Wall clock time and date at job start Tue Mar 31 2020 22:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.64992 * 359.69048 * 13 11 10 15 15 C 1.54320 * 107.27206 * 180.96769 * 14 13 11 16 16 C 1.55157 * 102.86305 * 22.52785 * 15 14 13 17 17 H 1.09003 * 111.00292 * 82.38138 * 16 15 14 18 18 C 1.53000 * 111.03605 * 206.21081 * 16 15 14 19 19 C 1.52999 * 109.47221 * 178.66800 * 18 16 15 20 20 N 1.46901 * 109.47065 * 180.02562 * 19 18 16 21 21 C 1.46900 * 111.00109 * 180.02562 * 20 19 18 22 22 C 1.50694 * 109.47392 * 179.97438 * 21 20 19 23 23 C 1.41375 * 126.80541 * 94.99906 * 22 21 20 24 24 C 1.35443 * 103.98869 * 180.02562 * 23 22 21 25 25 O 1.34039 * 106.45092 * 359.97438 * 24 23 22 26 26 N 1.20922 * 111.56029 * 359.71307 * 25 24 23 27 27 C 1.47422 * 125.64362 * 179.97438 * 13 11 10 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 30 30 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 31 31 H 1.08996 * 109.88053 * 300.51294 * 14 13 11 32 32 H 1.09002 * 109.88106 * 61.68209 * 14 13 11 33 33 H 1.08996 * 110.92585 * 264.10675 * 15 14 13 34 34 H 1.09005 * 110.58558 * 140.78608 * 15 14 13 35 35 H 1.09006 * 109.47427 * 298.67161 * 18 16 15 36 36 H 1.09003 * 109.47061 * 58.66642 * 18 16 15 37 37 H 1.08993 * 109.46957 * 300.00373 * 19 18 16 38 38 H 1.09004 * 109.46725 * 60.00524 * 19 18 16 39 39 H 1.00902 * 110.99996 * 303.95300 * 20 19 18 40 40 H 1.09001 * 109.46851 * 299.99895 * 21 20 19 41 41 H 1.09000 * 109.47135 * 59.99881 * 21 20 19 42 42 H 1.07998 * 128.00558 * 0.03419 * 23 22 21 43 43 H 1.08007 * 126.77962 * 180.02562 * 24 23 22 44 44 H 1.09006 * 110.36753 * 274.67009 * 27 13 11 45 45 H 1.09003 * 110.37314 * 36.99580 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3110 -6.2451 -0.0051 15 6 4.8664 -7.6847 -0.0272 16 6 3.6844 -8.5019 -0.6125 17 1 3.6698 -8.4431 -1.7008 18 6 3.7391 -9.9580 -0.1458 19 6 2.5418 -10.7215 -0.7155 20 7 2.5940 -12.1193 -0.2668 21 6 1.4576 -12.8849 -0.7963 22 6 1.5452 -14.3108 -0.3165 23 6 0.9052 -14.8642 0.8161 24 6 1.2981 -16.1603 0.8135 25 8 2.1005 -16.3116 -0.2495 26 7 2.2206 -15.2784 -0.8662 27 6 2.4655 -7.7679 0.0003 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7314 0.8906 31 1 4.6431 -5.7040 -0.8911 32 1 4.6516 -5.7323 0.8945 33 1 5.1087 -8.0241 0.9798 34 1 5.7390 -7.7490 -0.6773 35 1 4.6633 -10.4175 -0.4963 36 1 3.7068 -9.9919 0.9432 37 1 1.6178 -10.2620 -0.3650 38 1 2.5742 -10.6876 -1.8045 39 1 3.4701 -12.5490 -0.5236 40 1 0.5257 -12.4403 -0.4470 41 1 1.4830 -12.8664 -1.8858 42 1 0.2537 -14.3682 1.5203 43 1 1.0193 -16.9220 1.5267 44 1 2.2873 -8.1131 1.0188 45 1 1.5795 -7.9251 -0.6149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754903930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:23 Heat of formation + Delta-G solvation = -2.119480 kcal Electronic energy + Delta-G solvation = -25336.286348 eV Core-core repulsion = 21482.037526 eV Total energy + Delta-G solvation = -3854.248822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.87937 -41.08908 -38.96317 -37.70524 -35.28225 -34.59900 -33.75290 -32.56119 -31.24578 -30.80135 -28.72397 -27.68818 -26.40991 -24.59754 -24.04545 -22.80256 -21.94884 -21.16188 -20.68462 -19.56917 -18.77604 -18.51864 -18.05907 -17.60027 -16.91735 -16.89444 -16.53838 -16.17348 -15.96903 -15.63653 -15.51937 -15.04403 -14.65809 -14.52695 -14.34826 -14.09954 -13.85280 -13.60045 -13.47899 -13.43242 -13.19103 -13.12985 -12.89603 -12.85869 -12.62438 -12.39025 -12.18407 -11.85301 -11.72574 -11.57580 -11.50044 -11.15227 -11.13127 -10.98527 -10.55293 -10.30476 -9.69746 -9.53966 -8.69949 -8.35747 -6.14951 0.62170 1.23208 1.26944 1.42282 1.44544 1.54143 1.55910 2.10271 2.26336 2.47531 2.98384 3.01202 3.21918 3.34275 3.48324 3.63173 3.65707 3.87760 3.93034 4.17928 4.20502 4.27357 4.29202 4.33461 4.40121 4.41633 4.46128 4.47504 4.59528 4.65304 4.66857 4.81307 4.88780 4.91033 4.93803 5.05197 5.11369 5.16621 5.22620 5.35699 5.40299 5.46984 5.85866 6.18536 6.25780 6.38581 7.05149 7.09678 7.33555 8.73644 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.001521 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.728632 B =18410.463521 C =19062.174524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.258 1.258 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.119 4.119 11 C 0.543 3.457 12 O -0.569 6.569 13 N -0.619 5.619 14 C 0.088 3.912 15 C -0.113 4.113 16 C -0.087 4.087 17 H 0.088 0.912 18 C -0.092 4.092 19 C 0.056 3.944 20 N -0.685 5.685 21 C 0.137 3.863 22 C 0.006 3.994 23 C -0.234 4.234 24 C -0.045 4.045 25 O 0.086 5.914 26 N -0.397 5.397 27 C 0.105 3.895 28 H 0.272 0.728 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.344 0.656 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.189 0.811 43 H 0.260 0.740 44 H 0.070 0.930 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.638 -31.564 1.516 33.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.182 1.182 6 H -0.202 1.202 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.270 4.270 11 C 0.332 3.668 12 O -0.448 6.448 13 N -0.353 5.353 14 C -0.034 4.034 15 C -0.150 4.150 16 C -0.107 4.107 17 H 0.106 0.894 18 C -0.130 4.130 19 C -0.072 4.072 20 N -0.317 5.317 21 C 0.007 3.993 22 C -0.153 4.153 23 C -0.256 4.256 24 C -0.126 4.126 25 O 0.021 5.979 26 N -0.104 5.104 27 C -0.017 4.017 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.162 0.838 40 H 0.121 0.879 41 H 0.062 0.938 42 H 0.206 0.794 43 H 0.276 0.724 44 H 0.088 0.912 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.155 -31.664 1.025 33.268 hybrid contribution 0.819 1.548 -0.291 1.775 sum 10.973 -30.116 0.734 32.061 Atomic orbital electron populations 1.70189 1.08014 1.28661 1.47887 1.26148 0.95975 1.03335 0.93611 0.84930 0.78187 0.75862 0.78850 1.19225 1.18152 1.20222 1.23193 0.95331 0.91872 1.59103 0.89921 1.85580 1.10548 0.99296 1.97041 1.23302 1.03382 0.94076 1.06285 1.19790 0.85485 0.86087 0.75469 1.90677 1.17105 1.85819 1.51229 1.48497 1.08012 1.05846 1.72980 1.22385 0.77872 1.00292 1.02876 1.22705 0.97875 0.90949 1.03508 1.22301 0.93301 0.94452 1.00644 0.89408 1.21382 0.98070 0.91817 1.01777 1.22042 1.00043 0.87507 0.97645 1.60482 1.05204 1.02562 1.63429 1.20196 0.96598 0.85342 0.97123 1.23799 0.98207 0.97361 0.95918 1.23072 1.06609 0.95058 1.00854 1.26865 0.93508 0.99913 0.92277 1.84787 1.52167 1.28982 1.31979 1.73848 1.22434 0.94095 1.19994 1.22472 0.98892 0.79195 1.01139 0.91944 0.87655 0.87626 0.90566 0.90542 0.88981 0.87410 0.89676 0.90552 0.91235 0.94637 0.83801 0.87916 0.93777 0.79378 0.72388 0.91178 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.68 9.50 67.96 0.65 -31.03 16 8 H 0.08 4.44 7.80 -2.92 -0.02 4.41 16 9 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 10 C -0.12 -4.99 5.35 71.24 0.38 -4.61 16 11 C 0.54 21.73 7.87 87.66 0.69 22.42 16 12 O -0.57 -28.08 16.12 -3.01 -0.05 -28.13 16 13 N -0.62 -17.57 3.33 -811.77 -2.70 -20.27 16 14 C 0.09 1.66 6.48 86.73 0.56 2.22 16 15 C -0.11 -1.29 6.42 31.78 0.20 -1.09 16 16 C -0.09 -1.20 3.07 -9.40 -0.03 -1.23 16 17 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 18 C -0.09 -0.99 4.99 30.59 0.15 -0.84 16 19 C 0.06 0.74 5.54 86.30 0.48 1.21 16 20 N -0.68 -9.50 6.49 -517.94 -3.36 -12.86 16 21 C 0.14 1.97 6.27 85.56 0.54 2.51 16 22 C 0.01 0.09 6.84 43.57 0.30 0.39 16 23 C -0.23 -2.54 11.12 22.40 0.25 -2.29 16 24 C -0.04 -0.34 12.30 67.17 0.83 0.49 16 25 O 0.09 1.27 11.20 71.64 0.80 2.07 16 26 N -0.40 -7.44 12.07 -49.55 -0.60 -8.04 16 27 C 0.11 2.40 5.57 86.86 0.48 2.88 16 28 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 30 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 0.88 8.04 -2.39 -0.02 0.86 16 34 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.08 0.89 8.10 -2.39 -0.02 0.88 16 37 H 0.07 1.07 7.45 -2.39 -0.02 1.05 16 38 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.34 4.65 8.72 -89.69 -0.78 3.86 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.26 -0.73 8.06 -2.91 -0.02 -0.75 16 44 H 0.07 1.57 8.00 -2.38 -0.02 1.55 16 45 H 0.06 1.55 7.96 -2.39 -0.02 1.53 16 Total: -1.00 -82.77 392.61 1.40 -81.37 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.21 Total: 13.74 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.94 Total: -7.70 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -6.37 Total: -97.31 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: 0.75 Total: -26.06 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -82.77 1.40 -81.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754903930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.254 kcal (2) G-P(sol) polarization free energy of solvation -82.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds