Wall clock time and date at job start Tue Mar 31 2020 23:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39838 * 126.45820 * 2 1 4 4 C 1.35455 * 107.86788 * 180.02562 * 3 2 1 5 5 N 1.35527 * 108.87221 * 359.97438 * 4 3 2 6 6 H 0.96997 * 125.68058 * 180.26200 * 5 4 3 7 7 C 1.37657 * 108.64686 * 0.02562 * 5 4 3 8 8 C 1.46674 * 126.24000 * 179.97438 * 7 5 4 9 9 O 1.21696 * 119.99534 * 283.74940 * 8 7 5 10 10 N 1.34771 * 120.00260 * 103.74589 * 8 7 5 11 11 C 1.46498 * 120.00018 * 4.98955 * 10 8 7 12 12 C 1.46506 * 120.00010 * 184.98830 * 10 8 7 13 13 C 1.53000 * 109.46866 * 90.00052 * 12 10 8 14 14 C 1.53009 * 109.46663 * 179.97438 * 13 12 10 15 15 N 1.46496 * 109.46844 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99911 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.50695 * 119.99971 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.47052 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99941 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00357 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00284 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99386 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00406 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46995 * 0.02562 * 24 22 20 26 26 H 1.48510 * 109.47003 * 119.99744 * 24 22 20 27 27 H 1.48491 * 109.47321 * 239.99926 * 24 22 20 28 28 H 1.09007 * 109.46875 * 269.99781 * 1 2 3 29 29 H 1.08998 * 109.47634 * 29.99785 * 1 2 3 30 30 H 1.08997 * 109.47218 * 150.00724 * 1 2 3 31 31 H 1.08002 * 126.06191 * 0.03136 * 3 2 1 32 32 H 1.08002 * 125.56336 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47185 * 94.44607 * 11 10 8 34 34 H 1.08999 * 109.47396 * 214.44774 * 11 10 8 35 35 H 1.09004 * 109.46855 * 334.44600 * 11 10 8 36 36 H 1.08999 * 109.46852 * 209.99971 * 12 10 8 37 37 H 1.08997 * 109.46897 * 329.99927 * 12 10 8 38 38 H 1.08999 * 109.47319 * 299.99633 * 13 12 10 39 39 H 1.08992 * 109.47016 * 60.00326 * 13 12 10 40 40 H 1.08999 * 109.47018 * 299.99896 * 14 13 12 41 41 H 1.08997 * 109.46934 * 59.99976 * 14 13 12 42 42 H 0.97003 * 120.00242 * 359.97438 * 15 14 13 43 43 H 1.08999 * 109.47017 * 299.99262 * 18 16 15 44 44 H 1.08997 * 109.47526 * 59.99704 * 18 16 15 45 45 H 0.96998 * 119.99780 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 -0.0006 5 7 3.6284 -0.6624 -0.0004 6 1 4.4191 -1.2242 0.0029 7 6 2.3263 -1.1089 -0.0002 8 6 1.8899 -2.5092 -0.0005 9 8 1.9478 -3.1643 -1.0245 10 7 1.4248 -3.0704 1.1331 11 6 1.2521 -2.2540 2.3372 12 6 1.0919 -4.4968 1.1613 13 6 2.3268 -5.3007 1.5732 14 6 1.9789 -6.7904 1.6032 15 7 3.1612 -7.5600 1.9981 16 6 3.0907 -8.9027 2.0924 17 8 2.0483 -9.4736 1.8506 18 6 4.3070 -9.6944 2.4980 19 16 3.8954 -11.4567 2.5337 20 6 5.4510 -12.1244 3.0224 21 1 6.2895 -11.4669 3.1988 22 6 5.5993 -13.4955 3.1797 23 7 4.5775 -14.2968 2.9642 24 14 7.2487 -14.2034 3.6970 25 1 8.2267 -13.1003 3.8755 26 1 7.0922 -14.9376 4.9784 27 1 7.7381 -15.1349 2.6493 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 2.0135 2.1549 0.0005 32 1 4.4972 1.3253 -0.0011 33 1 0.2236 -1.8972 2.3899 34 1 1.4737 -2.8554 3.2189 35 1 1.9308 -1.4019 2.2988 36 1 0.2903 -4.6687 1.8796 37 1 0.7660 -4.8135 0.1705 38 1 3.1284 -5.1288 0.8548 39 1 2.6526 -4.9840 2.5639 40 1 1.1775 -6.9619 2.3218 41 1 1.6528 -7.1073 0.6126 42 1 3.9950 -7.1034 2.1911 43 1 5.1085 -9.5227 1.7796 44 1 4.6329 -9.3777 3.4887 45 1 4.6810 -15.2550 3.0744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758337174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:19 Heat of formation + Delta-G solvation = -60.250713 kcal Electronic energy + Delta-G solvation = -25569.709052 eV Core-core repulsion = 21712.939470 eV Total energy + Delta-G solvation = -3856.769582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33278 -40.70386 -40.32763 -37.38588 -36.07727 -34.59568 -33.68341 -33.09804 -31.05211 -30.28561 -28.09821 -27.94754 -27.61384 -26.14736 -23.40576 -22.32455 -21.74919 -21.35820 -19.84423 -19.81652 -18.98978 -17.88827 -17.81274 -17.26335 -16.89540 -16.86184 -16.47247 -16.36657 -15.76210 -15.70476 -15.14322 -14.83285 -14.61265 -14.59575 -14.37633 -14.11083 -13.89313 -13.86909 -13.64056 -13.32720 -13.27614 -13.17040 -13.14812 -13.03485 -12.91474 -12.71938 -12.58720 -12.47856 -11.89372 -11.72337 -11.26464 -11.16809 -11.01913 -10.28668 -10.15398 -9.83812 -9.67702 -9.04225 -8.68117 -8.35786 -6.14082 0.87963 1.20467 1.27925 1.40882 1.46555 1.57502 1.58868 1.83287 1.98836 2.25090 2.29013 2.59342 2.98496 3.30858 3.55488 3.85248 3.91614 3.95505 4.12570 4.21003 4.27570 4.27663 4.30623 4.41023 4.44202 4.49043 4.53437 4.62854 4.76704 4.81868 4.84822 4.93641 4.99355 5.07605 5.09594 5.18083 5.38050 5.39547 5.41164 5.43057 5.89942 6.04235 6.18018 6.19069 6.47203 6.57564 6.93704 7.05574 7.21613 8.73792 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.001585 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.301239 B =17659.963017 C =18256.309685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.123 4.123 3 C -0.219 4.219 4 C 0.024 3.976 5 N -0.529 5.529 6 H 0.426 0.574 7 C -0.070 4.070 8 C 0.587 3.413 9 O -0.578 6.578 10 N -0.595 5.595 11 C 0.074 3.926 12 C 0.115 3.885 13 C -0.126 4.126 14 C 0.124 3.876 15 N -0.713 5.713 16 C 0.532 3.468 17 O -0.566 6.566 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.157 0.843 32 H 0.204 0.796 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.416 0.584 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 37.455 0.090 37.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C -0.243 4.243 4 C -0.111 4.111 5 N -0.124 5.124 6 H 0.264 0.736 7 C -0.184 4.184 8 C 0.375 3.625 9 O -0.457 6.457 10 N -0.326 5.326 11 C -0.067 4.067 12 C -0.008 4.008 13 C -0.165 4.165 14 C 0.000 4.000 15 N -0.367 5.367 16 C 0.318 3.682 17 O -0.444 6.444 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.200 1.200 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.175 0.825 32 H 0.221 0.779 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.253 0.747 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.300 35.905 -0.830 36.171 hybrid contribution 2.536 -0.334 0.274 2.573 sum -1.764 35.572 -0.555 35.620 Atomic orbital electron populations 1.20258 0.89223 1.02040 1.02742 1.20110 0.96059 0.91308 1.05650 1.21020 0.92062 0.99087 1.12107 1.22543 1.00547 0.82316 1.05725 1.41852 1.06278 1.07827 1.56463 0.73565 1.19756 0.85929 0.92587 1.20147 1.17565 0.76992 0.85004 0.82983 1.90848 1.56578 1.64632 1.33609 1.47824 1.63583 1.09827 1.11388 1.22063 1.03137 0.95791 0.85725 1.21444 0.97267 0.78486 1.03633 1.21960 0.99033 0.91995 1.03544 1.21246 0.87941 0.90531 1.00295 1.45724 1.15581 1.05087 1.70348 1.20082 0.88817 0.82993 0.76286 1.90694 1.32562 1.70882 1.50295 1.23373 0.99548 0.99106 1.06057 1.85595 1.19325 0.97345 1.90302 1.23246 0.97116 0.95490 1.53584 0.89863 1.26144 1.02151 0.96301 0.94598 1.70192 1.32773 1.04595 1.47217 0.84887 0.76742 0.78263 0.77932 1.18015 1.19835 1.19991 0.89907 0.90397 0.93992 0.82503 0.77936 0.90855 0.88969 0.90420 0.87009 0.91251 0.92034 0.88627 0.90992 0.93030 0.74727 0.87376 0.86944 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.20 71.23 0.73 -0.28 16 2 C -0.12 -1.79 5.85 -19.56 -0.11 -1.90 16 3 C -0.22 -2.39 10.76 22.01 0.24 -2.16 16 4 C 0.02 0.20 11.89 83.48 0.99 1.19 16 5 N -0.53 -6.13 6.10 -183.62 -1.12 -7.25 16 6 H 0.43 3.43 8.96 -92.71 -0.83 2.60 16 7 C -0.07 -1.17 5.05 40.35 0.20 -0.96 16 8 C 0.59 12.07 7.16 86.45 0.62 12.69 16 9 O -0.58 -17.31 16.66 -4.34 -0.07 -17.39 16 10 N -0.60 -8.44 2.87 -851.52 -2.45 -10.89 16 11 C 0.07 0.55 10.25 127.77 1.31 1.86 16 12 C 0.11 1.66 5.47 86.38 0.47 2.13 16 13 C -0.13 -1.84 5.65 30.60 0.17 -1.66 16 14 C 0.12 2.67 5.67 86.38 0.49 3.16 16 15 N -0.71 -17.81 5.56 -463.07 -2.57 -20.38 16 16 C 0.53 19.78 7.85 87.66 0.69 20.46 16 17 O -0.57 -26.58 15.86 -3.03 -0.05 -26.63 16 18 C -0.13 -5.14 6.16 71.23 0.44 -4.71 16 19 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 20 C -0.55 -31.34 9.50 67.96 0.65 -30.70 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -56.24 13.22 21.65 0.29 -55.96 16 24 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.64 7.96 -2.39 -0.02 0.62 16 31 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.20 0.18 8.06 -2.91 -0.02 0.16 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.09 0.36 8.11 -2.39 -0.02 0.34 16 35 H 0.08 0.61 6.49 -2.38 -0.02 0.60 16 36 H 0.11 1.07 8.07 -2.39 -0.02 1.05 16 37 H 0.07 1.37 7.36 -2.39 -0.02 1.35 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.42 7.43 8.47 -92.71 -0.79 6.64 16 43 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 44 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -87.38 399.59 1.64 -85.74 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.60 Total: 16.44 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 7.35 Total: 0.32 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -5.85 Total: -94.47 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.12 Total: -44.01 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -87.38 1.64 -85.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758337174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.494 kcal (2) G-P(sol) polarization free energy of solvation -87.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds