Wall clock time and date at job start Tue Mar 31 2020 22:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00358 * 2 1 4 4 H 1.48501 * 109.47024 * 269.99780 * 3 2 1 5 5 H 1.48499 * 109.46708 * 29.99639 * 3 2 1 6 6 H 1.48487 * 109.47232 * 149.99634 * 3 2 1 7 7 C 1.38817 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00488 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47008 * 325.00353 * 10 9 7 12 12 C 1.53004 * 109.47171 * 84.99750 * 10 9 7 13 13 O 1.42898 * 109.46466 * 65.00228 * 12 10 9 14 14 C 1.52996 * 109.47509 * 205.00279 * 10 9 7 15 15 N 1.46498 * 109.47059 * 54.99655 * 14 10 9 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 10 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 N 1.46492 * 109.47441 * 180.02562 * 18 16 15 20 20 C 1.34776 * 120.00063 * 180.02562 * 19 18 16 21 21 O 1.21552 * 120.00030 * 0.02562 * 20 19 18 22 22 C 1.47853 * 119.99959 * 179.97438 * 20 19 18 23 23 C 1.39596 * 120.13497 * 359.72508 * 22 20 19 24 24 C 1.37940 * 119.90560 * 179.76672 * 23 22 20 25 25 C 1.38344 * 120.17657 * 0.51011 * 24 23 22 26 26 C 1.38554 * 120.26486 * 359.74074 * 25 24 23 27 27 F 1.35097 * 119.95303 * 180.02562 * 26 25 24 28 28 C 1.38213 * 120.09254 * 0.02562 * 26 25 24 29 29 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 30 30 H 0.97009 * 119.99600 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47343 * 185.00159 * 12 10 9 32 32 H 1.09004 * 109.46984 * 305.00700 * 12 10 9 33 33 H 0.96700 * 113.99771 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.47066 * 294.99922 * 14 10 9 35 35 H 1.08994 * 109.46974 * 175.00070 * 14 10 9 36 36 H 0.97001 * 120.00384 * 0.02562 * 15 14 10 37 37 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 38 38 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 39 39 H 0.97003 * 120.00350 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.04466 * 0.02562 * 23 22 20 41 41 H 1.08006 * 119.91487 * 180.23430 * 24 23 22 42 42 H 1.07992 * 119.86914 * 179.76656 * 25 24 23 43 43 H 1.08000 * 120.08632 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4218 -4.0357 1.4376 13 8 1.2275 -4.2886 2.1803 14 6 1.1808 -4.7522 -0.6091 15 7 0.7342 -4.3354 -1.9407 16 6 -0.0507 -5.1498 -2.6737 17 8 -0.3914 -6.2255 -2.2289 18 6 -0.5050 -4.7239 -4.0460 19 7 -1.3410 -5.7747 -4.6317 20 6 -1.8628 -5.6123 -5.8637 21 8 -1.6394 -4.5942 -6.4890 22 6 -2.7061 -6.6731 -6.4550 23 6 -2.9590 -7.8463 -5.7420 24 6 -3.7503 -8.8309 -6.2963 25 6 -4.2855 -8.6631 -7.5609 26 6 -4.0349 -7.5038 -8.2771 27 9 -4.5611 -7.3464 -9.5114 28 6 -3.2474 -6.5081 -7.7304 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.0423 -4.9318 1.4311 32 1 2.9715 -3.2165 1.9012 33 1 1.3826 -4.5345 3.1026 34 1 0.3131 -4.9201 0.0290 35 1 1.7556 -5.6746 -0.6908 36 1 1.0069 -3.4753 -2.2966 37 1 -1.0818 -3.8024 -3.9680 38 1 0.3650 -4.5553 -4.6807 39 1 -1.5184 -6.5876 -4.1331 40 1 -2.5390 -7.9812 -4.7563 41 1 -3.9492 -9.7371 -5.7432 42 1 -4.9013 -9.4387 -7.9916 43 1 -3.0525 -5.6043 -8.2886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755645673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:54 Heat of formation + Delta-G solvation = -125.243084 kcal Electronic energy + Delta-G solvation = -28025.312462 eV Core-core repulsion = 23599.511424 eV Total energy + Delta-G solvation = -4425.801038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.26333 -40.57301 -39.50911 -38.33632 -37.21099 -35.10199 -34.60109 -33.59648 -31.87518 -31.47864 -30.99773 -28.85763 -27.73512 -25.17626 -24.03481 -23.58729 -23.01940 -20.82571 -20.42804 -20.11510 -18.90417 -17.68699 -16.99654 -16.91949 -16.65946 -16.60829 -16.17809 -16.07602 -15.87312 -15.78791 -15.36513 -14.86802 -14.59587 -14.29741 -14.12317 -13.82761 -13.59047 -13.53951 -13.31246 -13.11361 -12.89556 -12.74634 -12.41470 -12.39440 -11.98300 -11.74716 -11.48885 -10.93663 -10.87834 -10.65620 -10.28882 -10.14832 -9.90254 -9.79922 -9.60675 -9.42621 -9.34743 -9.18920 -9.03185 -8.75899 -7.09590 -5.86172 -3.17088 0.30221 0.72980 2.46473 2.65406 2.69949 3.36193 3.36785 3.42186 3.44567 3.50639 3.83266 4.24982 4.31770 4.48610 4.57438 4.63640 4.82049 4.85662 4.87500 5.22061 5.28635 5.33803 5.40005 5.44429 5.49807 5.52737 5.61010 5.75685 5.79721 5.80852 5.94874 5.97605 6.06010 6.26938 6.35419 6.44055 6.65274 6.72833 7.25322 7.58179 7.70641 7.94409 8.14285 8.30308 8.32633 9.43124 9.97075 10.33295 11.35217 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.002086 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.265002 B =13421.297461 C =14856.651605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.067 0.933 12 C 0.059 3.941 13 O -0.561 6.561 14 C 0.119 3.881 15 N -0.703 5.703 16 C 0.507 3.493 17 O -0.555 6.555 18 C 0.098 3.902 19 N -0.708 5.708 20 C 0.559 3.441 21 O -0.531 6.531 22 C -0.101 4.101 23 C -0.095 4.095 24 C -0.096 4.096 25 C -0.130 4.130 26 C 0.091 3.909 27 F -0.136 7.136 28 C -0.095 4.095 29 H 0.257 0.743 30 H 0.389 0.611 31 H 0.027 0.973 32 H 0.049 0.951 33 H 0.364 0.636 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.413 0.587 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.411 0.589 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 -18.759 -10.428 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.006 4.006 15 N -0.354 5.354 16 C 0.292 3.708 17 O -0.435 6.435 18 C -0.029 4.029 19 N -0.363 5.363 20 C 0.346 3.654 21 O -0.408 6.408 22 C -0.105 4.105 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.149 4.149 26 C 0.072 3.928 27 F -0.114 7.114 28 C -0.115 4.115 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.209 0.791 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.250 0.750 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.251 0.749 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.082 -18.443 -11.149 21.934 hybrid contribution 0.472 0.967 0.613 1.238 sum -3.609 -17.476 -10.536 20.723 Atomic orbital electron populations 1.69673 1.05104 1.25847 1.56555 1.24760 0.95467 0.97715 1.02437 0.86216 0.78610 0.83873 0.77553 1.21602 1.21781 1.20843 1.19197 0.90910 0.83996 1.44047 0.91170 1.42372 1.06038 0.99031 1.88047 1.20598 0.95046 0.86993 0.91984 0.91572 1.23036 0.86512 0.97303 0.95373 1.86562 1.32171 1.91920 1.25744 1.21600 0.99679 0.97015 0.82269 1.45896 1.50018 1.21615 1.17917 1.20328 0.78861 0.84789 0.86797 1.90651 1.57361 1.22918 1.72522 1.21137 0.96953 0.92271 0.92552 1.45558 1.51293 1.22238 1.17235 1.18074 0.79763 0.86517 0.81087 1.90820 1.59946 1.28931 1.61128 1.19713 1.00416 0.95275 0.95055 1.21502 0.97298 0.92508 1.00072 1.21002 0.96450 0.99498 0.94488 1.21391 1.01200 0.96841 0.95496 1.17545 0.97914 0.95782 0.81588 1.91531 1.84616 1.95859 1.39427 1.21248 0.95793 0.99369 0.95078 0.93353 0.77677 0.95525 0.93255 0.79099 0.90362 0.91918 0.74971 0.87603 0.88036 0.74942 0.84431 0.84082 0.84201 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 13.06 55.49 0.72 -26.02 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.39 9.93 -15.06 -0.15 -6.54 16 8 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 9 N -0.71 -16.24 4.51 -53.43 -0.24 -16.48 16 10 C 0.17 2.94 2.84 -67.93 -0.19 2.75 16 11 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 12 C 0.06 0.97 6.86 37.16 0.25 1.22 16 13 O -0.56 -9.51 12.64 -35.23 -0.45 -9.96 16 14 C 0.12 1.93 5.12 -4.04 -0.02 1.91 16 15 N -0.70 -10.76 5.39 -60.30 -0.32 -11.09 16 16 C 0.51 7.45 7.90 -10.98 -0.09 7.36 16 17 O -0.55 -9.28 15.67 5.55 0.09 -9.19 16 18 C 0.10 1.23 6.15 -5.20 -0.03 1.20 16 19 N -0.71 -8.37 5.48 -62.43 -0.34 -8.72 16 20 C 0.56 7.11 7.77 -12.33 -0.10 7.01 16 21 O -0.53 -8.46 16.35 5.32 0.09 -8.38 16 22 C -0.10 -1.05 5.87 -104.97 -0.62 -1.66 16 23 C -0.09 -0.75 9.54 -39.18 -0.37 -1.12 16 24 C -0.10 -0.61 10.03 -39.65 -0.40 -1.01 16 25 C -0.13 -0.91 10.02 -39.43 -0.40 -1.30 16 26 C 0.09 0.83 7.29 -39.47 -0.29 0.54 16 27 F -0.14 -1.34 17.26 2.25 0.04 -1.30 16 28 C -0.10 -0.98 9.57 -39.11 -0.37 -1.35 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.39 9.88 7.80 -40.82 -0.32 9.56 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.36 4.40 9.12 45.56 0.42 4.82 16 34 H 0.08 1.45 7.39 -51.93 -0.38 1.07 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.41 6.40 8.14 -40.82 -0.33 6.06 16 37 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.41 4.41 5.47 -40.82 -0.22 4.19 16 40 H 0.14 0.88 6.40 -52.49 -0.34 0.55 16 41 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.15 1.59 7.65 -52.49 -0.40 1.18 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -33.08 378.63 -7.10 -40.18 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -4.50 Total: 20.13 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -2.86 Total: 8.75 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.18 Total: -62.30 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.27 Total: -27.53 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.08 -7.10 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755645673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.065 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds