Wall clock time and date at job start Tue Mar 31 2020 22:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99608 * 2 1 4 4 H 1.48497 * 109.47114 * 239.99569 * 3 2 1 5 5 H 1.48502 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46950 * 119.99792 * 3 2 1 7 7 C 1.38792 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00052 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99823 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99734 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99991 * 179.97438 * 11 10 9 14 14 C 1.46491 * 119.99880 * 180.02562 * 13 11 10 15 15 C 1.53503 * 114.20774 * 205.00140 * 14 13 11 16 16 N 1.47066 * 87.98596 * 220.34520 * 15 14 13 17 17 C 1.34780 * 136.05524 * 207.08426 * 16 15 14 18 18 O 1.21278 * 119.99552 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99850 * 180.02562 * 17 16 15 20 20 C 1.56235 * 116.69395 * 62.58120 * 19 17 16 21 21 C 1.56947 * 102.16427 * 159.28733 * 20 19 17 22 22 N 1.49518 * 105.46721 * 1.12997 * 21 20 19 23 23 C 1.49518 * 105.92725 * 70.93929 * 22 21 20 24 24 C 1.54658 * 105.28184 * 288.73735 * 23 22 21 25 25 C 1.50459 * 102.03518 * 324.52517 * 22 21 20 26 26 C 1.47060 * 87.88579 * 27.11915 * 16 15 14 27 27 H 0.96998 * 120.00432 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47145 * 60.00317 * 10 9 7 29 29 H 1.09000 * 109.47389 * 300.00129 * 10 9 7 30 30 H 0.96999 * 119.99329 * 0.02562 * 13 11 10 31 31 H 1.08999 * 113.41382 * 338.20274 * 14 13 11 32 32 H 1.09000 * 113.46355 * 105.56471 * 15 14 13 33 33 H 1.09003 * 113.46309 * 335.12917 * 15 14 13 34 34 H 1.08997 * 110.67285 * 277.39019 * 20 19 17 35 35 H 1.08998 * 110.66785 * 40.52533 * 20 19 17 36 36 H 1.08997 * 110.46332 * 241.97510 * 21 20 19 37 37 H 1.09006 * 109.99754 * 120.04082 * 21 20 19 38 38 H 1.08999 * 110.28135 * 169.78190 * 23 22 21 39 39 H 1.09000 * 110.27800 * 47.69088 * 23 22 21 40 40 H 1.08997 * 110.66968 * 240.90564 * 24 23 22 41 41 H 1.09003 * 110.81325 * 117.84100 * 24 23 22 42 42 H 1.08997 * 112.69770 * 297.54142 * 25 22 21 43 43 H 1.08998 * 111.12185 * 171.33953 * 25 22 21 44 44 H 1.09006 * 113.47077 * 87.66003 * 26 16 15 45 45 H 1.08996 * 113.47134 * 218.09481 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5022 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3306 -7.7150 0.0008 15 6 3.2983 -8.7495 0.5921 16 7 2.8938 -9.6664 -0.4843 17 6 2.8317 -11.0027 -0.6485 18 8 3.1703 -11.7407 0.2524 19 6 2.3427 -11.5797 -1.9519 20 6 3.1889 -11.2551 -3.2246 21 6 2.7545 -12.3964 -4.2105 22 7 1.7389 -13.2019 -3.4653 23 6 0.5186 -12.3426 -3.3762 24 6 0.8808 -11.2231 -2.3725 25 6 2.2658 -13.1457 -2.0571 26 6 2.5878 -8.4835 -1.3028 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8010 -6.1834 0.0004 31 1 1.3091 -7.7950 0.3726 32 1 3.0118 -9.0935 1.5859 33 1 4.3442 -8.4476 0.5351 34 1 2.9242 -10.2758 -3.6232 35 1 4.2545 -11.3055 -3.0011 36 1 3.6101 -13.0179 -4.4745 37 1 2.3104 -11.9650 -5.1076 38 1 -0.3262 -12.9233 -3.0059 39 1 0.2857 -11.9150 -4.3514 40 1 0.2149 -11.2494 -1.5100 41 1 0.8465 -10.2456 -2.8537 42 1 3.2473 -13.6088 -1.9564 43 1 1.5483 -13.5659 -1.3523 44 1 3.4445 -8.1109 -1.8645 45 1 1.6974 -8.6014 -1.9202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737980578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:32 Heat of formation + Delta-G solvation = -29.404731 kcal Electronic energy + Delta-G solvation = -26642.559998 eV Core-core repulsion = 22787.127998 eV Total energy + Delta-G solvation = -3855.431999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33328 -41.33080 -40.08542 -38.76283 -34.99109 -34.55547 -32.35947 -31.57614 -31.09516 -29.27702 -29.04660 -27.62627 -27.13696 -24.10731 -23.54359 -22.16743 -21.84101 -21.48756 -19.86487 -19.62636 -18.10913 -17.90154 -17.49648 -17.47773 -17.06559 -16.85291 -16.38373 -16.32934 -16.19178 -15.42155 -15.11691 -14.84573 -14.70401 -14.38449 -14.20390 -13.94568 -13.79882 -13.70101 -13.48656 -13.30708 -13.14340 -13.12889 -12.84958 -12.73909 -12.61420 -12.47174 -12.32176 -12.24987 -11.74578 -11.70641 -11.31534 -11.14566 -11.10613 -10.89561 -10.24091 -10.18611 -10.08941 -9.91839 -8.63194 -8.32427 -6.09669 1.23846 1.33840 1.42558 1.45367 1.52985 1.57750 1.65950 2.28930 2.36443 2.74054 3.01917 3.10470 3.31656 3.34784 3.39303 3.53089 3.72752 3.82622 3.93651 3.96913 4.06080 4.10083 4.25550 4.27482 4.36452 4.37914 4.44339 4.48337 4.52257 4.56886 4.57512 4.67779 4.74983 4.80416 4.88699 4.90065 4.90155 5.00111 5.07519 5.40612 5.43975 5.44543 5.63429 6.21989 6.42681 6.53622 6.91548 7.09410 7.23010 8.76207 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.001913 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.078592 B =14631.081435 C =15010.535819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.996 3.004 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.541 3.459 12 O -0.560 6.560 13 N -0.695 5.695 14 C 0.114 3.886 15 C 0.099 3.901 16 N -0.639 5.639 17 C 0.581 3.419 18 O -0.577 6.577 19 C -0.129 4.129 20 C -0.124 4.124 21 C 0.014 3.986 22 N -0.476 5.476 23 C 0.015 3.985 24 C -0.131 4.131 25 C 0.040 3.960 26 C 0.091 3.909 27 H 0.270 0.730 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.423 0.577 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.466 -22.950 -8.045 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.282 4.282 11 C 0.328 3.672 12 O -0.437 6.437 13 N -0.350 5.350 14 C 0.007 3.993 15 C -0.024 4.024 16 N -0.374 5.374 17 C 0.371 3.629 18 O -0.456 6.456 19 C -0.134 4.134 20 C -0.163 4.163 21 C -0.115 4.115 22 N -0.195 5.195 23 C -0.114 4.114 24 C -0.170 4.170 25 C -0.090 4.090 26 C -0.032 4.032 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.261 0.739 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.136 0.864 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.357 -24.525 -7.932 27.097 hybrid contribution 1.944 2.152 0.719 2.988 sum 10.302 -22.373 -7.214 25.665 Atomic orbital electron populations 1.70172 1.07935 1.28596 1.48086 1.26100 0.95930 1.03284 0.93882 0.85039 0.77810 0.75888 0.79495 1.18586 1.20693 1.18745 1.23176 0.95386 0.92023 1.58676 0.89756 1.85598 1.10631 0.99264 1.97067 1.23382 1.03535 0.94051 1.07186 1.20059 0.86172 0.86575 0.74432 1.90717 1.17451 1.85955 1.49614 1.45426 1.10506 1.03577 1.75498 1.22556 0.99456 0.79952 0.97308 1.23466 1.00521 0.85363 0.93084 1.49199 1.64942 1.03378 1.19850 1.19346 0.76345 0.79275 0.87924 1.90709 1.51393 1.58876 1.44630 1.23670 0.98795 0.98545 0.92420 1.23579 0.99516 1.00890 0.92298 1.24082 0.96679 0.93567 0.97185 1.69983 1.03993 1.37986 1.07564 1.23655 0.94664 0.93029 1.00039 1.23234 0.92723 1.00964 1.00084 1.24281 1.01467 0.91645 0.91571 1.23761 1.03050 0.80897 0.95532 0.92080 0.87020 0.86653 0.73863 0.87289 0.90215 0.86345 0.88943 0.90785 0.89121 0.88671 0.89568 0.88514 0.91731 0.89174 0.89342 0.90148 0.86447 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.61 13.22 21.65 0.29 -54.33 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 42.16 29.55 68.60 2.03 44.19 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.54 -29.73 9.50 67.95 0.65 -29.08 16 8 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 9 S -0.15 -8.00 20.57 -56.49 -1.16 -9.16 16 10 C -0.13 -4.52 6.16 71.24 0.44 -4.09 16 11 C 0.54 16.82 7.85 87.66 0.69 17.51 16 12 O -0.56 -23.01 15.46 -3.04 -0.05 -23.06 16 13 N -0.70 -12.77 5.39 -441.93 -2.38 -15.15 16 14 C 0.11 1.95 4.61 45.47 0.21 2.16 16 15 C 0.10 1.43 8.38 83.18 0.70 2.12 16 16 N -0.64 -10.69 3.69 -858.38 -3.17 -13.85 16 17 C 0.58 12.26 7.54 87.66 0.66 12.92 16 18 O -0.58 -16.90 17.34 -3.02 -0.05 -16.95 16 19 C -0.13 -2.01 1.19 -49.22 -0.06 -2.07 16 20 C -0.12 -1.33 6.21 33.10 0.21 -1.13 16 21 C 0.01 0.14 6.67 87.18 0.58 0.72 16 22 N -0.48 -6.86 6.94 -851.68 -5.91 -12.77 16 23 C 0.01 0.18 6.60 86.36 0.57 0.75 16 24 C -0.13 -1.74 5.85 32.29 0.19 -1.55 16 25 C 0.04 0.67 6.08 87.06 0.53 1.20 16 26 C 0.09 1.17 8.23 83.18 0.68 1.85 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.11 3.45 8.14 -2.39 -0.02 3.44 16 29 H 0.12 3.48 8.14 -2.40 -0.02 3.46 16 30 H 0.42 4.55 8.76 -92.71 -0.81 3.74 16 31 H 0.11 2.49 7.45 -2.39 -0.02 2.48 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.12 1.09 8.13 -2.39 -0.02 1.07 16 34 H 0.09 0.76 7.78 -2.39 -0.02 0.74 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.74 7.69 -2.38 -0.02 0.72 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 0.89 7.69 -2.39 -0.02 0.87 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 0.99 6.62 -2.39 -0.02 0.98 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 44 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.09 1.14 6.79 -2.39 -0.02 1.13 16 Total: -1.00 -79.37 382.29 -3.70 -83.07 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.20 Total: 15.50 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 6.51 Total: 2.50 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -11.17 Total: -96.10 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.10 Total: -40.01 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -79.37 -3.70 -83.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737980578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.668 kcal (2) G-P(sol) polarization free energy of solvation -79.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds