Wall clock time and date at job start Tue Mar 31 2020 23:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32768 * 124.71061 * 2 1 4 4 C 1.44428 * 113.08303 * 180.23388 * 3 2 1 5 5 C 1.47185 * 123.46208 * 179.76843 * 4 3 2 6 6 O 1.21643 * 119.99998 * 179.70441 * 5 4 3 7 7 N 1.34773 * 120.00084 * 359.97438 * 5 4 3 8 8 C 1.46500 * 120.00431 * 179.72617 * 7 5 4 9 9 H 1.09002 * 109.46905 * 34.99910 * 8 7 5 10 10 C 1.52999 * 109.46961 * 275.00501 * 8 7 5 11 11 C 1.52995 * 109.47327 * 155.00306 * 8 7 5 12 12 N 1.46898 * 109.47107 * 305.00013 * 11 8 7 13 13 C 1.46898 * 110.99995 * 180.02562 * 12 11 8 14 14 C 1.50704 * 109.46989 * 179.97438 * 13 12 11 15 15 O 1.21291 * 120.00229 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99655 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99552 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00092 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99599 * 180.02562 * 17 16 14 20 20 N 1.31403 * 120.00318 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99633 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47547 * 89.99825 * 21 19 17 23 23 H 1.48504 * 109.47148 * 209.99839 * 21 19 17 24 24 H 1.48498 * 109.47375 * 329.99413 * 21 19 17 25 25 C 1.36015 * 113.07680 * 359.49828 * 4 3 2 26 26 C 1.50699 * 124.59144 * 180.24838 * 25 4 3 27 27 S 1.70443 * 110.81634 * 0.26946 * 25 4 3 28 28 H 1.09007 * 109.47179 * 180.30704 * 1 2 3 29 29 H 1.08994 * 109.47331 * 300.30427 * 1 2 3 30 30 H 1.08998 * 109.47273 * 60.30749 * 1 2 3 31 31 H 1.08001 * 123.46195 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00112 * 359.73054 * 7 5 4 33 33 H 1.08999 * 109.47539 * 299.99611 * 10 8 7 34 34 H 1.08995 * 109.47658 * 59.99810 * 10 8 7 35 35 H 1.09003 * 109.47063 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47185 * 65.00268 * 11 8 7 37 37 H 1.09007 * 109.46938 * 185.00319 * 11 8 7 38 38 H 1.00892 * 111.00060 * 56.04789 * 12 11 8 39 39 H 1.08996 * 109.47477 * 299.99786 * 13 12 11 40 40 H 1.09004 * 109.47245 * 60.00092 * 13 12 11 41 41 H 0.96995 * 120.00260 * 0.02562 * 16 14 13 42 42 H 0.97001 * 120.00353 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.47203 * 90.00107 * 26 25 4 44 44 H 1.09001 * 109.47163 * 210.00705 * 26 25 4 45 45 H 1.09007 * 109.47090 * 330.00141 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 -0.0054 5 6 4.7200 1.8394 -0.0115 6 8 5.8945 1.5228 -0.0104 7 7 4.3732 3.1418 -0.0127 8 6 5.4107 4.1762 -0.0126 9 1 6.2628 3.8361 -0.6012 10 6 5.8596 4.4481 1.4245 11 6 4.8493 5.4616 -0.6235 12 7 4.3091 5.1739 -1.9589 13 6 3.7607 6.3880 -2.5778 14 6 3.2177 6.0544 -3.9434 15 8 3.2809 4.9170 -4.3600 16 7 2.6609 7.0198 -4.7015 17 6 2.1665 6.7162 -5.9436 18 1 2.2228 5.7034 -6.3146 19 6 1.5929 7.7115 -6.7253 20 7 1.5239 8.9436 -6.2739 21 14 0.9186 7.2977 -8.4175 22 1 -0.5106 6.9118 -8.3002 23 1 1.0399 8.4841 -9.3024 24 1 1.6904 6.1683 -8.9954 25 6 3.9477 -0.5327 0.0015 26 6 5.3334 -1.1250 0.0035 27 16 2.5064 -1.4427 0.0071 28 1 -0.3634 -1.0277 0.0055 29 1 -0.3634 0.5185 0.8872 30 1 -0.3634 0.5090 -0.8927 31 1 1.8614 2.0940 -0.0004 32 1 3.4367 3.3943 -0.0135 33 1 5.0075 4.7882 2.0132 34 1 6.2595 3.5324 1.8598 35 1 6.6318 5.2174 1.4245 36 1 4.0549 5.8500 0.0138 37 1 5.6446 6.2026 -0.7052 38 1 3.6147 4.4431 -1.9183 39 1 2.9588 6.7833 -1.9542 40 1 4.5487 7.1351 -2.6730 41 1 2.6100 7.9293 -4.3682 42 1 1.1232 9.6384 -6.8194 43 1 5.6684 -1.2622 1.0316 44 1 5.3173 -2.0888 -0.5052 45 1 6.0168 -0.4521 -0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754233462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:11 Heat of formation + Delta-G solvation = -77.296576 kcal Electronic energy + Delta-G solvation = -26554.258297 eV Core-core repulsion = 22696.749551 eV Total energy + Delta-G solvation = -3857.508746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16819 -40.15050 -38.51861 -37.62800 -36.04385 -35.14189 -33.92582 -33.26678 -32.29088 -30.08610 -28.98250 -26.77590 -26.41226 -24.99083 -24.47245 -22.20225 -21.67964 -21.08264 -20.27902 -19.89716 -18.30177 -18.06857 -17.41997 -17.14606 -16.77367 -16.37000 -16.22902 -15.94671 -15.50650 -15.37518 -15.18081 -14.85002 -14.69679 -14.34439 -14.22571 -14.14044 -14.00268 -13.83138 -13.55840 -13.34941 -13.10022 -13.03490 -12.90323 -12.80249 -12.68037 -12.54202 -12.49294 -12.41995 -12.13184 -11.95042 -11.88445 -11.51292 -10.78612 -10.37772 -10.14349 -10.01880 -9.56495 -9.37550 -9.32757 -8.47313 -5.95869 -0.22230 0.49547 0.88856 0.95501 1.37317 1.41451 1.54049 2.05086 2.23715 2.29144 2.35986 2.89093 3.20181 3.49310 3.64157 3.78793 3.87640 4.11617 4.19013 4.24106 4.27309 4.37136 4.49722 4.50621 4.58889 4.61583 4.63580 4.67254 4.74097 4.76906 4.78121 4.86998 5.03884 5.08698 5.14197 5.23235 5.28249 5.38362 5.40446 5.54363 5.86529 6.08619 6.35195 6.50546 6.60055 7.12498 7.21862 7.56077 8.11935 8.70048 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010889 B = 0.002580 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.712482 B =10849.380487 C =12507.291201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.203 4.203 3 C -0.125 4.125 4 C -0.192 4.192 5 C 0.578 3.422 6 O -0.572 6.572 7 N -0.709 5.709 8 C 0.147 3.853 9 H 0.067 0.933 10 C -0.151 4.151 11 C 0.057 3.943 12 N -0.688 5.688 13 C 0.065 3.935 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.334 4.334 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.269 1.269 23 H -0.270 1.270 24 H -0.275 1.275 25 C -0.164 4.164 26 C -0.092 4.092 27 S 0.216 5.784 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.405 0.595 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.342 0.658 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -13.275 20.040 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.320 4.320 3 C -0.153 4.153 4 C -0.209 4.209 5 C 0.366 3.634 6 O -0.453 6.453 7 N -0.360 5.360 8 C 0.042 3.958 9 H 0.086 0.914 10 C -0.209 4.209 11 C -0.072 4.072 12 N -0.321 5.321 13 C -0.067 4.067 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.464 4.464 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.194 1.194 23 H -0.195 1.195 24 H -0.200 1.200 25 C -0.285 4.285 26 C -0.150 4.150 27 S 0.482 5.518 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.177 0.823 32 H 0.241 0.759 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.161 0.839 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.661 -15.507 19.374 24.825 hybrid contribution -0.991 2.223 -0.481 2.481 sum -0.330 -13.284 18.894 23.099 Atomic orbital electron populations 1.20454 0.85528 1.04078 1.04061 1.24679 1.01745 0.95873 1.09655 1.21196 0.90201 1.00579 1.03287 1.20192 0.93982 0.93071 1.13645 1.17814 0.87642 0.82802 0.75171 1.90691 1.20138 1.82301 1.52217 1.45823 1.10685 1.05020 1.74475 1.21020 0.90763 0.86639 0.97369 0.91429 1.22053 1.02505 1.02091 0.94278 1.22370 1.00676 0.96513 0.87682 1.59972 1.41731 1.08466 1.21952 1.21559 0.99848 0.93753 0.91543 1.20947 0.82533 0.85325 0.88877 1.90507 1.62559 1.22769 1.75341 1.41917 1.52754 1.10693 1.15565 1.19644 1.36816 0.96344 0.93581 0.90547 1.26004 0.97284 0.94511 1.03303 1.69659 1.45157 1.01363 1.39848 0.84960 0.78605 0.77879 0.77099 1.19437 1.19508 1.20008 1.24763 1.03188 0.97135 1.03395 1.20581 0.89754 1.00955 1.03688 1.82763 0.91667 1.07679 1.69680 0.90121 0.89027 0.90138 0.82348 0.75858 0.90868 0.93561 0.89719 0.92227 0.88067 0.83907 0.90855 0.87546 0.76883 0.91261 0.89715 0.89804 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.35 71.24 0.74 -0.27 16 2 C -0.20 -3.64 6.44 24.51 0.16 -3.49 16 3 C -0.12 -2.58 9.75 22.67 0.22 -2.36 16 4 C -0.19 -4.89 5.98 -19.87 -0.12 -5.01 16 5 C 0.58 16.62 7.75 86.59 0.67 17.29 16 6 O -0.57 -19.69 13.72 -4.17 -0.06 -19.75 16 7 N -0.71 -16.66 4.33 -446.03 -1.93 -18.59 16 8 C 0.15 3.32 2.88 44.99 0.13 3.45 16 9 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 10 C -0.15 -2.65 9.48 71.98 0.68 -1.96 16 11 C 0.06 1.19 5.30 86.30 0.46 1.65 16 12 N -0.69 -21.18 6.12 -517.94 -3.17 -24.34 16 13 C 0.07 2.13 6.17 85.56 0.53 2.66 16 14 C 0.44 20.60 7.82 87.66 0.69 21.29 16 15 O -0.63 -35.08 15.78 -3.06 -0.05 -35.12 16 16 N -0.57 -29.12 5.29 -306.97 -1.62 -30.74 16 17 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 20 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 21 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 25 C -0.16 -3.85 6.34 25.17 0.16 -3.69 16 26 C -0.09 -2.02 9.60 71.24 0.68 -1.33 16 27 S 0.22 3.77 22.94 -56.49 -1.30 2.48 16 28 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.16 2.67 7.10 -2.91 -0.02 2.65 16 32 H 0.41 7.85 6.70 -92.71 -0.62 7.23 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.34 11.12 7.28 -89.70 -0.65 10.47 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 41 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 42 H 0.28 13.92 8.31 -92.71 -0.77 13.14 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 2.20 5.94 -2.38 -0.01 2.19 16 Total: -1.00 -74.60 390.80 -0.50 -75.10 By element: Atomic # 1 Polarization: 46.08 SS G_CDS: -0.96 Total: 45.12 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 6.28 Total: 9.90 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -6.44 Total: -122.63 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.11 Total: -54.87 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.30 Total: 2.48 kcal Total: -74.60 -0.50 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754233462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.192 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds