Wall clock time and date at job start Tue Mar 31 2020 23:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39839 * 126.45720 * 2 1 4 4 C 1.35455 * 107.86171 * 179.72045 * 3 2 1 5 5 N 1.35535 * 108.87625 * 0.42699 * 4 3 2 6 6 C 1.46499 * 125.67933 * 179.82927 * 5 4 3 7 7 C 1.37651 * 108.64223 * 359.57220 * 5 4 3 8 8 C 1.46670 * 126.23566 * 180.24271 * 7 5 4 9 9 O 1.21695 * 120.00304 * 99.21382 * 8 7 5 10 10 N 1.34777 * 119.99907 * 279.21351 * 8 7 5 11 11 C 1.46504 * 119.99919 * 4.86894 * 10 8 7 12 12 C 1.46497 * 120.00361 * 184.87081 * 10 8 7 13 13 C 1.53003 * 109.47213 * 89.99763 * 12 10 8 14 14 N 1.46508 * 109.47175 * 180.02562 * 13 12 10 15 15 C 1.34773 * 120.00005 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99797 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99865 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.46884 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99796 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99897 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99909 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00294 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47079 * 89.99949 * 23 21 19 25 25 H 1.48498 * 109.47358 * 210.00372 * 23 21 19 26 26 H 1.48501 * 109.46792 * 330.00129 * 23 21 19 27 27 H 1.08998 * 109.46695 * 270.01801 * 1 2 3 28 28 H 1.08994 * 109.47112 * 30.02079 * 1 2 3 29 29 H 1.09001 * 109.47014 * 150.02620 * 1 2 3 30 30 H 1.07994 * 126.06981 * 359.97438 * 3 2 1 31 31 H 1.08006 * 125.56055 * 180.26058 * 4 3 2 32 32 H 1.08998 * 109.46932 * 264.69409 * 6 5 4 33 33 H 1.09002 * 109.46933 * 144.69665 * 6 5 4 34 34 H 1.08997 * 109.46969 * 24.69485 * 6 5 4 35 35 H 1.09000 * 109.47418 * 84.65729 * 11 10 8 36 36 H 1.08999 * 109.47155 * 204.65872 * 11 10 8 37 37 H 1.08998 * 109.47026 * 324.65314 * 11 10 8 38 38 H 1.08997 * 109.47529 * 210.00016 * 12 10 8 39 39 H 1.09002 * 109.47109 * 329.99675 * 12 10 8 40 40 H 1.09000 * 109.47182 * 299.99764 * 13 12 10 41 41 H 1.08998 * 109.47281 * 60.00449 * 13 12 10 42 42 H 0.97000 * 119.99568 * 359.97438 * 14 13 12 43 43 H 1.09000 * 109.46599 * 299.99673 * 17 15 14 44 44 H 1.08998 * 109.47064 * 59.99867 * 17 15 14 45 45 H 0.97004 * 120.00055 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0063 5 7 3.6284 -0.6625 0.0007 6 6 4.8226 -1.5111 0.0011 7 6 2.3263 -1.1090 0.0004 8 6 1.8899 -2.5092 0.0001 9 8 1.5475 -3.0401 1.0403 10 7 1.8681 -3.2080 -1.1521 11 6 2.3802 -2.6043 -2.3848 12 6 1.3322 -4.5713 -1.1720 13 6 -0.1679 -4.5254 -1.4697 14 7 -0.7039 -5.8888 -1.4890 15 6 -2.0131 -6.0947 -1.7338 16 8 -2.7476 -5.1514 -1.9376 17 6 -2.5646 -7.4971 -1.7531 18 16 -4.3389 -7.4428 -2.1068 19 6 -4.7107 -9.1648 -2.0710 20 1 -3.9284 -9.8821 -1.8715 21 6 -6.0090 -9.5992 -2.2993 22 7 -6.2867 -10.8856 -2.2730 23 14 -7.3623 -8.3585 -2.6437 24 1 -7.4510 -8.1159 -4.1061 25 1 -8.6583 -8.8898 -2.1505 26 1 -7.0533 -7.0833 -1.9483 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 2.0137 2.1548 -0.0004 31 1 4.4973 1.3253 0.0119 32 1 5.0671 -1.7948 -1.0225 33 1 4.6310 -2.4077 0.5907 34 1 5.6582 -0.9623 0.4355 35 1 3.4600 -2.7437 -2.4364 36 1 1.9108 -3.0812 -3.2452 37 1 2.1507 -1.5387 -2.3901 38 1 1.8384 -5.1496 -1.9450 39 1 1.4959 -5.0403 -0.2018 40 1 -0.6742 -3.9473 -0.6967 41 1 -0.3316 -4.0566 -2.4400 42 1 -0.1163 -6.6432 -1.3263 43 1 -2.0580 -8.0760 -2.5253 44 1 -2.4014 -7.9650 -0.7822 45 1 -7.1940 -11.1893 -2.4329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758913020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:59 Heat of formation + Delta-G solvation = -17.848559 kcal Electronic energy + Delta-G solvation = -26317.353970 eV Core-core repulsion = 22462.423084 eV Total energy + Delta-G solvation = -3854.930886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84342 -39.84618 -39.10563 -36.35783 -34.52126 -34.09547 -32.42772 -31.16296 -30.32036 -28.93979 -28.26294 -26.80729 -25.64339 -25.54401 -23.78923 -21.64192 -20.65848 -20.42496 -18.94480 -17.90270 -17.85501 -16.98512 -16.50074 -16.35503 -15.82564 -15.53655 -15.39056 -15.22643 -14.92065 -14.29494 -14.03665 -13.95211 -13.72816 -13.57847 -13.45346 -13.31689 -13.26745 -13.08667 -12.82858 -12.78658 -12.42138 -12.34136 -12.28267 -12.21848 -11.81204 -11.50167 -11.25521 -10.99585 -10.61614 -10.47310 -9.85292 -9.57917 -9.20346 -9.03549 -8.97374 -8.90672 -8.48965 -8.41856 -6.90681 -6.27836 -3.99539 1.50042 1.87658 2.28562 2.52585 2.74747 2.87096 2.97511 3.33614 3.39176 3.52330 3.70133 4.07410 4.22179 4.34476 4.54269 4.58240 4.59982 4.66491 4.70595 4.76389 4.82502 4.93513 4.97815 5.01787 5.11027 5.11367 5.25032 5.32223 5.42177 5.55244 5.58846 5.70588 5.72067 5.77902 5.84481 5.97862 6.02104 6.04286 6.47766 6.52017 6.65026 6.80596 6.86697 7.56833 7.66491 7.95198 8.42625 8.47902 9.18369 10.81315 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.001932 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.049516 B =14489.676797 C =15092.314398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.107 4.107 3 C -0.199 4.199 4 C 0.006 3.994 5 N -0.426 5.426 6 C 0.069 3.931 7 C -0.044 4.044 8 C 0.594 3.406 9 O -0.516 6.516 10 N -0.605 5.605 11 C 0.079 3.921 12 C 0.104 3.896 13 C 0.108 3.892 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.123 4.123 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.473 21.897 1.321 35.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.224 4.224 4 C -0.127 4.127 5 N -0.102 5.102 6 C -0.073 4.073 7 C -0.156 4.156 8 C 0.380 3.620 9 O -0.390 6.390 10 N -0.339 5.339 11 C -0.064 4.064 12 C -0.019 4.019 13 C -0.018 4.018 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.274 4.274 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.184 0.816 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.234 0.766 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 26.241 22.782 1.524 34.784 hybrid contribution 0.622 -1.165 0.036 1.322 sum 26.863 21.616 1.560 34.516 Atomic orbital electron populations 1.20235 0.89499 1.02371 1.02355 1.19812 0.95443 0.90821 1.05444 1.20703 0.91651 0.98555 1.11457 1.21879 0.99438 0.82313 1.09040 1.43797 1.04841 1.06302 1.55232 1.22131 0.86048 0.95584 1.03516 1.19889 0.84107 0.93119 1.18530 1.17240 0.77681 0.83877 0.83238 1.90880 1.47348 1.69357 1.31412 1.47717 1.61808 1.15152 1.09227 1.21850 0.98726 0.99829 0.86028 1.21658 0.93271 0.82698 1.04319 1.21576 0.92948 0.84739 1.02539 1.45788 1.09834 1.08254 1.75145 1.20283 0.81170 0.91270 0.75509 1.90707 1.57496 1.43885 1.47065 1.23274 1.02756 0.95515 1.05866 1.84806 1.00617 1.12509 1.93605 1.22316 0.98970 0.89336 1.56254 0.89368 1.24717 0.97978 0.95215 0.93443 1.69941 1.21016 1.13363 1.47368 0.86731 0.81654 0.83200 0.80253 1.19219 1.19941 1.15893 0.91265 0.91257 0.92171 0.84027 0.81556 0.90489 0.90022 0.89090 0.92709 0.90150 0.90473 0.89367 0.88779 0.91176 0.91368 0.76604 0.88437 0.88348 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.20 36.01 0.37 -0.49 16 2 C -0.11 -1.09 6.21 -104.15 -0.65 -1.74 16 3 C -0.20 -1.62 10.76 -39.98 -0.43 -2.05 16 4 C 0.01 0.04 11.37 -16.91 -0.19 -0.15 16 5 N -0.43 -3.17 3.16 -120.23 -0.38 -3.55 16 6 C 0.07 0.28 10.89 59.85 0.65 0.94 16 7 C -0.04 -0.45 4.79 -81.98 -0.39 -0.84 16 8 C 0.59 6.80 6.61 -12.86 -0.08 6.71 16 9 O -0.52 -7.92 16.66 5.19 0.09 -7.83 16 10 N -0.61 -5.25 2.87 -183.13 -0.53 -5.77 16 11 C 0.08 0.45 10.22 59.85 0.61 1.06 16 12 C 0.10 0.88 5.53 -4.04 -0.02 0.86 16 13 C 0.11 1.25 6.00 -4.04 -0.02 1.23 16 14 N -0.73 -9.36 5.56 -60.29 -0.33 -9.69 16 15 C 0.53 9.56 7.85 -10.99 -0.09 9.48 16 16 O -0.52 -11.41 15.86 5.55 0.09 -11.32 16 17 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 18 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 23 Si 0.86 21.95 27.74 -169.99 -4.71 17.24 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.65 7.96 -51.93 -0.41 0.24 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16 32 H 0.08 0.20 7.92 -51.93 -0.41 -0.22 16 33 H 0.08 0.42 7.95 -51.93 -0.41 0.01 16 34 H 0.09 0.18 8.12 -51.93 -0.42 -0.24 16 35 H 0.05 0.22 7.92 -51.93 -0.41 -0.19 16 36 H 0.08 0.38 8.03 -51.93 -0.42 -0.04 16 37 H 0.08 0.50 7.00 -51.93 -0.36 0.13 16 38 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 39 H 0.09 0.89 7.36 -51.93 -0.38 0.51 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.40 3.76 8.47 -40.82 -0.35 3.41 16 43 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 44 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -38.40 397.55 -7.78 -46.18 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.96 Total: -0.48 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 0.19 Total: 0.75 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.47 Total: -44.91 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.17 Total: -19.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.40 -7.78 -46.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758913020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.335 kcal (2) G-P(sol) polarization free energy of solvation -38.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds