Wall clock time and date at job start Tue Mar 31 2020 22:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48501 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47057 * 299.99518 * 3 2 1 6 6 H 1.48501 * 109.47171 * 59.99515 * 3 2 1 7 7 C 1.38813 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99728 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47343 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.47083 * 180.02562 * 12 11 10 14 14 C 1.42905 * 113.99638 * 180.02562 * 13 12 11 15 15 C 1.53044 * 109.45587 * 209.99778 * 14 13 12 16 16 C 1.53192 * 109.31036 * 178.62733 * 15 14 13 17 17 N 1.46922 * 108.77488 * 54.63797 * 16 15 14 18 18 C 1.34775 * 120.63220 * 126.36857 * 17 16 15 19 19 O 1.21626 * 120.00242 * 185.66865 * 18 17 16 20 20 C 1.47253 * 120.00071 * 5.66925 * 18 17 16 21 21 N 1.30563 * 125.54703 * 220.16569 * 20 18 17 22 22 C 1.30705 * 115.90730 * 179.97438 * 21 20 18 23 23 C 1.34232 * 115.78231 * 0.02562 * 22 21 20 24 24 S 1.71066 * 109.09640 * 0.24088 * 23 22 21 25 25 C 1.46926 * 118.74091 * 306.63973 * 17 16 15 26 26 C 1.52765 * 109.00360 * 53.30999 * 25 17 16 27 27 H 0.97003 * 119.99471 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00177 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47101 * 60.00954 * 10 9 7 30 30 H 1.08994 * 109.47576 * 300.00703 * 10 9 7 31 31 H 1.09001 * 109.47254 * 60.00373 * 11 10 9 32 32 H 1.09005 * 109.47528 * 300.00629 * 11 10 9 33 33 H 1.09002 * 109.47180 * 60.00292 * 12 11 10 34 34 H 1.09000 * 109.47134 * 299.99727 * 12 11 10 35 35 H 1.09002 * 109.46135 * 329.96798 * 14 13 12 36 36 H 1.09006 * 109.49740 * 58.67959 * 15 14 13 37 37 H 1.08994 * 109.49988 * 298.58013 * 15 14 13 38 38 H 1.08997 * 109.58870 * 294.84503 * 16 15 14 39 39 H 1.09002 * 109.70559 * 174.49341 * 16 15 14 40 40 H 1.07997 * 122.10205 * 179.97438 * 22 21 20 41 41 H 1.07997 * 125.44741 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.59030 * 173.14723 * 25 17 16 43 43 H 1.08998 * 109.58492 * 293.57551 * 25 17 16 44 44 H 1.09001 * 109.55933 * 185.55695 * 26 25 17 45 45 H 1.08991 * 109.36007 * 65.50653 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.8287 -6.1447 0.0029 13 8 0.9000 -7.2308 0.0029 14 6 1.5146 -8.5210 0.0041 15 6 0.6061 -9.5191 -0.7175 16 6 1.2833 -10.8929 -0.7443 17 7 1.6291 -11.2767 0.6311 18 6 1.2242 -12.4586 1.1367 19 8 1.4271 -12.7211 2.3068 20 6 0.5361 -13.4322 0.2723 21 7 -0.4846 -14.1680 0.6206 22 6 -0.9499 -14.9714 -0.2995 23 6 -0.3158 -14.9342 -1.4820 24 16 0.9607 -13.7984 -1.3971 25 6 2.4194 -10.3449 1.4471 26 6 1.7341 -8.9796 1.4475 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0016 29 1 2.6852 -3.7142 0.8912 30 1 2.6840 -3.7149 -0.8887 31 1 0.4368 -4.7622 -0.8875 32 1 0.4373 -4.7617 0.8924 33 1 2.4554 -6.2020 0.8929 34 1 2.4553 -6.2029 -0.8871 35 1 2.4744 -8.4665 -0.5097 36 1 0.4312 -9.1797 -1.7385 37 1 -0.3449 -9.5926 -0.1901 38 1 2.1893 -10.8420 -1.3482 39 1 0.6022 -11.6303 -1.1691 40 1 -1.7909 -15.6245 -0.1192 41 1 -0.5682 -15.5294 -2.3470 42 1 2.4856 -10.7193 2.4686 43 1 3.4199 -10.2483 1.0256 44 1 2.3622 -8.2562 1.9675 45 1 0.7726 -9.0581 1.9546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755348265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:04 Heat of formation + Delta-G solvation = -19.061478 kcal Electronic energy + Delta-G solvation = -26023.580641 eV Core-core repulsion = 22168.597159 eV Total energy + Delta-G solvation = -3854.983482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98888 -39.90416 -38.65717 -36.87593 -35.14854 -32.97315 -32.17490 -31.66999 -30.82525 -29.56974 -27.20169 -25.57817 -24.62147 -23.94530 -22.50467 -22.33046 -21.07110 -20.65039 -19.80222 -18.92038 -17.48239 -17.02465 -16.89731 -16.62546 -16.00173 -15.76924 -15.67220 -14.94754 -14.70663 -14.61509 -14.55044 -14.37484 -13.94951 -13.69902 -13.36368 -13.32890 -13.12845 -12.85527 -12.72547 -12.34677 -12.10050 -11.71429 -11.51461 -11.28399 -11.06426 -10.94278 -10.88243 -10.72825 -10.64257 -10.54997 -10.23928 -10.21730 -10.02312 -9.71638 -9.55729 -9.37571 -9.27355 -8.87888 -6.92476 -5.76175 -3.05389 -0.27796 0.49852 1.01763 1.85221 2.10485 2.62742 3.43685 3.44940 3.49595 3.51552 3.57656 4.17950 4.28684 4.45950 4.53106 4.53855 4.60507 4.72399 4.76695 4.77124 4.95413 4.98997 5.06442 5.24402 5.29667 5.34157 5.42483 5.46881 5.54919 5.57297 5.60065 5.73537 5.88308 5.95547 6.00008 6.09183 6.27085 6.36351 6.62526 6.82337 6.86360 7.01659 7.23244 7.47575 7.70238 8.42595 9.53616 10.11615 10.46283 11.46820 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032735 B = 0.001585 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.149739 B =17662.295299 C =17968.150698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.379 6.379 14 C 0.091 3.909 15 C -0.131 4.131 16 C 0.097 3.903 17 N -0.602 5.602 18 C 0.600 3.400 19 O -0.501 6.501 20 C -0.004 4.004 21 N -0.404 5.404 22 C 0.029 3.971 23 C -0.270 4.270 24 S 0.195 5.805 25 C 0.118 3.882 26 C -0.159 4.159 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.182 0.818 41 H 0.186 0.814 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -34.068 -5.696 34.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.298 6.298 14 C 0.032 3.968 15 C -0.169 4.169 16 C -0.027 4.027 17 N -0.337 5.337 18 C 0.383 3.617 19 O -0.374 6.374 20 C -0.281 4.281 21 N -0.120 5.120 22 C -0.126 4.126 23 C -0.411 4.411 24 S 0.449 5.551 25 C -0.004 4.004 26 C -0.198 4.198 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.199 0.801 41 H 0.204 0.796 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.580 -33.660 -5.191 34.246 hybrid contribution -0.535 0.196 -0.038 0.571 sum 3.045 -33.464 -5.229 34.007 Atomic orbital electron populations 1.69681 1.05135 1.25566 1.57749 1.24769 0.95558 0.97767 1.03002 0.86094 0.78742 0.84014 0.77201 1.20543 1.21838 1.21832 1.19287 0.91089 0.84126 1.42686 0.91070 1.42349 1.05975 0.99925 1.89509 1.20510 0.93307 0.85477 0.97811 1.21672 0.99427 0.91839 1.03339 1.22546 0.91874 0.86569 0.99902 1.87954 1.33831 1.13053 1.94966 1.21970 0.96017 0.84079 0.94690 1.21962 0.99841 0.92566 1.02534 1.22125 1.01064 0.97209 0.82261 1.47943 1.53921 1.16839 1.14974 1.16715 0.78460 0.80648 0.85862 1.90866 1.54628 1.76730 1.15213 1.27473 1.00487 1.04284 0.95813 1.66681 1.08530 1.04251 1.32500 1.21881 1.02822 1.00040 0.87904 1.26901 1.02502 1.07016 1.04669 1.84056 1.29482 1.31136 1.10454 1.21621 0.93515 0.87983 0.97271 1.22399 1.02859 0.96122 0.98395 0.93528 0.78178 0.96331 0.96355 0.91183 0.91173 0.93339 0.93317 0.91815 0.89225 0.90242 0.89872 0.89398 0.80147 0.79625 0.88091 0.90507 0.89671 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.05 5.60 -59.91 -0.34 -19.39 16 10 C 0.16 3.16 6.26 -4.05 -0.03 3.14 16 11 C -0.12 -2.08 5.70 -26.73 -0.15 -2.23 16 12 C 0.07 0.88 5.75 37.16 0.21 1.09 16 13 O -0.38 -4.83 9.99 -35.23 -0.35 -5.18 16 14 C 0.09 0.82 2.57 -26.69 -0.07 0.75 16 15 C -0.13 -0.99 5.73 -26.61 -0.15 -1.14 16 16 C 0.10 0.58 5.65 -3.71 -0.02 0.56 16 17 N -0.60 -5.00 2.98 -174.37 -0.52 -5.52 16 18 C 0.60 6.55 7.66 -12.60 -0.10 6.45 16 19 O -0.50 -7.27 16.52 5.25 0.09 -7.18 16 20 C 0.00 -0.04 6.44 -14.43 -0.09 -0.13 16 21 N -0.40 -4.22 10.65 -11.50 -0.12 -4.34 16 22 C 0.03 0.20 11.24 -19.44 -0.22 -0.02 16 23 C -0.27 -1.26 11.09 29.32 0.33 -0.94 16 24 S 0.19 1.02 20.19 -107.50 -2.17 -1.15 16 25 C 0.12 0.91 6.41 -3.93 -0.03 0.89 16 26 C -0.16 -1.39 5.68 -26.83 -0.15 -1.54 16 27 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.38 10.51 7.67 -40.82 -0.31 10.19 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.58 7.84 -51.93 -0.41 0.17 16 34 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.47 4.50 -37.22 -0.17 0.30 16 40 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.19 0.30 8.06 -52.49 -0.42 -0.13 16 42 H 0.10 0.90 6.99 -51.93 -0.36 0.53 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -35.71 381.78 -9.35 -45.06 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.68 Total: 2.99 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.71 Total: -0.65 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.25 Total: -57.15 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.27 Total: -12.36 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.17 Total: -1.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.71 -9.35 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755348265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.999 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds