Wall clock time and date at job start Tue Mar 31 2020 22:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00358 * 2 1 4 4 H 1.48501 * 109.47024 * 269.99780 * 3 2 1 5 5 H 1.48499 * 109.46708 * 29.99639 * 3 2 1 6 6 H 1.48487 * 109.47232 * 149.99634 * 3 2 1 7 7 C 1.38817 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00488 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47008 * 325.00353 * 10 9 7 12 12 C 1.53004 * 109.47171 * 84.99750 * 10 9 7 13 13 O 1.42898 * 109.46466 * 65.00228 * 12 10 9 14 14 C 1.52996 * 109.47509 * 205.00279 * 10 9 7 15 15 N 1.46498 * 109.47059 * 54.99655 * 14 10 9 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 10 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 N 1.46492 * 109.47441 * 180.02562 * 18 16 15 20 20 C 1.34776 * 120.00063 * 180.02562 * 19 18 16 21 21 O 1.21552 * 120.00030 * 0.02562 * 20 19 18 22 22 C 1.47853 * 119.99959 * 179.97438 * 20 19 18 23 23 C 1.39596 * 120.13497 * 359.72508 * 22 20 19 24 24 C 1.37940 * 119.90560 * 179.76672 * 23 22 20 25 25 C 1.38344 * 120.17657 * 0.51011 * 24 23 22 26 26 C 1.38554 * 120.26486 * 359.74074 * 25 24 23 27 27 F 1.35097 * 119.95303 * 180.02562 * 26 25 24 28 28 C 1.38213 * 120.09254 * 0.02562 * 26 25 24 29 29 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 30 30 H 0.97009 * 119.99600 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47343 * 185.00159 * 12 10 9 32 32 H 1.09004 * 109.46984 * 305.00700 * 12 10 9 33 33 H 0.96700 * 113.99771 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.47066 * 294.99922 * 14 10 9 35 35 H 1.08994 * 109.46974 * 175.00070 * 14 10 9 36 36 H 0.97001 * 120.00384 * 0.02562 * 15 14 10 37 37 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 38 38 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 39 39 H 0.97003 * 120.00350 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.04466 * 0.02562 * 23 22 20 41 41 H 1.08006 * 119.91487 * 180.23430 * 24 23 22 42 42 H 1.07992 * 119.86914 * 179.76656 * 25 24 23 43 43 H 1.08000 * 120.08632 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4218 -4.0357 1.4376 13 8 1.2275 -4.2886 2.1803 14 6 1.1808 -4.7522 -0.6091 15 7 0.7342 -4.3354 -1.9407 16 6 -0.0507 -5.1498 -2.6737 17 8 -0.3914 -6.2255 -2.2289 18 6 -0.5050 -4.7239 -4.0460 19 7 -1.3410 -5.7747 -4.6317 20 6 -1.8628 -5.6123 -5.8637 21 8 -1.6394 -4.5942 -6.4890 22 6 -2.7061 -6.6731 -6.4550 23 6 -2.9590 -7.8463 -5.7420 24 6 -3.7503 -8.8309 -6.2963 25 6 -4.2855 -8.6631 -7.5609 26 6 -4.0349 -7.5038 -8.2771 27 9 -4.5611 -7.3464 -9.5114 28 6 -3.2474 -6.5081 -7.7304 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.0423 -4.9318 1.4311 32 1 2.9715 -3.2165 1.9012 33 1 1.3826 -4.5345 3.1026 34 1 0.3131 -4.9201 0.0290 35 1 1.7556 -5.6746 -0.6908 36 1 1.0069 -3.4753 -2.2966 37 1 -1.0818 -3.8024 -3.9680 38 1 0.3650 -4.5553 -4.6807 39 1 -1.5184 -6.5876 -4.1331 40 1 -2.5390 -7.9812 -4.7563 41 1 -3.9492 -9.7371 -5.7432 42 1 -4.9013 -9.4387 -7.9916 43 1 -3.0525 -5.6043 -8.2886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755645673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:53 Heat of formation + Delta-G solvation = -152.266149 kcal Electronic energy + Delta-G solvation = -28026.484270 eV Core-core repulsion = 23599.511424 eV Total energy + Delta-G solvation = -4426.972846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.98057 -41.55250 -40.62610 -39.17873 -38.59591 -36.43424 -35.74463 -35.19945 -33.21598 -32.52312 -31.70515 -30.35493 -28.96187 -26.36626 -25.59845 -24.77630 -23.66936 -21.74430 -21.68131 -21.47710 -19.84653 -19.36541 -18.15803 -17.97189 -17.85793 -17.31708 -17.19799 -17.08959 -16.89445 -16.68396 -16.55279 -16.16773 -15.94945 -15.51309 -15.27741 -14.94903 -14.85580 -14.67175 -14.51268 -14.24682 -14.13388 -13.93721 -13.52585 -13.22079 -13.00705 -12.98915 -12.75157 -12.62345 -12.42729 -12.24969 -11.87613 -11.73009 -11.31110 -11.15705 -10.92459 -10.69854 -10.47753 -10.17136 -10.03326 -9.86195 -8.99306 -7.89905 -5.18351 -0.39975 0.08669 1.47042 1.50875 1.51146 1.58879 1.63667 1.64976 2.37916 2.58417 2.62618 3.15526 3.42603 3.47554 3.62121 3.66366 3.72879 3.92268 3.96681 4.01714 4.04294 4.23648 4.25631 4.33172 4.47216 4.59309 4.63864 4.64256 4.87378 4.92538 4.99071 5.02277 5.07102 5.13122 5.21606 5.25635 5.43794 5.56605 5.73617 6.29422 6.30700 6.47195 6.96689 7.07091 7.10384 7.38058 8.11035 8.35129 9.32738 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.002086 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.265002 B =13421.297461 C =14856.651605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.159 3.841 11 H 0.081 0.919 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.130 3.870 15 N -0.704 5.704 16 C 0.513 3.487 17 O -0.573 6.573 18 C 0.103 3.897 19 N -0.701 5.701 20 C 0.559 3.441 21 O -0.572 6.572 22 C -0.120 4.120 23 C -0.089 4.089 24 C -0.086 4.086 25 C -0.117 4.117 26 C 0.076 3.924 27 F -0.144 7.144 28 C -0.111 4.111 29 H 0.248 0.752 30 H 0.373 0.627 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.385 0.615 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.413 0.587 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.418 0.582 40 H 0.153 0.847 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 -21.349 -10.111 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.006 3.994 15 N -0.355 5.355 16 C 0.299 3.701 17 O -0.453 6.453 18 C -0.025 4.025 19 N -0.356 5.356 20 C 0.347 3.653 21 O -0.453 6.453 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.103 4.103 25 C -0.136 4.136 26 C 0.057 3.943 27 F -0.123 7.123 28 C -0.131 4.131 29 H 0.056 0.944 30 H 0.205 0.795 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.233 0.767 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.250 0.750 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.259 0.741 40 H 0.171 0.829 41 H 0.197 0.803 42 H 0.186 0.814 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.222 -21.097 -10.801 23.919 hybrid contribution 0.239 1.601 0.548 1.709 sum -2.983 -19.496 -10.253 22.229 Atomic orbital electron populations 1.69830 1.06583 1.25706 1.59513 1.25461 0.96120 1.00772 1.04087 0.85251 0.77677 0.80182 0.77250 1.21575 1.23205 1.19481 1.19594 0.91476 0.84835 1.40641 0.90056 1.42480 1.05392 1.00201 1.88149 1.20884 0.95253 0.85323 0.93560 0.90146 1.22879 0.86547 0.98580 0.93672 1.86515 1.32871 1.92079 1.27591 1.21427 0.98637 0.97207 0.82122 1.45880 1.50266 1.21660 1.17693 1.20529 0.78177 0.84279 0.87150 1.90637 1.57942 1.23683 1.73084 1.21075 0.97496 0.92232 0.91647 1.45504 1.50875 1.22190 1.17027 1.18474 0.79428 0.86534 0.80835 1.90791 1.61605 1.30740 1.62138 1.19567 1.01456 0.95840 0.95503 1.21739 0.96998 0.91679 1.00402 1.21430 0.94741 1.00042 0.94131 1.21768 1.00276 0.96173 0.95343 1.17718 0.98382 0.96547 0.81665 1.91507 1.84769 1.96000 1.40015 1.21196 0.96938 0.99537 0.95407 0.94359 0.79529 0.91511 0.94744 0.76678 0.92713 0.89792 0.75045 0.88162 0.86716 0.74135 0.82920 0.80336 0.81353 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.13 13.06 21.65 0.28 -56.85 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.23 -11.75 9.93 84.04 0.83 -10.92 16 8 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.72 -32.60 4.51 -322.95 -1.46 -34.06 16 10 C 0.16 5.39 2.84 44.99 0.13 5.52 16 11 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 12 C 0.06 1.94 6.86 71.98 0.49 2.44 16 13 O -0.58 -18.89 12.64 -148.98 -1.88 -20.78 16 14 C 0.13 4.06 5.12 86.38 0.44 4.50 16 15 N -0.70 -21.02 5.39 -463.07 -2.49 -23.52 16 16 C 0.51 14.67 7.90 87.66 0.69 15.36 16 17 O -0.57 -18.47 15.67 -3.04 -0.05 -18.52 16 18 C 0.10 2.57 6.15 85.64 0.53 3.09 16 19 N -0.70 -16.35 5.48 -469.71 -2.57 -18.92 16 20 C 0.56 14.49 7.77 86.79 0.67 15.17 16 21 O -0.57 -19.10 16.35 -3.88 -0.06 -19.16 16 22 C -0.12 -2.47 5.87 -20.09 -0.12 -2.59 16 23 C -0.09 -1.22 9.54 22.53 0.21 -1.00 16 24 C -0.09 -0.78 10.03 22.22 0.22 -0.56 16 25 C -0.12 -1.30 10.02 22.37 0.22 -1.07 16 26 C 0.08 1.34 7.29 22.34 0.16 1.50 16 27 F -0.14 -2.83 17.26 44.97 0.78 -2.05 16 28 C -0.11 -2.35 9.57 22.58 0.22 -2.13 16 29 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.37 19.19 7.80 -92.70 -0.72 18.47 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.39 8.58 9.12 -74.06 -0.68 7.90 16 34 H 0.05 1.99 7.39 -2.38 -0.02 1.98 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 12.62 8.14 -92.71 -0.75 11.86 16 37 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.42 8.53 5.47 -92.71 -0.51 8.02 16 40 H 0.15 1.57 6.40 -2.91 -0.02 1.55 16 41 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 43 H 0.13 3.14 7.65 -2.91 -0.02 3.12 16 Total: -1.00 -72.69 378.63 -1.80 -74.50 By element: Atomic # 1 Polarization: 48.71 SS G_CDS: -1.55 Total: 47.15 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 5.18 Total: 25.89 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -6.24 Total: -133.34 kcal Atomic # 8 Polarization: -56.46 SS G_CDS: -1.99 Total: -58.46 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.69 -1.80 -74.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755645673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.769 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds