Wall clock time and date at job start Tue Mar 31 2020 22:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47031 * 239.99679 * 3 2 1 5 5 H 1.48503 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47260 * 120.00038 * 3 2 1 7 7 C 1.38802 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99837 * 359.72792 * 7 2 1 10 10 C 1.81005 * 99.99714 * 180.27107 * 9 7 2 11 11 C 1.50695 * 109.47125 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00050 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00290 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00075 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47067 * 174.95952 * 14 13 11 16 16 H 1.08995 * 109.46379 * 174.44141 * 15 14 13 17 17 C 1.53039 * 109.46445 * 294.42241 * 15 14 13 18 18 C 1.53110 * 109.28002 * 179.19380 * 17 15 14 19 19 C 1.53127 * 109.16269 * 302.34558 * 18 17 15 20 20 C 1.53031 * 109.27658 * 57.65436 * 19 18 17 21 21 N 1.46848 * 109.46192 * 54.47470 * 15 14 13 22 22 C 1.46904 * 111.00176 * 54.14721 * 21 15 14 23 23 C 1.50699 * 109.46868 * 175.85809 * 22 21 15 24 24 C 1.41380 * 126.80405 * 95.00352 * 23 22 21 25 25 C 1.35449 * 103.98542 * 179.97438 * 24 23 22 26 26 O 1.34045 * 106.44823 * 359.97438 * 25 24 23 27 27 N 1.20923 * 111.56651 * 359.71348 * 26 25 24 28 28 H 0.96996 * 120.00258 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47579 * 300.00340 * 10 9 7 30 30 H 1.09007 * 109.46460 * 60.00139 * 10 9 7 31 31 H 0.96998 * 119.99748 * 0.02562 * 13 11 10 32 32 H 1.09005 * 109.47050 * 294.95550 * 14 13 11 33 33 H 1.08996 * 109.47427 * 54.96023 * 14 13 11 34 34 H 1.08993 * 109.49976 * 299.13771 * 17 15 14 35 35 H 1.09008 * 109.50332 * 59.21179 * 17 15 14 36 36 H 1.09000 * 109.52381 * 62.24944 * 18 17 15 37 37 H 1.08999 * 109.52285 * 182.37450 * 18 17 15 38 38 H 1.09000 * 109.49883 * 177.59859 * 19 18 17 39 39 H 1.08999 * 109.50071 * 297.66992 * 19 18 17 40 40 H 1.09004 * 109.46277 * 60.83571 * 20 19 18 41 41 H 1.09001 * 109.46314 * 180.80329 * 20 19 18 42 42 H 1.09005 * 109.46685 * 295.85286 * 22 21 15 43 43 H 1.08994 * 109.47218 * 55.85476 * 22 21 15 44 44 H 1.07996 * 128.00568 * 359.95843 * 24 23 22 45 45 H 1.08003 * 126.77706 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0085 10 6 2.5160 -3.8914 0.0145 11 6 1.9876 -5.3026 0.0224 12 8 0.7914 -5.5023 0.0234 13 7 2.8444 -6.3430 0.0274 14 6 2.3307 -7.7150 0.0346 15 6 3.4975 -8.6971 -0.0876 16 1 3.1265 -9.7166 0.0168 17 6 4.1606 -8.5334 -1.4571 18 6 5.3398 -9.5038 -1.5671 19 6 6.3244 -9.2297 -0.4269 20 6 5.5986 -9.3732 0.9127 21 7 4.4799 -8.4236 0.9691 22 6 3.8453 -8.4357 2.2939 23 6 4.8980 -8.2532 3.3567 24 6 5.2823 -7.0378 3.9682 25 6 6.2502 -7.4030 4.8426 26 8 6.3896 -8.7307 4.7217 27 7 5.6286 -9.1844 3.8987 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7359 -0.8762 30 1 3.1246 -3.7266 0.9037 31 1 3.8012 -6.1834 0.0262 32 1 1.7976 -7.8984 0.9675 33 1 1.6505 -7.8527 -0.8058 34 1 3.4353 -8.7516 -2.2409 35 1 4.5192 -7.5099 -1.5679 36 1 4.9759 -10.5288 -1.4957 37 1 5.8408 -9.3611 -2.5246 38 1 7.1450 -9.9455 -0.4748 39 1 6.7182 -8.2177 -0.5216 40 1 5.2176 -10.3896 1.0123 41 1 6.2934 -9.1647 1.7263 42 1 3.1206 -7.6239 2.3571 43 1 3.3378 -9.3884 2.4450 44 1 4.8943 -6.0474 3.7812 45 1 6.8009 -6.7528 5.5062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752817784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:36 Heat of formation + Delta-G solvation = 27.789489 kcal Electronic energy + Delta-G solvation = -27279.924972 eV Core-core repulsion = 23426.973100 eV Total energy + Delta-G solvation = -3852.951872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.19489 -40.15449 -38.64797 -35.37477 -34.64992 -32.99308 -32.41497 -31.87953 -31.39614 -29.19309 -27.67691 -26.01306 -25.38678 -23.98219 -23.08088 -21.83657 -21.03100 -20.59498 -19.59317 -17.98964 -17.94481 -17.77679 -16.45901 -16.35749 -15.85747 -15.49486 -15.28379 -14.86543 -14.78795 -14.47496 -14.32370 -14.09806 -13.77857 -13.59178 -13.52769 -13.05362 -12.87753 -12.61311 -12.49665 -12.42078 -12.15479 -11.73313 -11.57519 -11.48443 -11.03553 -11.03147 -11.00532 -10.77715 -10.73225 -10.64000 -10.34433 -9.86667 -9.80385 -9.35159 -9.04892 -8.78399 -8.69209 -8.21235 -6.47796 -6.20189 -3.90398 1.23895 1.93168 3.01636 3.08310 3.16693 3.24043 3.28378 3.32421 3.50909 3.82924 3.91165 4.22151 4.24249 4.40021 4.45360 4.60528 4.81369 4.91749 4.93648 5.00974 5.03813 5.13563 5.14831 5.22687 5.26569 5.30797 5.35467 5.45208 5.50870 5.59100 5.60482 5.65001 5.67631 5.78660 5.81443 5.87462 5.89467 5.94229 6.08365 6.18561 6.59684 6.65330 6.79838 7.60620 7.85929 7.98667 8.36442 8.70197 9.25012 10.87168 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.002793 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.787291 B =10024.131529 C =11285.239145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.530 3.470 12 O -0.523 6.523 13 N -0.726 5.726 14 C 0.125 3.875 15 C 0.076 3.924 16 H 0.057 0.943 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.116 4.116 20 C 0.055 3.945 21 N -0.525 5.525 22 C 0.129 3.871 23 C 0.024 3.976 24 C -0.214 4.214 25 C -0.063 4.063 26 O 0.097 5.903 27 N -0.366 5.366 28 H 0.269 0.731 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.406 0.594 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.175 0.825 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.136 -20.326 4.107 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.398 6.398 13 N -0.382 5.382 14 C 0.000 4.000 15 C -0.033 4.033 16 H 0.075 0.925 17 C -0.150 4.150 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.072 4.072 21 N -0.252 5.252 22 C 0.001 3.999 23 C -0.134 4.134 24 C -0.235 4.235 25 C -0.144 4.144 26 O 0.030 5.970 27 N -0.070 5.070 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.241 0.759 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.070 0.930 44 H 0.192 0.808 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 13.225 -21.431 3.866 25.478 hybrid contribution 1.937 1.503 0.224 2.462 sum 15.161 -19.928 4.091 25.372 Atomic orbital electron populations 1.70007 1.05946 1.27526 1.46863 1.24982 0.95007 0.98981 0.94572 0.86240 0.79246 0.81312 0.78794 1.19946 1.20841 1.19953 1.22836 0.94870 0.91736 1.58945 0.91014 1.85386 1.05062 0.96273 1.96710 1.23504 1.06376 0.95498 1.04808 1.20302 0.86506 0.86341 0.75287 1.90699 1.15473 1.85665 1.47929 1.45888 1.10413 1.04669 1.77249 1.21336 0.94702 0.81564 1.02352 1.21968 0.91605 0.97627 0.92062 0.92493 1.21636 0.97472 1.00924 0.94921 1.21591 0.96451 0.99143 0.98695 1.21589 0.97654 1.02494 0.93669 1.22150 0.93172 0.93399 0.98511 1.61953 1.09839 1.51600 1.01776 1.20495 0.92287 1.02542 0.84601 1.23422 1.00061 0.89740 1.00218 1.22818 1.00531 1.00779 0.99406 1.26041 1.01031 0.84842 1.02519 1.84821 1.46147 1.21460 1.44593 1.73874 1.05101 1.23601 1.04440 0.92159 0.89371 0.89378 0.75883 0.91918 0.90657 0.90921 0.90518 0.92313 0.91548 0.91652 0.90972 0.94791 0.90518 0.87561 0.93015 0.80780 0.76667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 11 C 0.53 9.62 7.85 -10.99 -0.09 9.53 16 12 O -0.52 -11.65 15.86 5.56 0.09 -11.56 16 13 N -0.73 -9.39 4.96 -60.30 -0.30 -9.69 16 14 C 0.13 1.40 4.56 -4.04 -0.02 1.38 16 15 C 0.08 0.66 2.10 -67.72 -0.14 0.52 16 16 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 17 C -0.11 -0.91 5.26 -26.65 -0.14 -1.05 16 18 C -0.12 -0.88 6.00 -26.61 -0.16 -1.04 16 19 C -0.12 -0.90 6.09 -26.65 -0.16 -1.06 16 20 C 0.06 0.50 5.07 -3.83 -0.02 0.48 16 21 N -0.53 -4.76 3.94 -228.12 -0.90 -5.66 16 22 C 0.13 1.25 5.05 -4.97 -0.03 1.22 16 23 C 0.02 0.25 5.52 -82.10 -0.45 -0.21 16 24 C -0.21 -1.88 11.12 -39.38 -0.44 -2.31 16 25 C -0.06 -0.44 12.30 29.74 0.37 -0.08 16 26 O 0.10 0.91 11.20 17.16 0.19 1.11 16 27 N -0.37 -4.00 10.81 33.42 0.36 -3.64 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 31 H 0.41 4.59 7.43 -40.82 -0.30 4.28 16 32 H 0.06 0.73 6.76 -51.93 -0.35 0.38 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.69 7.32 -51.92 -0.38 0.31 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.79 5.84 -51.93 -0.30 0.48 16 42 H 0.11 1.09 6.50 -51.93 -0.34 0.76 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.22 0.63 8.06 -52.48 -0.42 0.20 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -34.34 379.14 -8.92 -43.26 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.71 Total: 1.71 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.86 Total: -8.27 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.10 Total: -44.35 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.28 Total: -10.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.34 -8.92 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752817784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.048 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds