Wall clock time and date at job start Tue Mar 31 2020 22:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.64992 * 359.69048 * 13 11 10 15 15 C 1.54320 * 107.27206 * 180.96769 * 14 13 11 16 16 C 1.55157 * 102.86305 * 22.52785 * 15 14 13 17 17 H 1.09003 * 111.00292 * 82.38138 * 16 15 14 18 18 C 1.53000 * 111.03605 * 206.21081 * 16 15 14 19 19 C 1.52999 * 109.47221 * 178.66800 * 18 16 15 20 20 N 1.46901 * 109.47065 * 180.02562 * 19 18 16 21 21 C 1.46900 * 111.00109 * 180.02562 * 20 19 18 22 22 C 1.50694 * 109.47392 * 179.97438 * 21 20 19 23 23 C 1.41375 * 126.80541 * 94.99906 * 22 21 20 24 24 C 1.35443 * 103.98869 * 180.02562 * 23 22 21 25 25 O 1.34039 * 106.45092 * 359.97438 * 24 23 22 26 26 N 1.20922 * 111.56029 * 359.71307 * 25 24 23 27 27 C 1.47422 * 125.64362 * 179.97438 * 13 11 10 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 30 30 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 31 31 H 1.08996 * 109.88053 * 300.51294 * 14 13 11 32 32 H 1.09002 * 109.88106 * 61.68209 * 14 13 11 33 33 H 1.08996 * 110.92585 * 264.10675 * 15 14 13 34 34 H 1.09005 * 110.58558 * 140.78608 * 15 14 13 35 35 H 1.09006 * 109.47427 * 298.67161 * 18 16 15 36 36 H 1.09003 * 109.47061 * 58.66642 * 18 16 15 37 37 H 1.08993 * 109.46957 * 300.00373 * 19 18 16 38 38 H 1.09004 * 109.46725 * 60.00524 * 19 18 16 39 39 H 1.00902 * 110.99996 * 303.95300 * 20 19 18 40 40 H 1.09001 * 109.46851 * 299.99895 * 21 20 19 41 41 H 1.09000 * 109.47135 * 59.99881 * 21 20 19 42 42 H 1.07998 * 128.00558 * 0.03419 * 23 22 21 43 43 H 1.08007 * 126.77962 * 180.02562 * 24 23 22 44 44 H 1.09006 * 110.36753 * 274.67009 * 27 13 11 45 45 H 1.09003 * 110.37314 * 36.99580 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3110 -6.2451 -0.0051 15 6 4.8664 -7.6847 -0.0272 16 6 3.6844 -8.5019 -0.6125 17 1 3.6698 -8.4431 -1.7008 18 6 3.7391 -9.9580 -0.1458 19 6 2.5418 -10.7215 -0.7155 20 7 2.5940 -12.1193 -0.2668 21 6 1.4576 -12.8849 -0.7963 22 6 1.5452 -14.3108 -0.3165 23 6 0.9052 -14.8642 0.8161 24 6 1.2981 -16.1603 0.8135 25 8 2.1005 -16.3116 -0.2495 26 7 2.2206 -15.2784 -0.8662 27 6 2.4655 -7.7679 0.0003 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7314 0.8906 31 1 4.6431 -5.7040 -0.8911 32 1 4.6516 -5.7323 0.8945 33 1 5.1087 -8.0241 0.9798 34 1 5.7390 -7.7490 -0.6773 35 1 4.6633 -10.4175 -0.4963 36 1 3.7068 -9.9919 0.9432 37 1 1.6178 -10.2620 -0.3650 38 1 2.5742 -10.6876 -1.8045 39 1 3.4701 -12.5490 -0.5236 40 1 0.5257 -12.4403 -0.4470 41 1 1.4830 -12.8664 -1.8858 42 1 0.2537 -14.3682 1.5203 43 1 1.0193 -16.9220 1.5267 44 1 2.2873 -8.1131 1.0188 45 1 1.5795 -7.9251 -0.6149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754903930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:24 Heat of formation + Delta-G solvation = 23.368915 kcal Electronic energy + Delta-G solvation = -25335.181089 eV Core-core repulsion = 21482.037526 eV Total energy + Delta-G solvation = -3853.143562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.35319 -39.89746 -37.89741 -36.91650 -34.61945 -32.90732 -32.42411 -32.03183 -30.23836 -29.56473 -27.83080 -25.76852 -25.37787 -23.68980 -23.55131 -22.08592 -21.44871 -20.44280 -19.29216 -18.28636 -17.96503 -17.70315 -16.76698 -16.53850 -16.06956 -15.69427 -15.21654 -15.05738 -14.80110 -14.49151 -14.30169 -13.98623 -13.87211 -13.68459 -13.21329 -13.03519 -12.86558 -12.69173 -12.57540 -12.34323 -12.19353 -11.85809 -11.76388 -11.56313 -11.18798 -11.06119 -11.01970 -10.88419 -10.85891 -10.74683 -10.58820 -10.09024 -9.80964 -9.39287 -9.06181 -8.96512 -8.47390 -8.22780 -6.49724 -6.21206 -3.91815 1.07150 1.75949 2.83996 2.94008 3.08284 3.22548 3.26565 3.30743 3.54280 3.64161 3.88311 4.09472 4.19107 4.22369 4.41946 4.57801 4.71631 4.77857 4.82429 4.90886 4.91809 5.08443 5.11807 5.13399 5.14005 5.16891 5.21094 5.32708 5.45326 5.51674 5.55067 5.57671 5.66148 5.68851 5.71530 5.77041 5.85248 5.97385 6.07972 6.15399 6.42692 6.45955 6.81798 7.59909 7.70069 7.81786 8.35676 8.57782 9.23998 10.86246 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.001521 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.728632 B =18410.463521 C =19062.174524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.517 6.517 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.125 4.125 16 C -0.101 4.101 17 H 0.085 0.915 18 C -0.103 4.103 19 C 0.055 3.945 20 N -0.684 5.684 21 C 0.136 3.864 22 C 0.020 3.980 23 C -0.217 4.217 24 C -0.062 4.062 25 O 0.099 5.901 26 N -0.364 5.364 27 C 0.112 3.888 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.343 0.657 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.173 0.827 43 H 0.217 0.783 44 H 0.066 0.934 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.761 -30.628 0.937 31.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.391 6.391 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.163 4.163 16 C -0.121 4.121 17 H 0.103 0.897 18 C -0.141 4.141 19 C -0.074 4.074 20 N -0.316 5.316 21 C 0.007 3.993 22 C -0.139 4.139 23 C -0.239 4.239 24 C -0.144 4.144 25 O 0.032 5.968 26 N -0.068 5.068 27 C -0.011 4.011 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.161 0.839 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.191 0.809 43 H 0.234 0.766 44 H 0.085 0.915 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.218 -30.675 0.444 31.516 hybrid contribution 1.695 1.427 -0.145 2.221 sum 8.913 -29.248 0.299 30.577 Atomic orbital electron populations 1.70022 1.05952 1.27437 1.46865 1.24992 0.95023 0.99006 0.94530 0.86166 0.79407 0.81564 0.78352 1.20260 1.19703 1.20742 1.22862 0.94898 0.91623 1.58954 0.90943 1.85390 1.05034 0.96348 1.96712 1.23507 1.06401 0.95036 1.04764 1.20020 0.85682 0.85498 0.75156 1.90701 1.14952 1.85171 1.48308 1.48509 1.06527 1.05775 1.75665 1.21991 0.80578 0.97537 1.02105 1.22683 0.97750 0.93794 1.02064 1.22373 0.95090 0.93949 1.00698 0.89694 1.21471 0.97629 0.93087 1.01953 1.22074 1.00168 0.87545 0.97582 1.60484 1.05145 1.02529 1.63432 1.20195 0.96381 0.85332 0.97438 1.23535 0.97976 0.97265 0.95159 1.22766 1.05922 0.94340 1.00870 1.26054 0.95695 0.99351 0.93274 1.84836 1.51494 1.29381 1.31109 1.73853 1.20901 0.93401 1.18647 1.22231 0.97508 0.80536 1.00785 0.92189 0.89355 0.89321 0.91331 0.91300 0.90319 0.90068 0.91512 0.90442 0.90116 0.94721 0.83905 0.88390 0.93205 0.80948 0.76645 0.91536 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.07 5.35 36.01 0.19 -2.88 16 11 C 0.55 10.83 7.87 -10.98 -0.09 10.74 16 12 O -0.52 -12.22 16.12 5.56 0.09 -12.13 16 13 N -0.63 -9.20 3.33 -170.51 -0.57 -9.77 16 14 C 0.10 1.09 6.48 -3.07 -0.02 1.07 16 15 C -0.12 -0.95 6.42 -24.90 -0.16 -1.11 16 16 C -0.10 -0.82 3.07 -88.46 -0.27 -1.09 16 17 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.10 -0.68 4.99 -26.73 -0.13 -0.82 16 19 C 0.06 0.39 5.54 -3.82 -0.02 0.37 16 20 N -0.68 -5.02 6.49 -115.06 -0.75 -5.76 16 21 C 0.14 0.98 6.27 -4.98 -0.03 0.95 16 22 C 0.02 0.16 6.84 -82.10 -0.56 -0.40 16 23 C -0.22 -1.31 11.12 -39.39 -0.44 -1.75 16 24 C -0.06 -0.29 12.30 29.73 0.37 0.07 16 25 O 0.10 0.77 11.20 17.18 0.19 0.96 16 26 N -0.36 -3.42 12.07 33.42 0.40 -3.02 16 27 C 0.11 1.32 5.57 -2.52 -0.01 1.31 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 30 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.08 0.63 7.45 -51.93 -0.39 0.24 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.34 2.49 8.72 -39.29 -0.34 2.14 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.22 0.07 8.06 -52.48 -0.42 -0.36 16 44 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 45 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -36.25 392.61 -9.21 -45.46 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.01 Total: -2.04 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.98 Total: -6.60 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.18 Total: -44.11 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.28 Total: -11.17 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.25 -9.21 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754903930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.832 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds