Wall clock time and date at job start Tue Mar 31 2020 23:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39838 * 126.45820 * 2 1 4 4 C 1.35455 * 107.86788 * 180.02562 * 3 2 1 5 5 N 1.35527 * 108.87221 * 359.97438 * 4 3 2 6 6 H 0.96997 * 125.68058 * 180.26200 * 5 4 3 7 7 C 1.37657 * 108.64686 * 0.02562 * 5 4 3 8 8 C 1.46674 * 126.24000 * 179.97438 * 7 5 4 9 9 O 1.21696 * 119.99534 * 283.74940 * 8 7 5 10 10 N 1.34771 * 120.00260 * 103.74589 * 8 7 5 11 11 C 1.46498 * 120.00018 * 4.98955 * 10 8 7 12 12 C 1.46506 * 120.00010 * 184.98830 * 10 8 7 13 13 C 1.53000 * 109.46866 * 90.00052 * 12 10 8 14 14 C 1.53009 * 109.46663 * 179.97438 * 13 12 10 15 15 N 1.46496 * 109.46844 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99911 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.50695 * 119.99971 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.47052 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99941 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00357 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00284 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99386 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00406 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46995 * 0.02562 * 24 22 20 26 26 H 1.48510 * 109.47003 * 119.99744 * 24 22 20 27 27 H 1.48491 * 109.47321 * 239.99926 * 24 22 20 28 28 H 1.09007 * 109.46875 * 269.99781 * 1 2 3 29 29 H 1.08998 * 109.47634 * 29.99785 * 1 2 3 30 30 H 1.08997 * 109.47218 * 150.00724 * 1 2 3 31 31 H 1.08002 * 126.06191 * 0.03136 * 3 2 1 32 32 H 1.08002 * 125.56336 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47185 * 94.44607 * 11 10 8 34 34 H 1.08999 * 109.47396 * 214.44774 * 11 10 8 35 35 H 1.09004 * 109.46855 * 334.44600 * 11 10 8 36 36 H 1.08999 * 109.46852 * 209.99971 * 12 10 8 37 37 H 1.08997 * 109.46897 * 329.99927 * 12 10 8 38 38 H 1.08999 * 109.47319 * 299.99633 * 13 12 10 39 39 H 1.08992 * 109.47016 * 60.00326 * 13 12 10 40 40 H 1.08999 * 109.47018 * 299.99896 * 14 13 12 41 41 H 1.08997 * 109.46934 * 59.99976 * 14 13 12 42 42 H 0.97003 * 120.00242 * 359.97438 * 15 14 13 43 43 H 1.08999 * 109.47017 * 299.99262 * 18 16 15 44 44 H 1.08997 * 109.47526 * 59.99704 * 18 16 15 45 45 H 0.96998 * 119.99780 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 -0.0006 5 7 3.6284 -0.6624 -0.0004 6 1 4.4191 -1.2242 0.0029 7 6 2.3263 -1.1089 -0.0002 8 6 1.8899 -2.5092 -0.0005 9 8 1.9478 -3.1643 -1.0245 10 7 1.4248 -3.0704 1.1331 11 6 1.2521 -2.2540 2.3372 12 6 1.0919 -4.4968 1.1613 13 6 2.3268 -5.3007 1.5732 14 6 1.9789 -6.7904 1.6032 15 7 3.1612 -7.5600 1.9981 16 6 3.0907 -8.9027 2.0924 17 8 2.0483 -9.4736 1.8506 18 6 4.3070 -9.6944 2.4980 19 16 3.8954 -11.4567 2.5337 20 6 5.4510 -12.1244 3.0224 21 1 6.2895 -11.4669 3.1988 22 6 5.5993 -13.4955 3.1797 23 7 4.5775 -14.2968 2.9642 24 14 7.2487 -14.2034 3.6970 25 1 8.2267 -13.1003 3.8755 26 1 7.0922 -14.9376 4.9784 27 1 7.7381 -15.1349 2.6493 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 2.0135 2.1549 0.0005 32 1 4.4972 1.3253 -0.0011 33 1 0.2236 -1.8972 2.3899 34 1 1.4737 -2.8554 3.2189 35 1 1.9308 -1.4019 2.2988 36 1 0.2903 -4.6687 1.8796 37 1 0.7660 -4.8135 0.1705 38 1 3.1284 -5.1288 0.8548 39 1 2.6526 -4.9840 2.5639 40 1 1.1775 -6.9619 2.3218 41 1 1.6528 -7.1073 0.6126 42 1 3.9950 -7.1034 2.1911 43 1 5.1085 -9.5227 1.7796 44 1 4.6329 -9.3777 3.4887 45 1 4.6810 -15.2550 3.0744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758337174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:20 Heat of formation + Delta-G solvation = -32.439963 kcal Electronic energy + Delta-G solvation = -25568.503087 eV Core-core repulsion = 21712.939470 eV Total energy + Delta-G solvation = -3855.563617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81227 -39.78178 -39.11653 -36.53088 -35.00657 -33.13530 -32.43430 -32.13105 -30.18972 -29.19014 -27.57636 -27.21773 -25.61667 -25.26401 -22.61964 -21.64890 -20.95681 -20.28218 -19.27656 -18.42375 -17.84355 -17.10551 -16.38257 -16.31518 -15.71441 -15.65580 -15.50365 -14.80980 -14.69021 -14.50093 -14.18103 -14.06403 -13.85212 -13.56435 -13.35034 -13.14656 -13.10665 -12.92826 -12.76704 -12.66130 -12.61414 -12.41991 -11.98541 -11.88972 -11.81385 -11.13562 -11.07169 -11.02313 -10.76564 -10.47658 -9.81286 -9.47087 -9.22114 -9.14642 -9.08259 -8.89763 -8.53347 -8.23376 -6.50244 -6.22169 -3.92614 1.43086 1.86982 2.35025 2.55183 2.98160 3.09765 3.10228 3.21080 3.28151 3.33098 3.72485 4.11377 4.19878 4.58526 4.61676 4.62395 4.70026 4.74000 4.78388 4.87210 5.02571 5.11026 5.13106 5.18854 5.23172 5.26660 5.30155 5.33631 5.52751 5.56614 5.62703 5.64091 5.78125 5.84812 5.89330 5.91348 6.02638 6.13253 6.37965 6.52983 6.59927 6.80681 6.97514 7.59410 7.63576 7.69452 8.34986 8.60874 9.23237 10.85364 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.001585 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.301239 B =17659.963017 C =18256.309685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.116 4.116 3 C -0.201 4.201 4 C 0.010 3.990 5 N -0.529 5.529 6 H 0.419 0.581 7 C -0.040 4.040 8 C 0.589 3.411 9 O -0.523 6.523 10 N -0.604 5.604 11 C 0.078 3.922 12 C 0.116 3.884 13 C -0.145 4.145 14 C 0.125 3.875 15 N -0.739 5.739 16 C 0.531 3.469 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.170 0.830 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 34.734 -1.497 35.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.226 4.226 4 C -0.125 4.125 5 N -0.124 5.124 6 H 0.257 0.743 7 C -0.155 4.155 8 C 0.375 3.625 9 O -0.398 6.398 10 N -0.337 5.337 11 C -0.065 4.065 12 C -0.006 4.006 13 C -0.184 4.184 14 C 0.000 4.000 15 N -0.394 5.394 16 C 0.317 3.683 17 O -0.391 6.391 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.188 0.812 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.222 33.114 -2.457 33.783 hybrid contribution 3.177 0.329 0.775 3.287 sum -3.046 33.443 -1.682 33.623 Atomic orbital electron populations 1.20235 0.89733 1.02525 1.01870 1.19816 0.95397 0.90982 1.06196 1.20725 0.91750 0.98633 1.11448 1.21951 0.99622 0.82658 1.08227 1.41770 1.06687 1.07212 1.56733 0.74336 1.19877 0.84728 0.93311 1.17551 1.17248 0.77581 0.84504 0.83202 1.90884 1.54069 1.63176 1.31647 1.47762 1.64988 1.09819 1.11121 1.21864 1.02315 0.95778 0.86578 1.21446 0.96772 0.78292 1.04136 1.22131 0.99254 0.94492 1.02518 1.21131 0.88714 0.88980 1.01206 1.45974 1.13987 1.06905 1.72546 1.20308 0.90096 0.81463 0.76401 1.90704 1.31131 1.69550 1.47721 1.23530 0.98373 1.04434 1.04071 1.85407 1.17570 0.90506 1.89892 1.22913 0.97088 0.94773 1.53603 0.90887 1.24998 0.97782 0.95922 0.94912 1.70029 1.30063 1.04152 1.46005 0.86110 0.82116 0.78915 0.78309 1.19650 1.20558 1.20552 0.91490 0.91296 0.92187 0.84083 0.81241 0.92015 0.90867 0.90505 0.89497 0.88936 0.91017 0.91056 0.91389 0.91302 0.76919 0.89244 0.89248 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.20 36.00 0.37 -0.17 16 2 C -0.12 -0.90 5.85 -104.16 -0.61 -1.51 16 3 C -0.20 -1.30 10.76 -39.98 -0.43 -1.73 16 4 C 0.01 0.05 11.89 -16.91 -0.20 -0.15 16 5 N -0.53 -3.43 6.10 -9.39 -0.06 -3.48 16 6 H 0.42 1.93 8.96 -40.82 -0.37 1.57 16 7 C -0.04 -0.35 5.05 -81.98 -0.41 -0.76 16 8 C 0.59 6.01 7.16 -12.86 -0.09 5.92 16 9 O -0.52 -7.46 16.66 5.19 0.09 -7.38 16 10 N -0.60 -4.60 2.87 -183.13 -0.53 -5.12 16 11 C 0.08 0.38 10.25 59.85 0.61 0.99 16 12 C 0.12 0.90 5.47 -4.04 -0.02 0.88 16 13 C -0.14 -1.18 5.65 -26.73 -0.15 -1.33 16 14 C 0.12 1.41 5.67 -4.04 -0.02 1.39 16 15 N -0.74 -9.87 5.56 -60.30 -0.33 -10.21 16 16 C 0.53 10.02 7.85 -10.99 -0.09 9.94 16 17 O -0.52 -11.90 15.86 5.56 0.09 -11.81 16 18 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 21 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 24 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 7.96 -51.93 -0.41 0.03 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.17 0.38 8.06 -52.49 -0.42 -0.04 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 35 H 0.08 0.39 6.49 -51.93 -0.34 0.05 16 36 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 37 H 0.09 0.88 7.36 -51.93 -0.38 0.49 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.40 4.13 8.47 -40.82 -0.35 3.78 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -38.40 399.59 -8.73 -47.13 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.88 Total: 0.29 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.63 Total: -2.49 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.18 Total: -44.34 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.17 Total: -19.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.40 -8.73 -47.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758337174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.686 kcal (2) G-P(sol) polarization free energy of solvation -38.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds