Wall clock time and date at job start Tue Mar 31 2020 23:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32767 * 124.71193 * 2 1 4 4 C 1.44427 * 113.08306 * 180.26905 * 3 2 1 5 5 C 1.47199 * 123.45920 * 179.73226 * 4 3 2 6 6 O 1.21632 * 119.99694 * 139.44315 * 5 4 3 7 7 N 1.34776 * 119.99809 * 319.44005 * 5 4 3 8 8 C 1.46500 * 120.00245 * 4.66238 * 7 5 4 9 9 C 1.46501 * 119.99858 * 184.65837 * 7 5 4 10 10 C 1.53000 * 109.46739 * 90.00231 * 9 7 5 11 11 N 1.46904 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00007 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46954 * 180.02562 * 12 11 10 14 14 O 1.21299 * 119.99973 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00028 * 179.97438 * 13 12 11 16 16 C 1.37087 * 119.99817 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00515 * 0.02562 * 16 15 13 18 18 C 1.38953 * 120.00107 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00504 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47095 * 89.99593 * 20 18 16 22 22 H 1.48503 * 109.47061 * 209.99559 * 20 18 16 23 23 H 1.48497 * 109.46715 * 329.99787 * 20 18 16 24 24 C 1.36002 * 113.07909 * 359.50264 * 4 3 2 25 25 C 1.50708 * 124.59404 * 180.20126 * 24 4 3 26 26 S 1.70449 * 110.81700 * 0.47966 * 24 4 3 27 27 H 1.09003 * 109.47079 * 90.00467 * 1 2 3 28 28 H 1.09001 * 109.47058 * 210.00167 * 1 2 3 29 29 H 1.08997 * 109.47165 * 329.99820 * 1 2 3 30 30 H 1.07998 * 123.45817 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46827 * 84.37581 * 8 7 5 32 32 H 1.09000 * 109.47121 * 204.37692 * 8 7 5 33 33 H 1.09001 * 109.47239 * 324.37853 * 8 7 5 34 34 H 1.08999 * 109.47098 * 209.99932 * 9 7 5 35 35 H 1.08994 * 109.47105 * 330.00606 * 9 7 5 36 36 H 1.09001 * 109.47582 * 299.99800 * 10 9 7 37 37 H 1.09000 * 109.47473 * 60.00309 * 10 9 7 38 38 H 1.00903 * 111.00051 * 56.04454 * 11 10 9 39 39 H 1.09007 * 109.46868 * 299.99905 * 12 11 10 40 40 H 1.08997 * 109.47405 * 59.99675 * 12 11 10 41 41 H 0.97000 * 119.99498 * 0.02562 * 15 13 12 42 42 H 0.96991 * 120.00430 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.46840 * 180.34336 * 25 24 4 44 44 H 1.09002 * 109.46636 * 300.34229 * 25 24 4 45 45 H 1.08997 * 109.47059 * 60.34178 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6777 0.8003 -0.0062 5 6 4.7201 1.8395 -0.0132 6 8 5.7191 1.7034 0.6672 7 7 4.5676 2.9418 -0.7736 8 6 3.3211 3.1548 -1.5133 9 6 5.6483 3.9271 -0.8603 10 6 6.5757 3.5657 -2.0222 11 7 7.6591 4.5541 -2.1096 12 6 8.5712 4.2388 -3.2172 13 6 9.6671 5.2716 -3.2748 14 8 9.6862 6.1811 -2.4725 15 7 10.6261 5.1847 -4.2179 16 6 11.6227 6.1245 -4.2706 17 1 11.6398 6.9344 -3.5562 18 6 12.6111 6.0353 -5.2431 19 7 12.5908 5.0496 -6.1121 20 14 13.9696 7.3154 -5.3146 21 1 15.1090 6.8758 -4.4699 22 1 14.4267 7.4743 -6.7186 23 1 13.4530 8.6138 -4.8123 24 6 3.9477 -0.5327 0.0000 25 6 5.3335 -1.1250 0.0001 26 16 2.5065 -1.4427 0.0001 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.8614 2.0939 -0.0004 31 1 2.5848 3.6203 -0.8581 32 1 3.5116 3.8059 -2.3664 33 1 2.9394 2.1965 -1.8657 34 1 5.2246 4.9173 -1.0280 35 1 6.2152 3.9274 0.0706 36 1 6.9995 2.5755 -1.8546 37 1 6.0088 3.5655 -2.9532 38 1 8.1597 4.6200 -1.2360 39 1 9.0091 3.2533 -3.0579 40 1 8.0177 4.2430 -4.1561 41 1 10.6106 4.4576 -4.8597 42 1 13.2805 4.9874 -6.7913 43 1 5.2636 -2.2127 -0.0004 44 1 5.8696 -0.7949 -0.8898 45 1 5.8693 -0.7956 0.8902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753209806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:12 Heat of formation + Delta-G solvation = -64.033340 kcal Electronic energy + Delta-G solvation = -26064.580076 eV Core-core repulsion = 22207.646468 eV Total energy + Delta-G solvation = -3856.933609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31420 -40.18453 -38.36715 -37.49788 -36.27718 -35.71524 -34.02774 -33.29941 -31.41448 -30.10678 -28.18108 -27.71332 -26.31561 -25.47714 -24.51197 -22.99513 -21.21447 -20.89989 -19.98118 -19.74388 -18.26001 -17.96629 -17.55025 -17.21631 -16.94560 -16.53222 -16.27412 -16.00142 -15.61079 -15.36159 -15.06497 -14.86882 -14.82038 -14.35956 -14.21940 -14.15242 -13.85944 -13.85498 -13.76898 -13.54084 -13.38217 -13.13389 -12.95202 -12.83947 -12.77654 -12.57742 -12.43596 -12.40874 -12.13056 -12.12319 -11.78435 -11.52688 -11.00588 -10.41772 -10.04030 -9.81644 -9.54370 -9.47276 -9.34011 -8.48260 -5.97427 -0.18715 0.50722 0.88894 1.04405 1.37329 1.41178 1.54344 1.82825 2.01593 2.11582 2.28990 2.94947 3.18427 3.47518 3.59641 3.68542 3.95110 4.04177 4.11640 4.22041 4.26183 4.29591 4.43569 4.45413 4.48884 4.52638 4.53573 4.57960 4.67712 4.74833 4.82389 4.86236 4.92844 4.95002 5.03506 5.08354 5.19516 5.39064 5.40772 5.44030 5.80182 6.03203 6.23876 6.29278 6.57407 7.04827 7.10146 7.52840 8.07962 8.69172 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.001744 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.816144 B =16052.872738 C =16463.900276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.198 4.198 3 C -0.120 4.120 4 C -0.182 4.182 5 C 0.573 3.427 6 O -0.578 6.578 7 N -0.604 5.604 8 C 0.070 3.930 9 C 0.123 3.877 10 C 0.057 3.943 11 N -0.674 5.674 12 C 0.066 3.934 13 C 0.437 3.563 14 O -0.622 6.622 15 N -0.572 5.572 16 C -0.336 4.336 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.995 3.005 21 H -0.271 1.271 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.176 4.176 25 C -0.085 4.085 26 S 0.212 5.788 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.168 0.832 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.018 0.982 37 H 0.088 0.912 38 H 0.344 0.656 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.960 -15.677 8.227 33.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.315 4.315 3 C -0.148 4.148 4 C -0.200 4.200 5 C 0.361 3.639 6 O -0.459 6.459 7 N -0.336 5.336 8 C -0.071 4.071 9 C -0.001 4.001 10 C -0.074 4.074 11 N -0.307 5.307 12 C -0.066 4.066 13 C 0.225 3.775 14 O -0.508 6.508 15 N -0.209 5.209 16 C -0.465 4.465 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.819 3.181 21 H -0.197 1.197 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.296 4.296 25 C -0.143 4.143 26 S 0.479 5.521 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.186 0.814 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.106 0.894 38 H 0.162 0.838 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -29.021 -16.273 8.560 34.355 hybrid contribution 2.084 1.069 -0.052 2.343 sum -26.937 -15.204 8.508 32.080 Atomic orbital electron populations 1.20475 0.85146 1.04357 1.04111 1.24713 1.01792 0.95437 1.09543 1.21340 0.89252 1.00894 1.03316 1.20069 0.94385 0.92482 1.13031 1.18147 0.85451 0.81582 0.78683 1.90772 1.32566 1.78897 1.43640 1.47747 1.17684 1.21125 1.47029 1.22306 0.84360 1.03480 0.96986 1.21296 0.88548 0.92210 0.98014 1.22246 0.92806 0.92193 1.00111 1.60040 1.13804 1.49186 1.07639 1.21527 0.92579 0.95200 0.97313 1.20788 0.84837 0.88694 0.83192 1.90492 1.78159 1.38424 1.43769 1.41918 1.23336 1.26443 1.29184 1.19692 1.04364 1.07132 1.15341 0.90238 1.26079 1.00649 0.99787 0.94801 1.69673 1.36217 1.32169 1.18019 0.84897 0.77496 0.77814 0.77931 1.19672 1.19386 1.19720 1.24590 1.02983 0.97078 1.04976 1.20379 0.89851 1.01086 1.03021 1.82876 0.91486 1.07921 1.69836 0.89225 0.90367 0.89243 0.81435 0.90281 0.89274 0.89963 0.87618 0.91705 0.96411 0.89384 0.83826 0.92209 0.87306 0.76953 0.91237 0.89183 0.91396 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.35 71.24 0.74 0.35 16 2 C -0.20 -2.20 6.44 24.51 0.16 -2.04 16 3 C -0.12 -1.66 7.97 22.67 0.18 -1.48 16 4 C -0.18 -3.76 5.17 -19.87 -0.10 -3.86 16 5 C 0.57 14.87 7.23 86.60 0.63 15.50 16 6 O -0.58 -19.80 15.32 -4.13 -0.06 -19.86 16 7 N -0.60 -12.62 2.87 -850.93 -2.44 -15.06 16 8 C 0.07 0.84 9.01 127.77 1.15 1.99 16 9 C 0.12 2.92 5.68 86.38 0.49 3.41 16 10 C 0.06 1.49 6.01 86.30 0.52 2.01 16 11 N -0.67 -22.72 6.13 -517.91 -3.17 -25.89 16 12 C 0.07 2.41 6.17 85.56 0.53 2.94 16 13 C 0.44 21.57 7.82 87.66 0.69 22.26 16 14 O -0.62 -35.51 15.78 -3.09 -0.05 -35.55 16 15 N -0.57 -30.14 5.29 -306.98 -1.62 -31.77 16 16 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 17 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 18 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 19 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 20 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C -0.18 -3.40 6.33 25.17 0.16 -3.24 16 25 C -0.09 -1.66 9.33 71.24 0.66 -1.00 16 26 S 0.21 2.69 22.93 -56.49 -1.30 1.39 16 27 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.17 1.59 6.07 -2.91 -0.02 1.57 16 31 H 0.08 0.64 7.05 -2.39 -0.02 0.62 16 32 H 0.09 0.89 8.03 -2.39 -0.02 0.87 16 33 H 0.08 0.90 6.00 -2.39 -0.01 0.89 16 34 H 0.11 2.19 8.07 -2.39 -0.02 2.17 16 35 H 0.06 1.85 7.36 -2.39 -0.02 1.83 16 36 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.34 12.52 8.43 -89.69 -0.76 11.76 16 39 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 42 H 0.28 14.19 8.31 -92.72 -0.77 13.42 16 43 H 0.09 1.26 8.11 -2.39 -0.02 1.24 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.67 7.58 -2.39 -0.02 1.65 16 Total: -1.00 -75.97 390.13 0.28 -75.69 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.46 Total: 37.59 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 7.08 Total: 17.92 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -6.96 Total: -122.73 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.11 Total: -55.42 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.30 Total: 1.39 kcal Total: -75.97 0.28 -75.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753209806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.659 kcal (2) G-P(sol) polarization free energy of solvation -75.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds