Wall clock time and date at job start Tue Mar 31 2020 22:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00177 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.46500 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.34770 * 120.00354 * 180.02562 * 19 18 16 21 21 O 1.21559 * 119.99870 * 359.97438 * 20 19 18 22 22 C 1.47860 * 120.00552 * 179.97438 * 20 19 18 23 23 C 1.39592 * 120.12411 * 359.72355 * 22 20 19 24 24 C 1.37955 * 119.89860 * 179.76898 * 23 22 20 25 25 C 1.38339 * 120.17084 * 0.50824 * 24 23 22 26 26 C 1.38546 * 120.27214 * 359.74707 * 25 24 23 27 27 F 1.35108 * 119.95653 * 180.02562 * 26 25 24 28 28 C 1.38211 * 120.09035 * 359.97438 * 26 25 24 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 32 32 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 33 33 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 35 35 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 36 36 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 37 37 H 1.08997 * 109.47378 * 299.99789 * 18 16 15 38 38 H 1.09000 * 109.47199 * 60.00559 * 18 16 15 39 39 H 0.97005 * 120.00203 * 0.02562 * 19 18 16 40 40 H 1.07991 * 120.05620 * 0.02562 * 23 22 20 41 41 H 1.08000 * 119.91345 * 180.22896 * 24 23 22 42 42 H 1.08009 * 119.86375 * 179.76803 * 25 24 23 43 43 H 1.08004 * 120.08500 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3863 -6.2286 2.2198 18 6 -0.4992 -4.7278 4.0377 19 7 -1.3358 -5.7784 4.6228 20 6 -1.8589 -5.6158 5.8542 21 8 -1.6360 -4.5976 6.4796 22 6 -2.7038 -6.6760 6.4446 23 6 -2.9661 -7.8439 5.7264 24 6 -3.7511 -8.8320 6.2837 25 6 -4.2874 -8.6639 7.5478 26 6 -4.0359 -7.5053 8.2646 27 9 -4.5625 -7.3479 9.4989 28 6 -3.2463 -6.5106 7.7193 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.9641 -3.2122 -1.9146 32 1 3.0368 -4.9285 -1.4486 33 1 1.3708 -4.5275 -3.1130 34 1 0.3130 -4.9200 -0.0361 35 1 1.7583 -5.6761 0.6765 36 1 1.0152 -3.4802 2.2898 37 1 0.3706 -4.5606 4.6729 38 1 -1.0750 -3.8056 3.9598 39 1 -1.5134 -6.5912 4.1239 40 1 -2.5519 -7.9756 4.7379 41 1 -3.9512 -9.7373 5.7298 42 1 -4.9044 -9.4391 7.9777 43 1 -3.0500 -5.6076 8.2784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755645674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:57 Heat of formation + Delta-G solvation = -152.591379 kcal Electronic energy + Delta-G solvation = -28077.464934 eV Core-core repulsion = 23650.477984 eV Total energy + Delta-G solvation = -4426.986949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.99295 -41.59899 -40.69515 -39.21501 -38.72933 -36.59077 -35.83575 -35.42019 -33.25426 -32.54199 -31.72297 -30.19093 -28.95394 -26.45666 -25.50876 -24.81020 -23.69067 -21.85157 -21.77803 -21.60823 -19.87092 -19.54369 -18.31650 -18.05591 -17.90669 -17.35199 -17.23164 -17.14680 -17.00548 -16.70750 -16.51798 -16.17152 -15.94993 -15.71250 -15.42589 -15.02071 -14.98022 -14.87574 -14.60798 -14.28107 -14.19847 -13.97190 -13.41934 -13.22946 -13.05001 -13.01155 -12.70463 -12.53484 -12.44780 -12.07175 -11.89197 -11.34447 -11.27537 -11.21442 -10.93928 -10.77541 -10.51796 -10.20785 -10.11802 -9.88245 -9.10616 -8.32115 -5.27889 -0.42170 0.06737 1.39369 1.58928 1.60748 1.61552 1.70129 1.85830 2.30702 2.60362 2.73603 3.13409 3.41770 3.44943 3.51750 3.58472 3.70552 3.74839 3.92454 3.94564 3.99783 4.19476 4.21675 4.27265 4.35642 4.48477 4.54488 4.61864 4.75909 4.90631 4.91345 4.96891 5.02657 5.10916 5.14619 5.19546 5.34058 5.64620 5.71687 6.26720 6.37847 6.54159 6.92828 6.96923 7.01079 7.11885 8.01245 8.14697 9.18602 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.002090 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.962444 B =13396.147831 C =14824.677677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.102 4.102 3 Si 1.124 2.876 4 H -0.301 1.301 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.324 4.324 8 H 0.072 0.928 9 N -0.733 5.733 10 C 0.164 3.836 11 H 0.078 0.922 12 C 0.065 3.935 13 O -0.585 6.585 14 C 0.130 3.870 15 N -0.706 5.706 16 C 0.513 3.487 17 O -0.571 6.571 18 C 0.103 3.897 19 N -0.701 5.701 20 C 0.559 3.441 21 O -0.572 6.572 22 C -0.121 4.121 23 C -0.090 4.090 24 C -0.086 4.086 25 C -0.117 4.117 26 C 0.076 3.924 27 F -0.144 7.144 28 C -0.111 4.111 29 H 0.243 0.757 30 H 0.359 0.641 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.386 0.614 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.418 0.582 40 H 0.153 0.847 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -21.389 10.152 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.294 4.294 3 Si 0.950 3.050 4 H -0.228 1.228 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.455 4.455 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.055 3.945 11 H 0.096 0.904 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.006 3.994 15 N -0.357 5.357 16 C 0.299 3.701 17 O -0.451 6.451 18 C -0.024 4.024 19 N -0.356 5.356 20 C 0.348 3.652 21 O -0.452 6.452 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.103 4.103 25 C -0.135 4.135 26 C 0.057 3.943 27 F -0.123 7.123 28 C -0.131 4.131 29 H 0.054 0.946 30 H 0.191 0.809 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.248 0.752 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.259 0.741 40 H 0.170 0.830 41 H 0.197 0.803 42 H 0.187 0.813 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.863 -19.612 10.855 22.597 hybrid contribution 0.051 -1.108 -0.578 1.251 sum -2.813 -20.720 10.278 23.299 Atomic orbital electron populations 1.70991 1.07337 1.27908 1.56162 1.26997 0.97005 1.04456 1.00937 0.82661 0.73321 0.71998 0.77041 1.22776 1.20147 1.20790 1.20324 0.92331 0.86621 1.46251 0.90991 1.42478 1.04534 1.01042 1.89484 1.20809 0.95139 0.84944 0.93570 0.90408 1.22852 0.86519 0.98602 0.93634 1.86493 1.32789 1.92175 1.27679 1.21437 0.98696 0.97239 0.82070 1.45893 1.50416 1.21814 1.17592 1.20552 0.78114 0.84262 0.87173 1.90643 1.57848 1.23613 1.73008 1.21069 0.97509 0.92279 0.91570 1.45500 1.50860 1.22181 1.17097 1.18485 0.79428 0.86537 0.80798 1.90795 1.61629 1.30708 1.62091 1.19555 1.01430 0.95902 0.95504 1.21736 0.97024 0.91720 1.00356 1.21433 0.94797 0.99975 0.94133 1.21772 1.00219 0.96182 0.95351 1.17716 0.98338 0.96547 0.81676 1.91512 1.84761 1.95996 1.39998 1.21195 0.96878 0.99533 0.95452 0.94600 0.80912 0.94912 0.91344 0.76533 0.92620 0.89684 0.75169 0.86722 0.88146 0.74123 0.82954 0.80329 0.81320 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.45 13.70 21.65 0.30 -59.15 16 2 C -0.10 -5.65 5.50 84.86 0.47 -5.18 16 3 Si 1.12 50.05 29.92 68.60 2.05 52.10 16 4 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.32 -16.61 9.93 84.03 0.83 -15.78 16 8 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 9 N -0.73 -33.31 4.51 -322.94 -1.46 -34.76 16 10 C 0.16 5.68 2.84 44.99 0.13 5.81 16 11 H 0.08 2.55 8.08 -2.38 -0.02 2.53 16 12 C 0.06 2.00 6.86 71.98 0.49 2.50 16 13 O -0.58 -18.98 12.64 -148.98 -1.88 -20.86 16 14 C 0.13 4.06 5.12 86.38 0.44 4.50 16 15 N -0.71 -21.05 5.39 -463.06 -2.49 -23.54 16 16 C 0.51 14.58 7.90 87.66 0.69 15.28 16 17 O -0.57 -18.27 15.67 -3.05 -0.05 -18.32 16 18 C 0.10 2.56 6.15 85.63 0.53 3.09 16 19 N -0.70 -16.25 5.48 -469.70 -2.57 -18.82 16 20 C 0.56 14.44 7.77 86.79 0.67 15.11 16 21 O -0.57 -19.04 16.35 -3.90 -0.06 -19.10 16 22 C -0.12 -2.46 5.87 -20.09 -0.12 -2.58 16 23 C -0.09 -1.21 9.54 22.53 0.21 -1.00 16 24 C -0.09 -0.77 10.03 22.23 0.22 -0.55 16 25 C -0.12 -1.28 10.02 22.37 0.22 -1.06 16 26 C 0.08 1.33 7.29 22.34 0.16 1.50 16 27 F -0.14 -2.81 17.26 44.97 0.78 -2.04 16 28 C -0.11 -2.33 9.57 22.57 0.22 -2.12 16 29 H 0.24 14.91 6.77 -92.71 -0.63 14.28 16 30 H 0.36 18.08 6.63 -92.71 -0.61 17.46 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.39 8.65 9.12 -74.06 -0.68 7.98 16 34 H 0.06 2.01 7.39 -2.39 -0.02 2.00 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.41 12.64 8.14 -92.71 -0.75 11.88 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.42 8.46 5.47 -92.70 -0.51 7.95 16 40 H 0.15 1.55 6.40 -2.92 -0.02 1.53 16 41 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 42 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.13 3.13 7.65 -2.91 -0.02 3.11 16 Total: -1.00 -74.87 376.93 -1.51 -76.38 By element: Atomic # 1 Polarization: 49.89 SS G_CDS: -1.30 Total: 48.58 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 5.18 Total: 19.53 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -6.23 Total: -136.27 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -1.99 Total: -58.29 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -74.87 -1.51 -76.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755645674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.212 kcal (2) G-P(sol) polarization free energy of solvation -74.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds