Wall clock time and date at job start Tue Mar 31 2020 22:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47031 * 239.99679 * 3 2 1 5 5 H 1.48503 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47260 * 120.00038 * 3 2 1 7 7 C 1.38802 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99837 * 359.72792 * 7 2 1 10 10 C 1.81005 * 99.99714 * 180.27107 * 9 7 2 11 11 C 1.50695 * 109.47125 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00050 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00290 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00075 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47067 * 174.95952 * 14 13 11 16 16 H 1.08995 * 109.46379 * 174.44141 * 15 14 13 17 17 C 1.53039 * 109.46445 * 294.42241 * 15 14 13 18 18 C 1.53110 * 109.28002 * 179.19380 * 17 15 14 19 19 C 1.53127 * 109.16269 * 302.34558 * 18 17 15 20 20 C 1.53031 * 109.27658 * 57.65436 * 19 18 17 21 21 N 1.46848 * 109.46192 * 54.47470 * 15 14 13 22 22 C 1.46904 * 111.00176 * 54.14721 * 21 15 14 23 23 C 1.50699 * 109.46868 * 175.85809 * 22 21 15 24 24 C 1.41380 * 126.80405 * 95.00352 * 23 22 21 25 25 C 1.35449 * 103.98542 * 179.97438 * 24 23 22 26 26 O 1.34045 * 106.44823 * 359.97438 * 25 24 23 27 27 N 1.20923 * 111.56651 * 359.71348 * 26 25 24 28 28 H 0.96996 * 120.00258 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47579 * 300.00340 * 10 9 7 30 30 H 1.09007 * 109.46460 * 60.00139 * 10 9 7 31 31 H 0.96998 * 119.99748 * 0.02562 * 13 11 10 32 32 H 1.09005 * 109.47050 * 294.95550 * 14 13 11 33 33 H 1.08996 * 109.47427 * 54.96023 * 14 13 11 34 34 H 1.08993 * 109.49976 * 299.13771 * 17 15 14 35 35 H 1.09008 * 109.50332 * 59.21179 * 17 15 14 36 36 H 1.09000 * 109.52381 * 62.24944 * 18 17 15 37 37 H 1.08999 * 109.52285 * 182.37450 * 18 17 15 38 38 H 1.09000 * 109.49883 * 177.59859 * 19 18 17 39 39 H 1.08999 * 109.50071 * 297.66992 * 19 18 17 40 40 H 1.09004 * 109.46277 * 60.83571 * 20 19 18 41 41 H 1.09001 * 109.46314 * 180.80329 * 20 19 18 42 42 H 1.09005 * 109.46685 * 295.85286 * 22 21 15 43 43 H 1.08994 * 109.47218 * 55.85476 * 22 21 15 44 44 H 1.07996 * 128.00568 * 359.95843 * 24 23 22 45 45 H 1.08003 * 126.77706 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0085 10 6 2.5160 -3.8914 0.0145 11 6 1.9876 -5.3026 0.0224 12 8 0.7914 -5.5023 0.0234 13 7 2.8444 -6.3430 0.0274 14 6 2.3307 -7.7150 0.0346 15 6 3.4975 -8.6971 -0.0876 16 1 3.1265 -9.7166 0.0168 17 6 4.1606 -8.5334 -1.4571 18 6 5.3398 -9.5038 -1.5671 19 6 6.3244 -9.2297 -0.4269 20 6 5.5986 -9.3732 0.9127 21 7 4.4799 -8.4236 0.9691 22 6 3.8453 -8.4357 2.2939 23 6 4.8980 -8.2532 3.3567 24 6 5.2823 -7.0378 3.9682 25 6 6.2502 -7.4030 4.8426 26 8 6.3896 -8.7307 4.7217 27 7 5.6286 -9.1844 3.8987 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7359 -0.8762 30 1 3.1246 -3.7266 0.9037 31 1 3.8012 -6.1834 0.0262 32 1 1.7976 -7.8984 0.9675 33 1 1.6505 -7.8527 -0.8058 34 1 3.4353 -8.7516 -2.2409 35 1 4.5192 -7.5099 -1.5679 36 1 4.9759 -10.5288 -1.4957 37 1 5.8408 -9.3611 -2.5246 38 1 7.1450 -9.9455 -0.4748 39 1 6.7182 -8.2177 -0.5216 40 1 5.2176 -10.3896 1.0123 41 1 6.2934 -9.1647 1.7263 42 1 3.1206 -7.6239 2.3571 43 1 3.3378 -9.3884 2.4450 44 1 4.8943 -6.0474 3.7812 45 1 6.8009 -6.7528 5.5062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752817784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:35 Heat of formation + Delta-G solvation = 4.275891 kcal Electronic energy + Delta-G solvation = -27280.944598 eV Core-core repulsion = 23426.973100 eV Total energy + Delta-G solvation = -3853.971498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.90098 -41.10786 -39.90686 -36.11290 -35.74523 -34.55674 -33.70533 -32.71003 -32.30162 -30.55928 -28.44796 -27.68330 -26.82941 -24.68215 -23.75162 -22.62369 -21.89297 -21.68572 -20.43005 -19.81447 -18.66369 -18.61891 -17.81051 -17.42989 -16.85276 -16.80014 -16.52078 -16.23222 -15.99400 -15.65672 -15.18559 -15.03914 -14.91921 -14.54985 -14.37293 -14.22695 -14.17290 -13.88867 -13.33099 -13.28029 -13.13851 -13.05392 -12.90635 -12.83815 -12.60953 -12.28687 -12.21289 -11.72262 -11.63451 -11.43612 -11.32199 -11.10342 -11.07751 -10.89329 -10.52021 -10.23721 -10.01060 -9.45438 -8.62836 -8.31870 -6.09374 0.60055 1.24041 1.30344 1.45594 1.49541 1.59579 1.69426 2.29195 2.36461 2.45578 2.80023 3.02160 3.18012 3.37114 3.54581 3.65521 3.73355 3.95255 4.08268 4.10436 4.19933 4.28750 4.33257 4.35636 4.36372 4.45817 4.56243 4.58169 4.60685 4.61009 4.71224 4.82260 4.83786 4.90356 4.98642 5.06089 5.15188 5.22288 5.26588 5.44238 5.44780 5.48328 5.88798 5.97976 6.22319 6.61542 7.09441 7.32054 7.33100 8.77016 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.002793 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.787291 B =10024.131529 C =11285.239145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.127 4.127 11 C 0.534 3.466 12 O -0.569 6.569 13 N -0.698 5.698 14 C 0.126 3.874 15 C 0.085 3.915 16 H 0.068 0.932 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.112 4.112 20 C 0.061 3.939 21 N -0.525 5.525 22 C 0.132 3.868 23 C 0.012 3.988 24 C -0.236 4.236 25 C -0.042 4.042 26 O 0.089 5.911 27 N -0.390 5.390 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.417 0.583 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.048 0.952 44 H 0.180 0.820 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.873 -20.359 4.141 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.278 4.278 11 C 0.320 3.680 12 O -0.448 6.448 13 N -0.352 5.352 14 C 0.001 3.999 15 C -0.023 4.023 16 H 0.085 0.915 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.067 4.067 21 N -0.251 5.251 22 C 0.004 3.996 23 C -0.146 4.146 24 C -0.258 4.258 25 C -0.123 4.123 26 O 0.024 5.976 27 N -0.096 5.096 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.255 0.745 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.116 0.884 43 H 0.067 0.933 44 H 0.198 0.802 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 16.019 -21.507 3.902 27.099 hybrid contribution 1.149 1.390 0.259 1.822 sum 17.167 -20.117 4.161 26.772 Atomic orbital electron populations 1.70177 1.07971 1.28617 1.48062 1.26106 0.95926 1.03255 0.93775 0.85030 0.77824 0.75788 0.79524 1.18713 1.20512 1.18558 1.23183 0.95347 0.92105 1.58813 0.89953 1.85559 1.10565 0.99106 1.97029 1.23340 1.03393 0.94550 1.06558 1.20011 0.86156 0.86612 0.75267 1.90690 1.17414 1.86106 1.50581 1.45614 1.10347 1.04449 1.74827 1.21455 0.95745 0.80587 1.02063 1.21900 0.90743 0.97178 0.92514 0.91453 1.21641 0.97977 1.00879 0.94357 1.21558 0.95857 0.99054 0.98900 1.21570 0.97905 1.02535 0.92995 1.22090 0.92770 0.92933 0.98887 1.61968 1.09875 1.51791 1.01498 1.20417 0.92192 1.01996 0.85038 1.23580 1.00166 0.90405 1.00446 1.23012 1.01668 1.00674 1.00402 1.26777 0.99900 0.84024 1.01611 1.84785 1.45902 1.22669 1.44286 1.73870 1.05961 1.24368 1.05379 0.92044 0.87590 0.87397 0.74489 0.92240 0.91057 0.90387 0.91187 0.91801 0.90589 0.90667 0.91419 0.95239 0.91723 0.88381 0.93347 0.80223 0.72596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.81 13.22 21.65 0.29 -55.52 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.55 -30.96 9.50 67.95 0.65 -30.32 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 10 C -0.13 -4.96 6.16 71.23 0.44 -4.52 16 11 C 0.53 19.18 7.85 87.66 0.69 19.87 16 12 O -0.57 -25.83 15.86 -3.03 -0.05 -25.88 16 13 N -0.70 -17.22 4.96 -463.07 -2.30 -19.52 16 14 C 0.13 2.69 4.56 86.38 0.39 3.08 16 15 C 0.08 1.36 2.10 44.94 0.09 1.45 16 16 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 17 C -0.11 -1.58 5.26 30.64 0.16 -1.42 16 18 C -0.12 -1.41 6.00 30.67 0.18 -1.22 16 19 C -0.11 -1.51 6.09 30.65 0.19 -1.32 16 20 C 0.06 1.01 5.07 86.32 0.44 1.45 16 21 N -0.52 -8.88 3.94 -875.64 -3.45 -12.33 16 22 C 0.13 2.49 5.05 85.56 0.43 2.92 16 23 C 0.01 0.24 5.52 43.58 0.24 0.48 16 24 C -0.24 -3.84 11.12 22.40 0.25 -3.59 16 25 C -0.04 -0.51 12.30 67.17 0.83 0.32 16 26 O 0.09 1.58 11.20 71.59 0.80 2.38 16 27 N -0.39 -8.31 10.81 -49.55 -0.54 -8.85 16 28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 30 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.42 8.62 7.43 -92.71 -0.69 7.93 16 32 H 0.06 1.36 6.76 -2.38 -0.02 1.34 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.11 7.32 -2.38 -0.02 1.09 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 1.27 5.84 -2.39 -0.01 1.25 16 42 H 0.10 1.99 6.50 -2.38 -0.02 1.98 16 43 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.26 0.57 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -76.46 379.14 1.38 -75.08 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.31 Total: 20.40 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.44 Total: -11.54 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -6.00 Total: -96.22 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.75 Total: -23.50 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -76.46 1.38 -75.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752817784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.353 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds