Wall clock time and date at job start Tue Mar 31 2020 23:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32768 * 124.71061 * 2 1 4 4 C 1.44428 * 113.08303 * 180.23388 * 3 2 1 5 5 C 1.47185 * 123.46208 * 179.76843 * 4 3 2 6 6 O 1.21643 * 119.99998 * 179.70441 * 5 4 3 7 7 N 1.34773 * 120.00084 * 359.97438 * 5 4 3 8 8 C 1.46500 * 120.00431 * 179.72617 * 7 5 4 9 9 H 1.09002 * 109.46905 * 34.99910 * 8 7 5 10 10 C 1.52999 * 109.46961 * 275.00501 * 8 7 5 11 11 C 1.52995 * 109.47327 * 155.00306 * 8 7 5 12 12 N 1.46898 * 109.47107 * 305.00013 * 11 8 7 13 13 C 1.46898 * 110.99995 * 180.02562 * 12 11 8 14 14 C 1.50704 * 109.46989 * 179.97438 * 13 12 11 15 15 O 1.21291 * 120.00229 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99655 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99552 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00092 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99599 * 180.02562 * 17 16 14 20 20 N 1.31403 * 120.00318 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99633 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47547 * 89.99825 * 21 19 17 23 23 H 1.48504 * 109.47148 * 209.99839 * 21 19 17 24 24 H 1.48498 * 109.47375 * 329.99413 * 21 19 17 25 25 C 1.36015 * 113.07680 * 359.49828 * 4 3 2 26 26 C 1.50699 * 124.59144 * 180.24838 * 25 4 3 27 27 S 1.70443 * 110.81634 * 0.26946 * 25 4 3 28 28 H 1.09007 * 109.47179 * 180.30704 * 1 2 3 29 29 H 1.08994 * 109.47331 * 300.30427 * 1 2 3 30 30 H 1.08998 * 109.47273 * 60.30749 * 1 2 3 31 31 H 1.08001 * 123.46195 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00112 * 359.73054 * 7 5 4 33 33 H 1.08999 * 109.47539 * 299.99611 * 10 8 7 34 34 H 1.08995 * 109.47658 * 59.99810 * 10 8 7 35 35 H 1.09003 * 109.47063 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47185 * 65.00268 * 11 8 7 37 37 H 1.09007 * 109.46938 * 185.00319 * 11 8 7 38 38 H 1.00892 * 111.00060 * 56.04789 * 12 11 8 39 39 H 1.08996 * 109.47477 * 299.99786 * 13 12 11 40 40 H 1.09004 * 109.47245 * 60.00092 * 13 12 11 41 41 H 0.96995 * 120.00260 * 0.02562 * 16 14 13 42 42 H 0.97001 * 120.00353 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.47203 * 90.00107 * 26 25 4 44 44 H 1.09001 * 109.47163 * 210.00705 * 26 25 4 45 45 H 1.09007 * 109.47090 * 330.00141 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 -0.0054 5 6 4.7200 1.8394 -0.0115 6 8 5.8945 1.5228 -0.0104 7 7 4.3732 3.1418 -0.0127 8 6 5.4107 4.1762 -0.0126 9 1 6.2628 3.8361 -0.6012 10 6 5.8596 4.4481 1.4245 11 6 4.8493 5.4616 -0.6235 12 7 4.3091 5.1739 -1.9589 13 6 3.7607 6.3880 -2.5778 14 6 3.2177 6.0544 -3.9434 15 8 3.2809 4.9170 -4.3600 16 7 2.6609 7.0198 -4.7015 17 6 2.1665 6.7162 -5.9436 18 1 2.2228 5.7034 -6.3146 19 6 1.5929 7.7115 -6.7253 20 7 1.5239 8.9436 -6.2739 21 14 0.9186 7.2977 -8.4175 22 1 -0.5106 6.9118 -8.3002 23 1 1.0399 8.4841 -9.3024 24 1 1.6904 6.1683 -8.9954 25 6 3.9477 -0.5327 0.0015 26 6 5.3334 -1.1250 0.0035 27 16 2.5064 -1.4427 0.0071 28 1 -0.3634 -1.0277 0.0055 29 1 -0.3634 0.5185 0.8872 30 1 -0.3634 0.5090 -0.8927 31 1 1.8614 2.0940 -0.0004 32 1 3.4367 3.3943 -0.0135 33 1 5.0075 4.7882 2.0132 34 1 6.2595 3.5324 1.8598 35 1 6.6318 5.2174 1.4245 36 1 4.0549 5.8500 0.0138 37 1 5.6446 6.2026 -0.7052 38 1 3.6147 4.4431 -1.9183 39 1 2.9588 6.7833 -1.9542 40 1 4.5487 7.1351 -2.6730 41 1 2.6100 7.9293 -4.3682 42 1 1.1232 9.6384 -6.8194 43 1 5.6684 -1.2622 1.0316 44 1 5.3173 -2.0888 -0.5052 45 1 6.0168 -0.4521 -0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754233462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:12 Heat of formation + Delta-G solvation = -53.132876 kcal Electronic energy + Delta-G solvation = -26553.210480 eV Core-core repulsion = 22696.749551 eV Total energy + Delta-G solvation = -3856.460929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17452 -38.37258 -37.56430 -36.53259 -34.30688 -33.67178 -33.13349 -31.39222 -31.16241 -29.33019 -27.60358 -25.71048 -25.00542 -24.01797 -23.19649 -21.31895 -20.71858 -19.48174 -19.17191 -17.90310 -17.41662 -16.89715 -16.15670 -15.99711 -15.36882 -15.15878 -14.68627 -14.52848 -14.42050 -14.09917 -13.91965 -13.85337 -13.57606 -13.41496 -13.29444 -13.12426 -13.04589 -12.63667 -12.46385 -12.19391 -11.95226 -11.80493 -11.74200 -11.65929 -11.61310 -11.46626 -11.13914 -11.07173 -10.96907 -10.39928 -10.22661 -9.75506 -9.51888 -9.17412 -8.79149 -8.57431 -8.47304 -8.09278 -7.97034 -6.42747 -3.83501 0.63825 1.26848 1.68686 1.81238 3.17045 3.18447 3.25887 3.32252 3.33914 3.89537 4.05079 4.27778 4.41000 4.65807 4.78131 4.91446 5.00639 5.02129 5.13079 5.18428 5.22178 5.27312 5.28111 5.38674 5.43455 5.47242 5.56493 5.59164 5.62617 5.75056 5.77781 5.83241 5.93739 5.96888 6.05335 6.13278 6.16234 6.25089 6.47934 7.14771 7.45070 7.54388 7.59557 8.05357 8.21300 8.60363 9.17078 9.53205 10.04818 10.75029 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010889 B = 0.002580 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.712482 B =10849.380487 C =12507.291201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.199 4.199 3 C -0.111 4.111 4 C -0.169 4.169 5 C 0.587 3.413 6 O -0.537 6.537 7 N -0.717 5.717 8 C 0.145 3.855 9 H 0.099 0.901 10 C -0.161 4.161 11 C 0.050 3.950 12 N -0.667 5.667 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.581 6.581 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.141 4.141 26 C -0.094 4.094 27 S 0.173 5.827 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.396 0.604 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.348 0.652 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 -13.792 19.062 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.316 4.316 3 C -0.139 4.139 4 C -0.186 4.186 5 C 0.373 3.627 6 O -0.416 6.416 7 N -0.368 5.368 8 C 0.041 3.959 9 H 0.117 0.883 10 C -0.220 4.220 11 C -0.080 4.080 12 N -0.300 5.300 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.465 6.465 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.262 4.262 26 C -0.153 4.153 27 S 0.439 5.561 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.231 0.769 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.106 0.894 38 H 0.168 0.832 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.062 -16.068 18.365 24.489 hybrid contribution -1.430 2.439 -0.206 2.835 sum 0.632 -13.629 18.159 22.713 Atomic orbital electron populations 1.20349 0.87439 1.02940 1.03367 1.24251 1.00367 0.95977 1.10959 1.21067 0.91016 0.99432 1.02408 1.20070 0.93333 0.92989 1.12167 1.17474 0.87697 0.81949 0.75564 1.90714 1.18775 1.81703 1.50440 1.45856 1.10082 1.05493 1.75356 1.21043 0.91752 0.86775 0.96364 0.88300 1.22146 1.01460 1.02355 0.95998 1.22310 0.99719 0.96424 0.89523 1.59998 1.41818 1.09010 1.19175 1.21696 0.98566 0.92867 0.95145 1.19807 0.84210 0.86406 0.87068 1.90537 1.61281 1.20934 1.73787 1.41860 1.52205 1.10093 1.15882 1.19707 1.34527 0.96947 0.91688 0.87937 1.25255 0.97710 0.94785 1.00167 1.69607 1.45244 1.00877 1.38642 0.85862 0.79133 0.77994 0.81343 1.20428 1.20905 1.19372 1.24464 1.01773 0.96646 1.03290 1.20635 0.90429 1.00829 1.03376 1.82984 0.93482 1.08661 1.70976 0.91440 0.90517 0.90148 0.83654 0.76940 0.92602 0.91879 0.91369 0.95031 0.89400 0.83247 0.93887 0.89444 0.77475 0.91871 0.90419 0.91655 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.35 36.00 0.37 -0.21 16 2 C -0.20 -1.92 6.44 -36.18 -0.23 -2.15 16 3 C -0.11 -1.18 9.75 -39.02 -0.38 -1.56 16 4 C -0.17 -2.12 5.98 -104.63 -0.63 -2.74 16 5 C 0.59 8.12 7.75 -12.63 -0.10 8.02 16 6 O -0.54 -8.71 13.72 5.24 0.07 -8.64 16 7 N -0.72 -8.43 4.33 -54.96 -0.24 -8.67 16 8 C 0.15 1.69 2.88 -67.93 -0.20 1.49 16 9 H 0.10 1.40 7.58 -51.93 -0.39 1.00 16 10 C -0.16 -1.53 9.48 37.16 0.35 -1.17 16 11 C 0.05 0.59 5.30 -3.83 -0.02 0.57 16 12 N -0.67 -10.65 6.12 -115.06 -0.70 -11.36 16 13 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 14 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 15 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 16 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 17 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 18 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 21 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.14 -1.64 6.34 -35.11 -0.22 -1.87 16 26 C -0.09 -1.01 9.60 36.01 0.35 -0.66 16 27 S 0.17 1.61 22.94 -107.50 -2.47 -0.85 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.15 1.28 7.10 -52.49 -0.37 0.91 16 32 H 0.40 3.97 6.70 -40.82 -0.27 3.70 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.35 5.74 7.28 -39.30 -0.29 5.45 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.11 1.37 5.94 -51.93 -0.31 1.06 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -33.55 390.80 -9.32 -42.87 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -6.54 Total: 15.82 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.06 Total: 2.83 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.28 Total: -58.10 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.16 Total: -24.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.47 Total: -0.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.55 -9.32 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754233462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.264 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds