 17 C 0.374 3.626 18 O -0.408 6.408 19 C -0.132 4.132 20 C -0.172 4.172 21 C -0.116 4.116 22 N -0.184 5.184 23 C -0.116 4.116 24 C -0.175 4.175 25 C -0.088 4.088 26 C -0.043 4.043 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.237 0.763 31 H 0.151 0.849 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.763 -24.821 -6.574 26.316 hybrid contribution 2.692 2.383 0.274 3.605 sum 8.455 -22.439 -6.300 24.793 Atomic orbital electron populations 1.70000 1.05954 1.27658 1.46624 1.24994 0.95039 0.99060 0.94463 0.86219 0.79242 0.81200 0.78818 1.19929 1.20796 1.19911 1.22813 0.94867 0.91585 1.59264 0.90923 1.85417 1.04696 0.96380 1.96754 1.23543 1.06783 0.95035 1.05138 1.20412 0.86508 0.86297 0.74511 1.90719 1.15335 1.85481 1.46938 1.45832 1.10136 1.04366 1.77692 1.22619 1.00155 0.80652 0.95453 1.23380 0.99430 0.86437 0.93623 1.49193 1.65650 1.03424 1.19202 1.18939 0.76965 0.79142 0.87598 1.90735 1.49249 1.57808 1.43025 1.23722 0.97785 0.98909 0.92832 1.23595 0.99943 1.00144 0.93477 1.24020 0.96797 0.93752 0.97046 1.69997 1.03233 1.37068 1.08136 1.23623 0.95061 0.93387 0.99500 1.23258 0.93731 1.00213 1.00317 1.24342 1.02041 0.91294 0.91097 1.23709 1.01721 0.82413 0.96490 0.92067 0.88993 0.89019 0.76279 0.84949 0.89404 0.89214 0.90293 0.90726 0.89514 0.90091 0.89439 0.89998 0.90538 0.90238 0.88791 0.88971 0.89151 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.50 13.22 55.49 0.73 -24.76 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.73 9.50 30.94 0.29 -14.44 16 8 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 11 C 0.54 8.71 7.85 -10.98 -0.09 8.62 16 12 O -0.51 -10.43 15.46 5.55 0.09 -10.35 16 13 N -0.73 -7.67 5.39 -53.62 -0.29 -7.96 16 14 C 0.12 1.12 4.61 -67.81 -0.31 0.81 16 15 C 0.09 0.79 8.38 -8.51 -0.07 0.72 16 16 N -0.64 -5.90 3.69 -185.25 -0.68 -6.59 16 17 C 0.58 6.38 7.54 -10.98 -0.08 6.29 16 18 O -0.53 -7.71 17.34 5.56 0.10 -7.61 16 19 C -0.13 -1.06 1.19 -149.93 -0.18 -1.23 16 20 C -0.13 -0.87 6.21 -22.86 -0.14 -1.01 16 21 C 0.01 0.08 6.67 -0.23 0.00 0.08 16 22 N -0.46 -3.63 6.94 -220.55 -1.53 -5.16 16 23 C 0.01 0.09 6.60 -1.49 -0.01 0.08 16 24 C -0.14 -0.98 5.85 -24.12 -0.14 -1.12 16 25 C 0.04 0.35 6.08 0.43 0.00 0.35 16 26 C 0.08 0.64 8.23 -8.51 -0.07 0.57 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 29 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 30 H 0.40 3.01 8.76 -40.82 -0.36 2.66 16 31 H 0.13 1.53 7.45 -51.93 -0.39 1.14 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.08 0.46 7.78 -51.93 -0.40 0.06 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.44 7.69 -51.93 -0.40 0.04 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.47 7.69 -51.93 -0.40 0.07 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.53 6.62 -51.93 -0.34 0.18 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.82 8.13 -51.93 -0.42 0.39 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.66 6.79 -51.93 -0.35 0.30 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -35.04 382.29 -10.57 -45.61 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.84 Total: -0.07 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.67 Total: -0.92 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -1.77 Total: -44.47 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.18 Total: -17.96 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.04 -10.57 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737980578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.083 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds