Wall clock time and date at job start Tue Mar 31 2020 22:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00177 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.46500 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.34770 * 120.00354 * 180.02562 * 19 18 16 21 21 O 1.21559 * 119.99870 * 359.97438 * 20 19 18 22 22 C 1.47860 * 120.00552 * 179.97438 * 20 19 18 23 23 C 1.39592 * 120.12411 * 359.72355 * 22 20 19 24 24 C 1.37955 * 119.89860 * 179.76898 * 23 22 20 25 25 C 1.38339 * 120.17084 * 0.50824 * 24 23 22 26 26 C 1.38546 * 120.27214 * 359.74707 * 25 24 23 27 27 F 1.35108 * 119.95653 * 180.02562 * 26 25 24 28 28 C 1.38211 * 120.09035 * 359.97438 * 26 25 24 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 32 32 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 33 33 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 35 35 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 36 36 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 37 37 H 1.08997 * 109.47378 * 299.99789 * 18 16 15 38 38 H 1.09000 * 109.47199 * 60.00559 * 18 16 15 39 39 H 0.97005 * 120.00203 * 0.02562 * 19 18 16 40 40 H 1.07991 * 120.05620 * 0.02562 * 23 22 20 41 41 H 1.08000 * 119.91345 * 180.22896 * 24 23 22 42 42 H 1.08009 * 119.86375 * 179.76803 * 25 24 23 43 43 H 1.08004 * 120.08500 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3863 -6.2286 2.2198 18 6 -0.4992 -4.7278 4.0377 19 7 -1.3358 -5.7784 4.6228 20 6 -1.8589 -5.6158 5.8542 21 8 -1.6360 -4.5976 6.4796 22 6 -2.7038 -6.6760 6.4446 23 6 -2.9661 -7.8439 5.7264 24 6 -3.7511 -8.8320 6.2837 25 6 -4.2874 -8.6639 7.5478 26 6 -4.0359 -7.5053 8.2646 27 9 -4.5625 -7.3479 9.4989 28 6 -3.2463 -6.5106 7.7193 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.9641 -3.2122 -1.9146 32 1 3.0368 -4.9285 -1.4486 33 1 1.3708 -4.5275 -3.1130 34 1 0.3130 -4.9200 -0.0361 35 1 1.7583 -5.6761 0.6765 36 1 1.0152 -3.4802 2.2898 37 1 0.3706 -4.5606 4.6729 38 1 -1.0750 -3.8056 3.9598 39 1 -1.5134 -6.5912 4.1239 40 1 -2.5519 -7.9756 4.7379 41 1 -3.9512 -9.7373 5.7298 42 1 -4.9044 -9.4391 7.9777 43 1 -3.0500 -5.6076 8.2784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755645674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:58 Heat of formation + Delta-G solvation = -124.874738 kcal Electronic energy + Delta-G solvation = -28076.263050 eV Core-core repulsion = 23650.477984 eV Total energy + Delta-G solvation = -4425.785066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.27927 -40.61568 -39.58237 -38.37393 -37.32662 -35.21013 -34.67783 -33.84233 -31.91548 -31.53179 -31.01987 -28.73743 -27.65261 -25.25105 -24.04721 -23.45523 -23.04367 -20.86462 -20.52411 -20.30211 -18.94802 -17.78204 -17.09900 -16.99267 -16.76251 -16.63231 -16.23027 -16.11370 -15.93783 -15.89096 -15.42726 -14.90118 -14.61808 -14.30410 -14.13966 -13.83127 -13.74119 -13.56912 -13.53566 -13.35881 -13.04660 -12.82919 -12.45065 -12.42078 -11.89799 -11.77102 -11.56915 -10.95282 -10.79837 -10.53251 -10.32320 -10.06226 -9.93960 -9.63439 -9.57463 -9.38955 -9.24502 -9.21603 -9.04400 -8.85583 -7.17125 -6.18781 -3.21357 0.27705 0.70664 2.43254 2.59412 2.62379 3.33347 3.42363 3.46210 3.48919 3.66933 3.80808 4.21896 4.29395 4.54574 4.56901 4.60898 4.74433 4.79325 4.83286 5.18054 5.22776 5.24332 5.34071 5.34874 5.48324 5.50241 5.58628 5.72869 5.73246 5.77282 5.86450 5.88158 6.00840 6.16525 6.32514 6.33086 6.55260 6.63426 7.20907 7.61380 7.67942 7.90086 8.05954 8.23166 8.66632 9.10018 9.96939 10.11595 11.28591 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.002090 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.962444 B =13396.147831 C =14824.677677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.341 4.341 8 H 0.064 0.936 9 N -0.724 5.724 10 C 0.171 3.829 11 H 0.068 0.932 12 C 0.060 3.940 13 O -0.563 6.563 14 C 0.117 3.883 15 N -0.705 5.705 16 C 0.507 3.493 17 O -0.553 6.553 18 C 0.098 3.902 19 N -0.708 5.708 20 C 0.559 3.441 21 O -0.530 6.530 22 C -0.102 4.102 23 C -0.095 4.095 24 C -0.096 4.096 25 C -0.130 4.130 26 C 0.091 3.909 27 F -0.136 7.136 28 C -0.095 4.095 29 H 0.257 0.743 30 H 0.371 0.629 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.365 0.635 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.413 0.587 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.411 0.589 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -18.889 10.458 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.237 4.237 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.472 4.472 8 H 0.083 0.917 9 N -0.367 5.367 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.357 5.357 16 C 0.292 3.708 17 O -0.433 6.433 18 C -0.029 4.029 19 N -0.364 5.364 20 C 0.346 3.654 21 O -0.408 6.408 22 C -0.105 4.105 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.149 4.149 26 C 0.072 3.928 27 F -0.114 7.114 28 C -0.115 4.115 29 H 0.068 0.932 30 H 0.205 0.795 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.210 0.790 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.249 0.751 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.251 0.749 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.722 -17.035 11.191 20.719 hybrid contribution 0.287 -1.716 -0.636 1.853 sum -3.434 -18.751 10.555 21.790 Atomic orbital electron populations 1.70879 1.06068 1.28686 1.52455 1.25762 0.96997 1.00984 1.00005 0.83259 0.74252 0.75709 0.75818 1.21027 1.22180 1.22347 1.19995 0.91899 0.85660 1.49659 0.91750 1.42367 1.05038 1.00037 1.89276 1.20533 0.95014 0.86457 0.92029 0.91442 1.23019 0.86441 0.97413 0.95327 1.86540 1.32215 1.92033 1.25832 1.21622 0.99725 0.97179 0.82162 1.45914 1.50149 1.21777 1.17837 1.20355 0.78815 0.84782 0.86832 1.90656 1.57281 1.22864 1.72455 1.21130 0.96975 0.92290 0.92493 1.45555 1.51285 1.22229 1.17309 1.18084 0.79761 0.86524 0.81050 1.90824 1.59965 1.28896 1.61076 1.19699 1.00396 0.95337 0.95056 1.21499 0.97342 0.92537 1.00016 1.21004 0.96507 0.99436 0.94486 1.21394 1.01135 0.96851 0.95513 1.17543 0.97873 0.95782 0.81599 1.91536 1.84608 1.95855 1.39407 1.21247 0.95733 0.99363 0.95120 0.93163 0.79467 0.93176 0.95379 0.78966 0.90446 0.91763 0.75053 0.87985 0.87646 0.74936 0.84466 0.84073 0.84173 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.89 13.70 55.49 0.76 -27.13 16 2 C -0.04 -1.07 5.50 -17.43 -0.10 -1.16 16 3 Si 1.08 24.83 29.92 -169.99 -5.09 19.74 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.34 -8.84 9.93 -15.06 -0.15 -8.99 16 8 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 9 N -0.72 -16.50 4.51 -53.43 -0.24 -16.74 16 10 C 0.17 3.08 2.84 -67.93 -0.19 2.88 16 11 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 12 C 0.06 0.98 6.86 37.16 0.25 1.24 16 13 O -0.56 -9.56 12.64 -35.23 -0.45 -10.00 16 14 C 0.12 1.91 5.12 -4.04 -0.02 1.89 16 15 N -0.71 -10.74 5.39 -60.29 -0.32 -11.06 16 16 C 0.51 7.39 7.90 -10.99 -0.09 7.30 16 17 O -0.55 -9.18 15.67 5.55 0.09 -9.10 16 18 C 0.10 1.23 6.15 -5.19 -0.03 1.19 16 19 N -0.71 -8.32 5.48 -62.43 -0.34 -8.66 16 20 C 0.56 7.08 7.77 -12.33 -0.10 6.98 16 21 O -0.53 -8.43 16.35 5.31 0.09 -8.34 16 22 C -0.10 -1.04 5.87 -104.98 -0.62 -1.66 16 23 C -0.10 -0.74 9.54 -39.18 -0.37 -1.11 16 24 C -0.10 -0.60 10.03 -39.65 -0.40 -1.00 16 25 C -0.13 -0.90 10.02 -39.43 -0.40 -1.29 16 26 C 0.09 0.83 7.29 -39.48 -0.29 0.54 16 27 F -0.14 -1.33 17.26 2.25 0.04 -1.29 16 28 C -0.09 -0.97 9.57 -39.11 -0.37 -1.34 16 29 H 0.26 7.60 6.77 -40.82 -0.28 7.33 16 30 H 0.37 9.18 6.63 -40.82 -0.27 8.91 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.37 4.43 9.12 45.56 0.42 4.84 16 34 H 0.08 1.43 7.39 -51.93 -0.38 1.04 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.41 6.38 8.14 -40.82 -0.33 6.05 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.41 4.38 5.47 -40.82 -0.22 4.15 16 40 H 0.14 0.87 6.40 -52.49 -0.34 0.54 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.15 1.58 7.65 -52.48 -0.40 1.18 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -33.97 376.93 -7.04 -41.02 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -4.39 Total: 20.42 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.86 Total: 5.47 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.15 Total: -63.60 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.27 Total: -27.44 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.97 -7.04 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755645674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.857 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds