Wall clock time and date at job start Tue Mar 31 2020 22:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48501 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47057 * 299.99518 * 3 2 1 6 6 H 1.48501 * 109.47171 * 59.99515 * 3 2 1 7 7 C 1.38813 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99728 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47343 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.47083 * 180.02562 * 12 11 10 14 14 C 1.42905 * 113.99638 * 180.02562 * 13 12 11 15 15 C 1.53044 * 109.45587 * 209.99778 * 14 13 12 16 16 C 1.53192 * 109.31036 * 178.62733 * 15 14 13 17 17 N 1.46922 * 108.77488 * 54.63797 * 16 15 14 18 18 C 1.34775 * 120.63220 * 126.36857 * 17 16 15 19 19 O 1.21626 * 120.00242 * 185.66865 * 18 17 16 20 20 C 1.47253 * 120.00071 * 5.66925 * 18 17 16 21 21 N 1.30563 * 125.54703 * 220.16569 * 20 18 17 22 22 C 1.30705 * 115.90730 * 179.97438 * 21 20 18 23 23 C 1.34232 * 115.78231 * 0.02562 * 22 21 20 24 24 S 1.71066 * 109.09640 * 0.24088 * 23 22 21 25 25 C 1.46926 * 118.74091 * 306.63973 * 17 16 15 26 26 C 1.52765 * 109.00360 * 53.30999 * 25 17 16 27 27 H 0.97003 * 119.99471 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00177 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47101 * 60.00954 * 10 9 7 30 30 H 1.08994 * 109.47576 * 300.00703 * 10 9 7 31 31 H 1.09001 * 109.47254 * 60.00373 * 11 10 9 32 32 H 1.09005 * 109.47528 * 300.00629 * 11 10 9 33 33 H 1.09002 * 109.47180 * 60.00292 * 12 11 10 34 34 H 1.09000 * 109.47134 * 299.99727 * 12 11 10 35 35 H 1.09002 * 109.46135 * 329.96798 * 14 13 12 36 36 H 1.09006 * 109.49740 * 58.67959 * 15 14 13 37 37 H 1.08994 * 109.49988 * 298.58013 * 15 14 13 38 38 H 1.08997 * 109.58870 * 294.84503 * 16 15 14 39 39 H 1.09002 * 109.70559 * 174.49341 * 16 15 14 40 40 H 1.07997 * 122.10205 * 179.97438 * 22 21 20 41 41 H 1.07997 * 125.44741 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.59030 * 173.14723 * 25 17 16 43 43 H 1.08998 * 109.58492 * 293.57551 * 25 17 16 44 44 H 1.09001 * 109.55933 * 185.55695 * 26 25 17 45 45 H 1.08991 * 109.36007 * 65.50653 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.8287 -6.1447 0.0029 13 8 0.9000 -7.2308 0.0029 14 6 1.5146 -8.5210 0.0041 15 6 0.6061 -9.5191 -0.7175 16 6 1.2833 -10.8929 -0.7443 17 7 1.6291 -11.2767 0.6311 18 6 1.2242 -12.4586 1.1367 19 8 1.4271 -12.7211 2.3068 20 6 0.5361 -13.4322 0.2723 21 7 -0.4846 -14.1680 0.6206 22 6 -0.9499 -14.9714 -0.2995 23 6 -0.3158 -14.9342 -1.4820 24 16 0.9607 -13.7984 -1.3971 25 6 2.4194 -10.3449 1.4471 26 6 1.7341 -8.9796 1.4475 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0016 29 1 2.6852 -3.7142 0.8912 30 1 2.6840 -3.7149 -0.8887 31 1 0.4368 -4.7622 -0.8875 32 1 0.4373 -4.7617 0.8924 33 1 2.4554 -6.2020 0.8929 34 1 2.4553 -6.2029 -0.8871 35 1 2.4744 -8.4665 -0.5097 36 1 0.4312 -9.1797 -1.7385 37 1 -0.3449 -9.5926 -0.1901 38 1 2.1893 -10.8420 -1.3482 39 1 0.6022 -11.6303 -1.1691 40 1 -1.7909 -15.6245 -0.1192 41 1 -0.5682 -15.5294 -2.3470 42 1 2.4856 -10.7193 2.4686 43 1 3.4199 -10.2483 1.0256 44 1 2.3622 -8.2562 1.9675 45 1 0.7726 -9.0581 1.9546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755348265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:03 Heat of formation + Delta-G solvation = -44.805235 kcal Electronic energy + Delta-G solvation = -26024.696974 eV Core-core repulsion = 22168.597159 eV Total energy + Delta-G solvation = -3856.099815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65366 -40.48744 -39.50610 -37.80535 -36.82937 -34.34311 -33.28129 -32.50673 -31.42226 -31.17123 -27.84344 -26.96804 -25.61404 -24.63446 -24.10897 -22.97994 -22.38106 -21.42912 -20.32212 -19.55868 -19.11778 -18.13771 -17.64248 -17.44310 -16.85463 -16.61530 -16.58801 -16.16875 -15.76316 -15.49666 -15.25838 -15.25156 -15.08720 -14.93938 -14.74453 -14.25808 -14.08065 -13.81494 -13.60429 -13.31920 -12.95730 -12.88259 -12.55054 -12.46588 -12.39571 -12.32708 -12.13353 -12.01913 -11.78061 -11.73486 -11.69492 -11.50864 -10.95421 -10.81748 -10.72243 -10.41608 -9.98882 -9.81957 -9.02397 -7.96146 -5.26244 -0.78802 0.00260 0.58409 1.20543 1.48113 1.49583 1.52669 1.59813 2.00319 2.50838 2.66111 3.02054 3.37842 3.60679 3.74592 3.82471 3.89019 3.97271 4.10259 4.12143 4.21724 4.27265 4.29255 4.33462 4.35994 4.38853 4.53226 4.57979 4.69267 4.70415 4.77093 4.80616 4.84116 4.91830 5.00640 5.09824 5.20388 5.31480 5.34577 5.35443 5.49356 5.96894 6.25639 6.35111 6.53220 6.76902 7.31777 8.07436 8.30041 9.27951 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032735 B = 0.001585 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.149739 B =17662.295299 C =17968.150698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.751 5.751 10 C 0.155 3.845 11 C -0.115 4.115 12 C 0.077 3.923 13 O -0.401 6.401 14 C 0.086 3.914 15 C -0.128 4.128 16 C 0.097 3.903 17 N -0.597 5.597 18 C 0.595 3.405 19 O -0.556 6.556 20 C -0.054 4.054 21 N -0.447 5.447 22 C 0.005 3.995 23 C -0.253 4.253 24 S 0.270 5.730 25 C 0.119 3.881 26 C -0.154 4.154 27 H 0.252 0.748 28 H 0.373 0.627 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.198 0.802 41 H 0.224 0.776 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -35.254 -8.291 36.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.153 4.153 12 C 0.000 4.000 13 O -0.321 6.321 14 C 0.028 3.972 15 C -0.166 4.166 16 C -0.025 4.025 17 N -0.330 5.330 18 C 0.379 3.621 19 O -0.434 6.434 20 C -0.328 4.328 21 N -0.164 5.164 22 C -0.150 4.150 23 C -0.393 4.393 24 S 0.523 5.477 25 C -0.003 4.003 26 C -0.193 4.193 27 H 0.060 0.940 28 H 0.204 0.796 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.113 0.887 40 H 0.215 0.785 41 H 0.240 0.760 42 H 0.101 0.899 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.589 -34.858 -7.812 36.157 hybrid contribution -1.160 0.448 0.668 1.412 sum 4.429 -34.410 -7.144 35.422 Atomic orbital electron populations 1.69845 1.06795 1.26116 1.59488 1.25664 0.96470 1.01423 1.03571 0.85001 0.78279 0.79353 0.76670 1.18720 1.21898 1.22069 1.19736 0.91705 0.85251 1.41283 0.90196 1.42626 1.05734 1.01439 1.89546 1.20675 0.93819 0.84387 0.98240 1.21487 0.98644 0.92999 1.02130 1.22366 0.91277 0.84886 1.01443 1.87922 1.34690 1.14292 1.95157 1.22217 0.97360 0.82604 0.94981 1.21949 0.98714 0.93127 1.02799 1.22336 1.02657 0.96214 0.81282 1.48059 1.53056 1.16034 1.15857 1.17093 0.77995 0.81456 0.85530 1.90815 1.57014 1.78027 1.17502 1.27203 1.01674 1.05369 0.98523 1.66645 1.09646 1.05311 1.34798 1.22198 1.03999 1.00497 0.88336 1.27430 1.01084 1.05926 1.04865 1.83674 1.28129 1.29794 1.06074 1.21655 0.94709 0.87029 0.96896 1.22335 1.01696 0.96864 0.98378 0.93961 0.79578 0.95660 0.95275 0.92132 0.92712 0.92147 0.91318 0.89155 0.87750 0.92520 0.86436 0.88716 0.78497 0.75979 0.89865 0.87466 0.89200 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.53 13.06 21.65 0.28 -60.24 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 3 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.75 -39.14 5.60 -343.46 -1.92 -41.07 16 10 C 0.16 6.11 6.26 86.38 0.54 6.65 16 11 C -0.11 -3.74 5.70 30.59 0.17 -3.57 16 12 C 0.08 1.84 5.75 71.98 0.41 2.25 16 13 O -0.40 -9.65 9.99 -148.98 -1.49 -11.14 16 14 C 0.09 1.39 2.57 30.62 0.08 1.46 16 15 C -0.13 -1.72 5.73 30.67 0.18 -1.54 16 16 C 0.10 0.94 5.65 86.36 0.49 1.42 16 17 N -0.60 -9.55 2.98 -823.82 -2.45 -12.00 16 18 C 0.59 13.49 7.66 86.61 0.66 14.16 16 19 O -0.56 -17.47 16.52 -4.11 -0.07 -17.54 16 20 C -0.05 -1.01 6.44 87.25 0.56 -0.45 16 21 N -0.45 -9.56 10.65 -190.31 -2.03 -11.59 16 22 C 0.01 0.07 11.24 83.95 0.94 1.01 16 23 C -0.25 -1.60 11.09 66.90 0.74 -0.86 16 24 S 0.27 2.07 20.19 -56.49 -1.14 0.93 16 25 C 0.12 1.76 6.41 86.22 0.55 2.31 16 26 C -0.15 -2.61 5.68 30.53 0.17 -2.43 16 27 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.06 1.30 7.84 -2.39 -0.02 1.28 16 34 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 35 H 0.09 1.02 7.79 -2.39 -0.02 1.00 16 36 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.10 0.79 4.50 -11.74 -0.05 0.74 16 40 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.22 -0.35 8.06 -2.91 -0.02 -0.37 16 42 H 0.08 1.57 6.99 -2.39 -0.02 1.55 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.42 7.84 -2.39 -0.02 1.40 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -80.90 381.78 0.27 -80.63 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.25 Total: 20.67 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.81 Total: 3.07 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -6.12 Total: -124.90 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.56 Total: -28.68 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.14 Total: 0.93 kcal Total: -80.90 0.27 -80.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755348265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.820 kcal (2) G-P(sol) polarization free energy of solvation -80.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds